nioushasadjadi
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a8650f6
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Parent(s):
4025bf2
DOC: Update example to use BertForTokenClassification instead of AutoModel
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README.md
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@@ -13,7 +13,7 @@ A pre-trained transformer model for inference on insect DNA barcoding data.
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To use **BarcodeBERT** as a feature extractor:
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```python
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from transformers import AutoTokenizer,
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# Load the tokenizer
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tokenizer = AutoTokenizer.from_pretrained(
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@@ -21,7 +21,7 @@ tokenizer = AutoTokenizer.from_pretrained(
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)
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# Load the model
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model =
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# Sample sequence
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dna_seq = "ACGCGCTGACGCATCAGCATACGA"
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To use **BarcodeBERT** as a feature extractor:
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```python
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from transformers import AutoTokenizer, BertForTokenClassification
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# Load the tokenizer
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tokenizer = AutoTokenizer.from_pretrained(
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)
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# Load the model
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model = BertForTokenClassification.from_pretrained("bioscan-ml/BarcodeBERT", trust_remote_code=True)
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# Sample sequence
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dna_seq = "ACGCGCTGACGCATCAGCATACGA"
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