Christina Theodoris commited on
Commit
5cada60
·
1 Parent(s): 05a3a20

add pickle suffix option to isp stats

Browse files
geneformer/in_silico_perturber_stats.py CHANGED
@@ -726,6 +726,9 @@ class InSilicoPerturberStats:
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  | "start_state": "dcm",
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  | "goal_state": "nf",
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  | "alt_states": ["hcm", "other1", "other2"]}
 
 
 
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  model_version : str
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  | To auto-select settings for model version other than current default.
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  | Current options: V1: models pretrained on ~30M cells, V2: models pretrained on ~104M cells
 
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  | "start_state": "dcm",
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  | "goal_state": "nf",
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  | "alt_states": ["hcm", "other1", "other2"]}
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+ pickle_suffix : None, str
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+ | Suffix to subselect intermediate raw files for analysis.
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+ | Default output of InSilicoPerturber uses suffix "_raw.pickle".
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  model_version : str
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  | To auto-select settings for model version other than current default.
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  | Current options: V1: models pretrained on ~30M cells, V2: models pretrained on ~104M cells