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Geneformer

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Geneformer / geneformer

3.15 MB

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20 contributors

History: 83 commits

hchen725's picture

Update geneformer/perturber_utils.py

7c44d01 verified almost 2 years ago

__init__.py

656 Bytes
fix cell state gene embeddings bug (#345) almost 2 years ago
classifier.py

60.7 kB
patch datasets save_to_disk almost 2 years ago
classifier_utils.py

16.7 kB
Update for gene classification (#330) about 2 years ago
collator_for_classification.py

29.8 kB
Subclass collator for cell classification almost 3 years ago
emb_extractor.py

29.3 kB
Update geneformer/emb_extractor.py (#350) almost 2 years ago
evaluation_utils.py

9.76 kB
update examples for predict_eval and handle roc for 2 cell classes about 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card over 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
xet

Upload gene_name_id_dict.pkl (#14) almost 3 years ago
in_silico_perturber.py

38.9 kB
fix cell state gene embeddings bug (#345) almost 2 years ago
in_silico_perturber_stats.py

43.5 kB
Upload in_silico_perturber_stats.py (#313) almost 2 years ago
perturber_utils.py

25.3 kB
Update geneformer/perturber_utils.py almost 2 years ago
pretrainer.py

37.1 kB
update kwargs for pretrainer about 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
788 kB
Update token_dictionary.pkl about 3 years ago
tokenizer.py

16.5 kB
fix cell state gene embeddings bug (#345) almost 2 years ago