Geneformer / geneformer

3.14 MB

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20 contributors

History: 74 commits

icefire080

a tiny bug fix missing default_training_args

502cc48 verified about 2 years ago

__init__.py

646 Bytes
Prevent ruff/isort on init about 2 years ago
classifier.py

50.7 kB
update examples for predict_eval and handle roc for 2 cell classes about 2 years ago
classifier_utils.py

14.8 kB
a tiny bug fix missing default_training_args about 2 years ago
collator_for_classification.py

29.8 kB
Subclass collator for cell classification almost 3 years ago
emb_extractor.py

29.3 kB
Add classifier module and examples about 2 years ago
evaluation_utils.py

9.76 kB
update examples for predict_eval and handle roc for 2 cell classes about 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card over 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
xet

Upload gene_name_id_dict.pkl (#14) almost 3 years ago
in_silico_perturber.py

38.7 kB
add load model for train and fix validate anchor gene error about 2 years ago
in_silico_perturber_stats.py

43.2 kB
Add classifier module and examples about 2 years ago
perturber_utils.py

24.9 kB
add load model for train and fix validate anchor gene error about 2 years ago
pretrainer.py

37 kB
fix: incorrect condition control flow (#261) over 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
788 kB
Update token_dictionary.pkl about 3 years ago
tokenizer.py

16.5 kB
correct typo about 2 years ago

Detected Pickle imports (2)

Pickle imports

Detected Pickle imports (2)