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ctheodoris
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files Files and versions
xet
Community
585

Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use ctheodoris/Geneformer with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer")
    model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer")
  • Inference
  • Notebooks
  • Google Colab
  • Kaggle
Geneformer
3.58 GB
Ctrl+K
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  • 20 contributors
History: 245 commits
ctheodoris's picture
ctheodoris
MajorasMeow's picture
MajorasMeow
Update geneformer/mtl/model.py (#585)
ad8f66d 29 days ago
  • Geneformer-V1-10M
    add V2 models 11 months ago
  • Geneformer-V2-104M
    add V2 models 11 months ago
  • Geneformer-V2-104M_CLcancer
    add V2 models 11 months ago
  • Geneformer-V2-316M
    add V2 models 11 months ago
  • docs
    edit docs to remove backend isp functions 11 months ago
  • examples
    delete first version of dist multitask example 11 months ago
  • fine_tuned_models
    add V2 models 11 months ago
  • geneformer
    Update geneformer/mtl/model.py (#585) 29 days ago
  • .gitattributes
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    precommit formatting over 1 year ago
  • .gitignore
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  • .pre-commit-config.yaml
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  • .readthedocs.yaml
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  • MANIFEST.in
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  • README.md
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  • config.json
    591 Bytes
    update with V2 models 11 months ago
  • generation_config.json
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  • model.safetensors
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  • requirements.txt
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  • setup.py
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  • training_args.bin
    5.43 kB
    xet
    update with V2 models 11 months ago