Geneformer / geneformer

3.15 MB

19 contributors

History: 75 commits

hchen725

Add input for custom gene token dictionary and add str to valid options

221f100 verified over 1 year ago

__init__.py

646 Bytes

Prevent ruff/isort on init almost 2 years ago
classifier.py

59.7 kB

Add input for custom gene token dictionary and add str to valid options over 1 year ago
classifier_utils.py

15.4 kB

add option for hyperparameter tuning to cc.validate almost 2 years ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification over 2 years ago
emb_extractor.py

29.3 kB

Add classifier module and examples almost 2 years ago
evaluation_utils.py

9.76 kB

update examples for predict_eval and handle roc for 2 cell classes almost 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card over 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
xet

Upload gene_name_id_dict.pkl (#14) over 2 years ago
in_silico_perturber.py

38.7 kB

add load model for train and fix validate anchor gene error almost 2 years ago
in_silico_perturber_stats.py

43.2 kB

Add classifier module and examples almost 2 years ago
perturber_utils.py

24.9 kB

add load model for train and fix validate anchor gene error almost 2 years ago
pretrainer.py

37 kB

fix: incorrect condition control flow (#261) about 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
788 kB

Update token_dictionary.pkl over 2 years ago
tokenizer.py

16.5 kB

correct typo almost 2 years ago

Detected Pickle imports (2)

Pickle imports

Detected Pickle imports (2)