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Geneformer

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Geneformer / examples

361 kB

20 contributors

History: 21 commits

Christina Theodoris

Add instructions to convert gene annotations w/ Ensembl Biomart

77eb432 over 2 years ago

pretraining_new_model
Update links including unsorted example lengths file over 2 years ago
cell_classification.ipynb
95.5 kB

Remove unused evalset variable from cell classification example over 2 years ago
gene_classification.ipynb
167 kB

Add uniform max len for padding for predictions over 2 years ago
hyperparam_optimiz_for_disease_classifier.py
6.77 kB

Add example for hyperparameter optimization for disease classifier almost 3 years ago
in_silico_perturbation.ipynb
3.37 kB

Add in silico perturbation example notebook. over 2 years ago
tokenizing_scRNAseq_data.ipynb
3.25 kB

Add instructions to convert gene annotations w/ Ensembl Biomart over 2 years ago