Hugging Face's logo Hugging Face
  • Models
  • Datasets
  • Spaces
  • Buckets new
  • Docs
  • Enterprise
  • Pricing
    • Website
      • Tasks
      • HuggingChat
      • Collections
      • Languages
      • Organizations
    • Community
      • Blog
      • Posts
      • Daily Papers
      • Learn
      • Discord
      • Forum
      • GitHub
    • Solutions
      • Team & Enterprise
      • Hugging Face PRO
      • Enterprise Support
      • Inference Providers
      • Inference Endpoints
      • Storage Buckets

  • Log In
  • Sign Up

ctheodoris
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files Files and versions
xet
Community
585

Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use ctheodoris/Geneformer with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer")
    model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer")
  • Inference
  • Notebooks
  • Google Colab
  • Kaggle
Geneformer / docs /source
59 kB
Ctrl+K
Ctrl+K
  • 20 contributors
History: 5 commits
Christina Theodoris
Update readthedocs for classifier
f75f5ac about 2 years ago
  • _static
    add readthedocs link to model card over 2 years ago
  • about.rst
    3.46 kB
    add readthedocs link to model card over 2 years ago
  • api.rst
    494 Bytes
    Add classifier module and examples about 2 years ago
  • conf.py
    2.29 kB
    add sphinx docs over 2 years ago
  • geneformer.classifier.rst
    210 Bytes
    Update readthedocs for classifier about 2 years ago
  • geneformer.emb_extractor.rst
    622 Bytes
    add sphinx docs over 2 years ago
  • geneformer.in_silico_perturber.rst
    325 Bytes
    add sphinx docs over 2 years ago
  • geneformer.in_silico_perturber_stats.rst
    672 Bytes
    add sphinx docs over 2 years ago
  • geneformer.tokenizer.rst
    294 Bytes
    add sphinx docs over 2 years ago
  • getstarted.rst
    1.4 kB
    add sphinx docs over 2 years ago
  • index.rst
    359 Bytes
    add sphinx docs over 2 years ago