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Geneformer

Model card Files Files and versions

Geneformer / geneformer

3.05 MB

19 contributors

History: 52 commits

tpob's picture

fix: incorrect condition control flow

4f17a92 about 2 years ago

__init__.py

558 Bytes

Add function to extract and plot cell embeddings over 2 years ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification over 2 years ago
emb_extractor.py

19.9 kB

Add option to output embs as tensor over 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card over 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
xet

Upload gene_name_id_dict.pkl (#14) over 2 years ago
in_silico_perturber.py

65.9 kB

Add option to output embs as tensor over 2 years ago
in_silico_perturber_stats.py

34.8 kB

Add option to output embs as tensor over 2 years ago
pretrainer.py

37 kB

fix: incorrect condition control flow about 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
788 kB

Update token_dictionary.pkl over 2 years ago
tokenizer.py

12.8 kB

anndata_tokenizer (#170) over 2 years ago