| --- |
| tags: |
| - porefm |
| - pytorch |
| - nanopore |
| - dna |
| - pretrained |
| --- |
| |
| # PoreFM-DNA |
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| Pretrained PoreFM model for Oxford Nanopore DNA signals. |
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| Model version: **0.1.0**. Chemistry: **R10.4.1 (E8.2, 400 bps)**. Embedding dimension: **384**. |
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| | File | Contents | |
| |---|---| |
| | `backbone.pt` | Backbone for embeddings and downstream tasks. | |
| | `pretraining.pt` | Backbone, pretraining objective heads, and EMA target encoder; optimizer and scheduler states are excluded. | |
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| Model configuration and preprocessing are embedded in the checkpoints. Setup and usage are documented in the PoreFM code repository. |
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| `manifest.json` records artifact identities and tensor fingerprints. `SHA256SUMS` verifies checkpoint downloads. Tensor fingerprints are independent of descriptive metadata; file hashes identify exact bytes. Documentation-only changes leave the model version unchanged. |
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