StaphylococcusAureus/chip-seq/about.md

ChIP-seq — Staphylococcus aureus

ChIP sequencing samples for S. aureus (GCF_000013425.1).

Samples

S1 — Illumina ChIP-seq

• Raw reads: S1/S1_1.fq.gz, S1/S1_2.fq.gz (paired-end)
• Platform: Illumina
• Upstream pre-processed files in S1/upstream/:
  • S1.bam / S1.bam.bai — aligned reads
  • S1.bed — called peaks

S2 — Illumina ChIP-seq

• Raw reads: S2/S2_1.fq.gz, S2/S2_2.fq.gz (paired-end)
• Platform: Illumina
• Upstream pre-processed files in S2/upstream/:
  • S2.bam / S2.bam.bai — aligned reads
  • S2.bed — called peaks

Notes

• BED files contain pre-called peaks, suitable for downstream motif analysis or peak annotation testing.