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ctheodoris
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files Files and versions
xet
Community
585

Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use ctheodoris/Geneformer with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer")
    model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer")
  • Inference
  • Notebooks
  • Google Colab
  • Kaggle
Geneformer / examples /pretraining_new_model
85 kB
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  • 20 contributors
History: 3 commits
ctheodoris's picture
ctheodoris
precommit formatting
f07bfd7 over 1 year ago
  • obtain_nonzero_median_digests.ipynb
    80.1 kB
    Add example code for obtaining non-zero median digests almost 3 years ago
  • pretrain_geneformer_w_deepspeed.py
    4.96 kB
    precommit formatting over 1 year ago