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ctheodoris
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files Files and versions
xet
Community
585

Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use ctheodoris/Geneformer with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer")
    model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer")
  • Inference
  • Notebooks
  • Google Colab
  • Kaggle
Geneformer / benchmarking
212 kB
Ctrl+K
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  • 20 contributors
History: 1 commit
Christina Theodoris
Add alternative methods comparison examples
277b470 over 3 years ago
  • castle_cell_type_annotation.r
    3.53 kB
    Add alternative methods comparison examples over 3 years ago
  • prepare_datasplits_for_cell_type_annotation.ipynb
    9.62 kB
    Add alternative methods comparison examples over 3 years ago
  • randomForest_token_classifier_dosageTF_10k.ipynb
    194 kB
    Add alternative methods comparison examples over 3 years ago
  • scDeepsort_train_predict.ipynb
    5.46 kB
    Add alternative methods comparison examples over 3 years ago