Hugging Face's logo

biohub
/
ESMFold2-Fast

Transformers
Safetensors
English
esmfold2
biology
esm
protein
protein-structure-prediction
structure-prediction
protein-design
3d-structure
confidence-estimation
molecular-dynamics
Model card Files
xet
 Community
ESMFold2-Fast
File size: 2,338 Bytes
b732f7a
 
 
 
 
 
e5d5874
b732f7a
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3e57ae6
b732f7a
 
 
 
 
e5d5874
b732f7a
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
e5d5874
b732f7a
 
e5d5874
 
3e57ae6
b732f7a
 
535c0f7
b732f7a
 
 
 
 
 
 
 
 
 
 
 
3e57ae6
b732f7a
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
535c0f7
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
{
  "architectures": [
    "ESMFold2Model"
  ],
  "confidence_head": {
    "distogram_bins": 39,
    "enabled": true,
    "folding_trunk": {
      "dropout": 0.25,
      "n_heads": 8,
      "n_layers": 4
    },
    "max_dist": 50.75,
    "min_dist": 3.25,
    "num_pae_bins": 64,
    "num_pde_bins": 64,
    "num_plddt_bins": 50
  },
  "d_pair": 256,
  "d_single": 384,
  "disable_msa_features": false,
  "dtype": "float32",
  "esmc_id": "biohub/ESMC-6B",
  "folding_trunk": {
    "dropout": 0.25,
    "n_heads": 8,
    "n_layers": 24
  },
  "force_lm_dropout_during_inference": false,
  "inputs": {
    "atom_encoder": {
      "d_atom": 128,
      "d_token": 768,
      "expansion_ratio": 2,
      "n_blocks": 3,
      "n_heads": 4,
      "n_spatial_rope_pairs_per_axis": 2,
      "n_uid_rope_pairs": 10,
      "spatial_rope_base_frequency": 20.0,
      "swa_window_size": 128,
      "uid_rope_base_frequency": 10000.0
    },
    "d_inputs": 451
  },
  "lm_d_model": 2560,
  "lm_dropout": 0.0,
  "lm_encoder": {
    "enabled": true,
    "lm_dropout": 0.25,
    "n_layers": 4,
    "per_loop_lm_dropout": true
  },
  "lm_num_layers": 80,
  "model_type": "esmfold2",
  "msa_encoder": {
    "d_hidden": 32,
    "d_msa": 128,
    "enabled": false,
    "msa_head_width": 32,
    "n_heads_msa": 8,
    "n_layers": 4
  },
  "msa_encoder_overwrite": true,
  "n_relative_chain_bins": 2,
  "n_relative_residx_bins": 32,
  "num_diffusion_samples": 32,
  "num_loops": 3,
  "parcae": {
    "coda_n_layers": 2,
    "enabled": true,
    "max_steps": 6,
    "min_steps": 1,
    "poisson_mean": 3.0
  },
  "structure_head": {
    "diffusion_module": {
      "atom_num_blocks": 3,
      "atom_num_heads": 4,
      "c_atom": 128,
      "c_s_inputs": 451,
      "c_token": 768,
      "c_z": 256,
      "fourier_dim": 256,
      "relpos_r_max": 32,
      "relpos_s_max": 2,
      "sigma_data": 16.0,
      "token_num_blocks": 12,
      "token_num_heads": 16,
      "transition_multiplier": 2
    },
    "distogram_bins": 64,
    "gamma_0": 0.8,
    "gamma_min": 1.0,
    "inference_num_steps": 14,
    "inference_p": 7.0,
    "inference_s_max": 160.0,
    "inference_s_min": 0.0004,
    "noise_scale": 1.003,
    "step_scale": 1.5,
    "train_noise_log_mean": -1.2,
    "train_noise_log_std": 1.5
  },
  "transformers_version": "4.57.6",
  "type": "release"
}