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Geneformer

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Geneformer / examples

362 kB

19 contributors

History: 18 commits

Christina Theodoris

Add uniform max len for padding for predictions

67f674c over 2 years ago

pretraining_new_model
Add example code for obtaining non-zero median digests over 2 years ago
cell_classification.ipynb

95.8 kB

Subclass collator for cell classification over 2 years ago
gene_classification.ipynb

167 kB

Add uniform max len for padding for predictions over 2 years ago
hyperparam_optimiz_for_disease_classifier.py

6.77 kB

Add example for hyperparameter optimization for disease classifier over 2 years ago
in_silico_perturbation.ipynb

3.37 kB

Add in silico perturbation example notebook. over 2 years ago
tokenizing_scRNAseq_data.ipynb

3.15 kB

Add further explanation regarding input file format for transcriptome tokenizer over 2 years ago