| { |
| "display_name": "Segmentation: Body MRI/CT 6mm", |
| "short_description": "<b>Description:</b><br>Lightweight <b>KonfAI</b> adaptation of <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator MRI</a> for fast body segmentation into <b>body trunk</b> and <b>extremities</b> from <b>MRI and CT</b> scans at <b>6 mm isotropic</b> resolution.<br><br><b>How to cite:</b><br><cite>T. Akinci D’Antonoli et al., <i>TotalSegmentator MRI: Robust Sequence-Independent Segmentation of Multiple Anatomic Structures in MRI</i>, Radiology, 2025.</cite>", |
| "description": "<b>Description:</b><br>This model integrates the reduced-resolution body configuration of <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator MRI</a> into the <b>KonfAI</b> inference pipeline for efficient <b>MRI/CT</b> body mask generation.<br><br><b>Capabilities:</b><br>• Segmentation of <b>2 body classes</b>: body_trunc and body_extremities<br>• <b>6 mm isotropic</b> input for lower memory usage and fast preprocessing workflows<br>• Robust body mask generation for both <b>MRI and CT</b> downstream pipelines<br><br><b>Training data:</b><br>Trained on a multimodal cohort with <b>MRI and CT</b> scans, with labels for the body trunk and extremities<br><br><b>How to cite:</b><br><cite>T. Akinci D’Antonoli et al., <i>TotalSegmentator MRI: Robust Sequence-Independent Segmentation of Multiple Anatomic Structures in MRI</i>, Radiology, 2025.</cite>", |
| "tta": 0, |
| "mc_dropout": 0, |
| "models": ["M598.pt"], |
| "inputs": { |
| "Volume": { |
| "display_name": "Input Volume", |
| "volume_type": "VOLUME", |
| "required": true |
| } |
| }, |
| "outputs": { |
| "Segmentation": { |
| "display_name": "Segmentation", |
| "volume_type": "SEGMENTATION", |
| "required": true |
| } |
| }, |
| "inputs_evaluations": { |
| "Image": { |
| "Evaluation.yml": { |
| "Segmentation": { |
| "display_name": "Output Segmentation", |
| "volume_type": "VOLUME", |
| "required": true |
| }, |
| "GT_Segmentation": { |
| "display_name": "GT Segmentation", |
| "volume_type": "VOLUME", |
| "required": true |
| } |
| } |
| } |
| }, |
| "terminology": { |
| "1": { "name": "body_trunc", "color": "#4B79EA" }, |
| "2": { "name": "body_extremities", "color": "#A8EA4B" } |
| } |
| } |
|
|
