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Geneformer

Model card Files Files and versions

Geneformer / geneformer

3.07 MB

19 contributors

History: 65 commits

hchen725's picture

Add option for variable input_size and to add CLS/SEP Tokens

944c98c verified almost 2 years ago

__init__.py

558 Bytes

Add function to extract and plot cell embeddings over 2 years ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification over 2 years ago
emb_extractor.py

29.4 kB

edit docstring codeblock highlighting almost 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card over 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
xet

Upload gene_name_id_dict.pkl (#14) over 2 years ago
in_silico_perturber.py

38.7 kB

add load model for train and fix validate anchor gene error almost 2 years ago
in_silico_perturber_stats.py

43 kB

Handle case of single gene del for isp modeling of gene embs almost 2 years ago
perturber_utils.py

24.9 kB

add load model for train and fix validate anchor gene error almost 2 years ago
pretrainer.py

37 kB

fix: incorrect condition control flow (#261) about 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
788 kB

Update token_dictionary.pkl over 2 years ago
tokenizer.py

16.3 kB

Add option for variable input_size and to add CLS/SEP Tokens almost 2 years ago