Christina Theodoris
commited on
Commit
·
5cada60
1
Parent(s):
05a3a20
add pickle suffix option to isp stats
Browse files
geneformer/in_silico_perturber_stats.py
CHANGED
|
@@ -726,6 +726,9 @@ class InSilicoPerturberStats:
|
|
| 726 |
| "start_state": "dcm",
|
| 727 |
| "goal_state": "nf",
|
| 728 |
| "alt_states": ["hcm", "other1", "other2"]}
|
|
|
|
|
|
|
|
|
|
| 729 |
model_version : str
|
| 730 |
| To auto-select settings for model version other than current default.
|
| 731 |
| Current options: V1: models pretrained on ~30M cells, V2: models pretrained on ~104M cells
|
|
|
|
| 726 |
| "start_state": "dcm",
|
| 727 |
| "goal_state": "nf",
|
| 728 |
| "alt_states": ["hcm", "other1", "other2"]}
|
| 729 |
+
pickle_suffix : None, str
|
| 730 |
+
| Suffix to subselect intermediate raw files for analysis.
|
| 731 |
+
| Default output of InSilicoPerturber uses suffix "_raw.pickle".
|
| 732 |
model_version : str
|
| 733 |
| To auto-select settings for model version other than current default.
|
| 734 |
| Current options: V1: models pretrained on ~30M cells, V2: models pretrained on ~104M cells
|