Upload 6-parameter conditional DDPM (HI emulation, CAMELS LH params_6, best checkpoint) with full training/eval/posterior toolchain
1f3e7a2 verified | """ | |
| Evaluate Conditional Diffusion Model (6 cosmological parameters, CAMELS LH). | |
| Usage: | |
| python evaluate_conditional.py | |
| python evaluate_conditional.py --checkpoint outputs_conditional_6param_*/checkpoints/best_model.pt | |
| Changes from original: | |
| - Loads args.json (saved by training script) for robust config parsing | |
| - Falls back to args.txt parsing if JSON not available | |
| - Vectorized power spectrum calculation (~100x speedup) | |
| - Added weights_only parameter to torch.load | |
| """ | |
| import argparse | |
| import ast | |
| import json | |
| import os | |
| from pathlib import Path | |
| from typing import Dict, Tuple | |
| _SCRIPT_DIR = Path(__file__).resolve().parent | |
| # Trained weights live under april_26 (this Models tree holds code only). | |
| _DEFAULT_CHECKPOINT = Path( | |
| "<DDPM_ROOT>/april_26/ddpm_hi_lh6/" | |
| "outputs_conditional_6param_20260413_132226/checkpoints/best_model.pt" | |
| ) | |
| _DEFAULT_DATA_DIR = "<DDPM_ROOT>/data/LH_data/params_6" | |
| import matplotlib | |
| matplotlib.use("Agg") | |
| import matplotlib.pyplot as plt | |
| import numpy as np | |
| import torch | |
| from diffusion_conditional import GaussianDiffusion, ConditionalDiffusionModel | |
| from unet_conditional import ConditionalUNet | |
| def parse_args() -> argparse.Namespace: | |
| parser = argparse.ArgumentParser(description="Evaluate conditional 6-parameter diffusion model") | |
| parser.add_argument( | |
| "--checkpoint", | |
| type=str, | |
| default=str(_DEFAULT_CHECKPOINT), | |
| help="Path to trained checkpoint (default: 6-param run best_model.pt next to this script)", | |
| ) | |
| parser.add_argument( | |
| "--training_args", | |
| type=str, | |
| default=None, | |
| help="Path to args.json or args.txt from training (auto-detected from checkpoint folder if not provided)", | |
| ) | |
| parser.add_argument( | |
| "--data_dir", | |
| type=str, | |
| default=_DEFAULT_DATA_DIR, | |
| help="Directory with train_LH_6.npy / train_labels_LH.npy (CAMELS LH params_6 layout)", | |
| ) | |
| parser.add_argument( | |
| "--split", | |
| type=str, | |
| default="test", | |
| choices=["train", "val", "test"], | |
| help="Which split to use for real images", | |
| ) | |
| parser.add_argument( | |
| "--num_samples", | |
| type=int, | |
| default=8, | |
| help="Number of examples to show in the comparison grid", | |
| ) | |
| parser.add_argument( | |
| "--seed", | |
| type=int, | |
| default=42, | |
| help="Random seed for reproducibility", | |
| ) | |
| parser.add_argument( | |
| "--output_dir", | |
| type=str, | |
| default="evaluation_outputs", | |
| help="Where to save plots and results", | |
| ) | |
| parser.add_argument( | |
| "--ddim_steps", | |
| type=int, | |
| default=50, | |
| help="Number of DDIM sampling steps", | |
| ) | |
| return parser.parse_args() | |
| def load_training_config(path: str) -> Dict: | |
| """Load training configuration. Prefers JSON, falls back to txt parsing.""" | |
| # Try JSON first (written by improved training script) | |
| json_path = path.replace('.txt', '.json') if path.endswith('.txt') else path | |
| if json_path.endswith('.json') and os.path.isfile(json_path): | |
| with open(json_path, 'r') as f: | |
| return json.load(f) | |
| # Fall back to txt parsing | |
| if not os.path.isfile(path): | |
| raise FileNotFoundError(f"Training args file not found: {path}") | |
| config = {} | |
| with open(path, "r", encoding="utf-8") as f: | |
| for line in f: | |
| line = line.strip() | |
| if not line or ":" not in line: | |
| continue | |
| key, value = line.split(":", 1) | |
| key = key.strip() | |
| value = value.strip() | |
| if value.startswith("[") and value.endswith("]"): | |
| try: | |
| config[key] = ast.literal_eval(value) | |
| except (ValueError, SyntaxError): | |
| config[key] = value | |
| elif value.isdigit(): | |
| config[key] = int(value) | |
| elif value.replace(".", "", 1).replace("e-", "", 1).replace("e", "", 1).isdigit(): | |
| config[key] = float(value) | |
| else: | |
| config[key] = value | |
| return config | |
| def _detect_label_suffix(data_dir: Path) -> str: | |
| """Detect whether this is a 2-param or 6-param dataset.""" | |
| if (data_dir / "train_labels_LH_2.npy").exists(): | |
| return "_2" | |
| elif (data_dir / "train_labels_LH.npy").exists(): | |
| return "" | |
| else: | |
| raise FileNotFoundError(f"No label files found in {data_dir}") | |
| def _detect_image_suffix(data_dir: Path) -> str: | |
| """Detect whether images use _6 suffix (6-param) or not.""" | |
| if (data_dir / "train_LH.npy").exists(): | |
| return "" | |
| elif (data_dir / "train_LH_6.npy").exists(): | |
| return "_6" | |
| else: | |
| raise FileNotFoundError(f"No image files found in {data_dir}") | |
| def load_label_stats(data_dir: Path) -> Tuple[np.ndarray, np.ndarray]: | |
| """Load mean and std from training labels (used for normalization).""" | |
| suffix = _detect_label_suffix(data_dir) | |
| labels_path = data_dir / f"train_labels_LH{suffix}.npy" | |
| labels = np.load(labels_path) | |
| mean, std = labels.mean(axis=0), labels.std(axis=0) | |
| std = np.where(std == 0, 1.0, std) # guard against zero-variance labels | |
| return mean, std | |
| def load_split(data_dir: Path, split: str) -> Tuple[np.ndarray, np.ndarray]: | |
| """Load images and labels for a given split.""" | |
| img_suffix = _detect_image_suffix(data_dir) | |
| label_suffix = _detect_label_suffix(data_dir) | |
| image_path = data_dir / f"{split}_LH{img_suffix}.npy" | |
| label_path = data_dir / f"{split}_labels_LH{label_suffix}.npy" | |
| if not image_path.exists(): | |
| raise FileNotFoundError(f"Image file not found: {image_path}") | |
| if not label_path.exists(): | |
| raise FileNotFoundError(f"Label file not found: {label_path}") | |
| images = np.load(image_path).astype(np.float32) | |
| labels = np.load(label_path).astype(np.float32) | |
| return images, labels | |
| def build_model(config: Dict, device: torch.device) -> ConditionalDiffusionModel: | |
| """Rebuild the exact same model architecture used during training.""" | |
| unet = ConditionalUNet( | |
| in_channels=1, | |
| out_channels=1, | |
| label_dim=int(config.get("label_dim", 6)), | |
| base_channels=int(config.get("base_channels", 64)), | |
| channel_multipliers=config.get("channel_multipliers", [1, 2, 4, 8]), | |
| attention_levels=config.get("attention_levels", [2, 3]), | |
| dropout=float(config.get("dropout", 0.1)), | |
| ) | |
| diffusion = GaussianDiffusion( | |
| timesteps=int(config.get("timesteps", 1500)), | |
| beta_start=float(config.get("beta_start", 1e-4)), | |
| beta_end=float(config.get("beta_end", 0.02)), | |
| schedule_type=config.get("schedule_type", "linear"), | |
| ) | |
| return ConditionalDiffusionModel(unet, diffusion).to(device) | |
| def load_checkpoint(model: ConditionalDiffusionModel, checkpoint_path: str, device: torch.device): | |
| """Load model weights from checkpoint.""" | |
| checkpoint = torch.load(checkpoint_path, map_location=device, weights_only=False) | |
| state_dict = checkpoint["model_state_dict"] if isinstance(checkpoint, dict) and "model_state_dict" in checkpoint else checkpoint | |
| # If EMA weights are available, use them (they are the better weights) | |
| if isinstance(checkpoint, dict) and "ema_shadow" in checkpoint: | |
| print("Loading EMA shadow weights from checkpoint") | |
| ema_shadow = checkpoint["ema_shadow"] | |
| current_state = model.state_dict() | |
| for name, param in ema_shadow.items(): | |
| if name in current_state: | |
| current_state[name] = param | |
| model.load_state_dict(current_state) | |
| else: | |
| model.load_state_dict(state_dict) | |
| model.eval() | |
| print(f"Loaded checkpoint: {checkpoint_path}") | |
| def PowerSpectrum(box: np.ndarray, N: int, dl: float) -> Tuple[np.ndarray, np.ndarray]: | |
| """Vectorized 2D power spectrum computation.""" | |
| FT_box = np.fft.fftn(box, norm="ortho") | |
| k = 2 * np.pi * np.fft.fftfreq(N, dl) | |
| dk_val = 2 * np.pi / (N * dl) | |
| # Vectorized: compute k magnitudes and bin indices for all pixels at once | |
| ki, kj = np.meshgrid(k, k, indexing='ij') | |
| kbar = np.sqrt(ki**2 + kj**2) | |
| n_bins = N // 2 # only bins up to Nyquist frequency | |
| t_idx = np.round(kbar / dk_val).astype(int) | |
| # Mask out modes beyond Nyquist to avoid bin contamination | |
| valid = t_idx < n_bins | |
| power = (FT_box * np.conj(FT_box)).real | |
| pk = np.zeros(n_bins) | |
| count = np.zeros(n_bins) | |
| np.add.at(pk, t_idx[valid], power[valid]) | |
| np.add.at(count, t_idx[valid], 1) | |
| pk /= np.where(count == 0, 1, count) | |
| pk *= dl**2 | |
| dk = np.arange(n_bins) * dk_val | |
| return dk, pk | |
| def calculate_pdf_batch(images: np.ndarray, log_nhi_min=14.0, log_nhi_max=22.0, n_bins=100): | |
| images_01 = np.clip(images, 0.0, 1.0) | |
| log_nhi_bins = np.linspace(log_nhi_min, log_nhi_max, n_bins) | |
| bin_centers = 0.5 * (log_nhi_bins[:-1] + log_nhi_bins[1:]) | |
| pdfs = [] | |
| for img in images_01: | |
| log_nhi_values = log_nhi_min + (log_nhi_max - log_nhi_min) * img.reshape(-1) | |
| hist, _ = np.histogram(log_nhi_values, bins=log_nhi_bins, density=True) | |
| pdfs.append(hist) | |
| pdf_array = np.stack(pdfs) | |
| return bin_centers, pdf_array.mean(axis=0), pdf_array.std(axis=0) | |
| def calculate_power_spectrum_batch(images: np.ndarray, box_size: float = 25.0): | |
| N = images.shape[-1] | |
| dl = box_size / N | |
| # Compute k-values once, then reuse for all images | |
| dk, _ = PowerSpectrum(images[0], N=N, dl=dl) | |
| power_spectra = [PowerSpectrum(img, N=N, dl=dl)[1] for img in images] | |
| power_array = np.stack(power_spectra) | |
| return dk, power_array.mean(axis=0), power_array.std(axis=0) | |
| def prepare_labels_for_model(labels: np.ndarray, mean: np.ndarray, std: np.ndarray) -> torch.Tensor: | |
| normalized = (labels - mean) / std | |
| return torch.from_numpy(normalized).float() | |
| def from_model_output(samples: torch.Tensor) -> np.ndarray: | |
| arrays = samples.cpu().numpy() | |
| return np.clip((arrays + 1.0) / 2.0, 0.0, 1.0)[:, 0, :, :] | |
| def plot_image_grid(generated, real, labels, output_path: Path, num_samples=8): | |
| num = min(num_samples, generated.shape[0]) | |
| fig, axes = plt.subplots(num, 2, figsize=(6, 3 * num)) | |
| if num == 1: | |
| axes = np.expand_dims(axes, axis=0) | |
| for i in range(num): | |
| label_str = ", ".join(f"{v:.3f}" for v in labels[i]) | |
| axes[i, 0].imshow(generated[i], origin="lower") | |
| axes[i, 0].set_title(f"Generated\n{label_str}") | |
| axes[i, 0].axis("off") | |
| axes[i, 1].imshow(real[i], origin="lower") | |
| axes[i, 1].set_title("Real") | |
| axes[i, 1].axis("off") | |
| plt.tight_layout() | |
| fig.savefig(output_path, dpi=200, bbox_inches="tight") | |
| plt.close(fig) | |
| def plot_mean_std(x, mean_real, std_real, mean_gen, std_gen, xlabel, ylabel, title, output_path: Path, yscale="linear"): | |
| fig, ax = plt.subplots(figsize=(10, 6)) | |
| ax.plot(x, mean_real, label="Real mean", color="tab:blue", linewidth=2) | |
| ax.plot(x, mean_gen, label="Generated mean", color="tab:orange", linewidth=2) | |
| ax.fill_between(x, mean_real - std_real, mean_real + std_real, color="tab:blue", alpha=0.15, label="Real +/-1s") | |
| ax.fill_between(x, mean_real - 3*std_real, mean_real + 3*std_real, color="tab:blue", alpha=0.05) | |
| ax.fill_between(x, mean_gen - std_gen, mean_gen + std_gen, color="tab:orange", alpha=0.15, label="Generated +/-1s") | |
| ax.fill_between(x, mean_gen - 3*std_gen, mean_gen + 3*std_gen, color="tab:orange", alpha=0.05) | |
| ax.set_xlabel(xlabel) | |
| ax.set_ylabel(ylabel) | |
| ax.set_title(title) | |
| ax.set_yscale(yscale) | |
| ax.legend() | |
| ax.grid(alpha=0.3) | |
| fig.tight_layout() | |
| fig.savefig(output_path, dpi=200, bbox_inches="tight") | |
| plt.close(fig) | |
| def main(): | |
| args = parse_args() | |
| torch.manual_seed(args.seed) | |
| np.random.seed(args.seed) | |
| output_dir = Path(args.output_dir) | |
| output_dir.mkdir(parents=True, exist_ok=True) | |
| # Load training config (prefer args.json next to the checkpoint run directory) | |
| if args.training_args is None: | |
| ckpt_path = Path(args.checkpoint).resolve() | |
| run_dir = ckpt_path.parent.parent | |
| for name in ("args.json", "args.txt"): | |
| candidate = run_dir / name | |
| if candidate.is_file(): | |
| args.training_args = str(candidate) | |
| print(f"Auto-detected training args: {args.training_args}") | |
| break | |
| if args.training_args is None: | |
| possible_json = list(_SCRIPT_DIR.glob("outputs_conditional_*/args.json")) | |
| possible_txt = list(_SCRIPT_DIR.glob("outputs_conditional_*/args.txt")) | |
| possible = possible_json + possible_txt | |
| if possible: | |
| args.training_args = str(max(possible, key=os.path.getctime)) | |
| print(f"Auto-detected training args (fallback): {args.training_args}") | |
| else: | |
| raise FileNotFoundError( | |
| "Please provide --training_args path to your training args.json or args.txt" | |
| ) | |
| config = load_training_config(args.training_args) | |
| device = torch.device("cuda" if torch.cuda.is_available() else "cpu") | |
| model = build_model(config, device) | |
| load_checkpoint(model, args.checkpoint, device) | |
| # Load data | |
| data_dir = Path(args.data_dir) | |
| images_split, labels_split = load_split(data_dir, args.split) | |
| label_mean, label_std = load_label_stats(data_dir) | |
| # Select random samples | |
| num_select = min(100, len(images_split)) | |
| indices = np.random.choice(len(images_split), num_select, replace=False) | |
| real_images = images_split[indices] | |
| original_labels = labels_split[indices] | |
| # Generate samples in batches | |
| batch_size = min(8, num_select) | |
| generated_list = [] | |
| print(f"Generating {num_select} samples (batch size = {batch_size})...") | |
| for i in range(0, num_select, batch_size): | |
| batch_labels = original_labels[i:i+batch_size] | |
| batch_labels_tensor = prepare_labels_for_model(batch_labels, label_mean, label_std).to(device) | |
| with torch.no_grad(): | |
| batch_gen = model.sample( | |
| labels=batch_labels_tensor, | |
| channels=1, | |
| height=real_images.shape[-2], | |
| width=real_images.shape[-1], | |
| device=device, | |
| progress=False, | |
| use_ddim=True, | |
| ddim_steps=args.ddim_steps, | |
| ) | |
| generated_list.append(from_model_output(batch_gen)) | |
| print(f" Batch {i//batch_size + 1}/{(num_select+batch_size-1)//batch_size} done") | |
| generated_images = np.concatenate(generated_list, axis=0) | |
| # Plots | |
| plot_image_grid(generated_images, real_images, original_labels, | |
| output_dir / "real_vs_generated.png", num_samples=args.num_samples) | |
| bin_centers, mean_pdf_real, std_pdf_real = calculate_pdf_batch(real_images) | |
| _, mean_pdf_gen, std_pdf_gen = calculate_pdf_batch(generated_images) | |
| plot_mean_std(bin_centers, mean_pdf_real, std_pdf_real, mean_pdf_gen, std_pdf_gen, | |
| "log N_HI [cm^-2]", "PDF", "Column Density PDF", output_dir / "pdf_mean_std.png") | |
| # Power Spectrum (skip k=0 DC component for log-scale plotting) | |
| dk, mean_pk_real, std_pk_real = calculate_power_spectrum_batch(real_images) | |
| _, mean_pk_gen, std_pk_gen = calculate_power_spectrum_batch(generated_images) | |
| plot_mean_std(dk[1:], mean_pk_real[1:], std_pk_real[1:], mean_pk_gen[1:], std_pk_gen[1:], | |
| "k [h/Mpc]", "P(k)", "Power Spectrum", output_dir / "power_spectrum_mean_std.png", yscale="log") | |
| # Save numerical results | |
| np.savez( | |
| output_dir / "evaluation_data.npz", | |
| indices=indices, | |
| labels_original=original_labels, | |
| bin_centers=bin_centers, | |
| mean_pdf_real=mean_pdf_real, std_pdf_real=std_pdf_real, | |
| mean_pdf_gen=mean_pdf_gen, std_pdf_gen=std_pdf_gen, | |
| dk=dk, | |
| mean_pk_real=mean_pk_real, std_pk_real=std_pk_real, | |
| mean_pk_gen=mean_pk_gen, std_pk_gen=std_pk_gen, | |
| ) | |
| print(f"\nEvaluation complete!") | |
| print(f" Plots saved to: {output_dir}") | |
| print(f" Numerical data saved to: {output_dir}/evaluation_data.npz") | |
| if __name__ == "__main__": | |
| main() | |