| [project] | |
| name = "simplexuq-code" | |
| version = "0.1.0" | |
| requires-python = ">=3.10,<3.14" | |
| dependencies = [ | |
| "numpy>=1.24", | |
| "scipy>=1.10", | |
| "scikit-learn>=1.3", | |
| "matplotlib>=3.7", | |
| "pyyaml>=6.0", | |
| ] | |
| [project.optional-dependencies] | |
| bio = ["scanpy", "anndata", "rpy2"] # for deconvolution experiments | |
| r = ["rpy2"] # for R integration (visualization, scRNA analysis) | |
| dev = ["pytest", "ruff", "ipykernel"] | |
| gpu = ["torch>=2.0", "torchvision>=0.15"] # for CIFAR softmax experiment | |
| [tool.setuptools.packages.find] | |
| where = ["."] | |
| include = ["src*"] | |
| [tool.ruff] | |
| line-length = 100 | |
| select = ["E", "F", "I"] | |
| [tool.pytest.ini_options] | |
| testpaths = ["tests"] | |