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license: mit
pipeline_tag: image-segmentation
tags:
- biology
---
Transcription Run-On Grants Detection Of Regulatory elements (TROGDOR).
TROGDOR identifies transcription initiation regions (TIRs) from stranded nascent RNA sequencing data
(GRO-seq, PRO-seq, ChRO-seq, mNET-seq, etc.). It uses a 1D U-Net model and a tiled image segmentation
approach to achieve SOTA performance at predicting TIRs while maintaining computational efficiency.
The TROGDOR pipeline (including model module) can be installed using `pip install trogdor`, or from
the source code at https://github.com/adamyhe/trogdor |