reinstate save_to_disk patch
Browse files- geneformer/tokenizer.py +1 -1
geneformer/tokenizer.py
CHANGED
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@@ -175,7 +175,7 @@ class TranscriptomeTokenizer:
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)
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output_path = (Path(output_directory) / output_prefix).with_suffix(".dataset")
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-
tokenized_dataset.save_to_disk(output_path)
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def tokenize_files(
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self, data_directory, file_format: Literal["loom", "h5ad"] = "loom"
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)
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output_path = (Path(output_directory) / output_prefix).with_suffix(".dataset")
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+
tokenized_dataset.save_to_disk(str(output_path))
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def tokenize_files(
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self, data_directory, file_format: Literal["loom", "h5ad"] = "loom"
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