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Geneformer

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Geneformer / geneformer

11.2 MB

19 contributors

History: 108 commits

madhavanvenkatesh's picture

madhavanvenkatesh

pointing dictionaries from the mtl module's init

5539d14 verified over 1 year ago

gene_dictionaries_30m
update with 12L and 20L i4096 gc95M models, multitask and quantiz code over 1 year ago
mtl
pointing dictionaries from the mtl module's init over 1 year ago
__init__.py
1.22 kB

precommit formatting over 1 year ago
classifier.py
64.7 kB

sync token_dictionary variable name w/ classifier over 1 year ago
classifier_utils.py
23.3 kB

precommit formatting over 1 year ago
collator_for_classification.py
31 kB

precommit formatting over 1 year ago
emb_extractor.py
31.8 kB

precommit formatting over 1 year ago
ensembl_mapping_dict_gc95M.pkl
3.96 MB
xet

Add function for summing of Ensembl IDs (#377) over 1 year ago
evaluation_utils.py
9.75 kB

precommit formatting over 1 year ago
gene_median_dictionary_gc95M.pkl
1.51 MB
xet

Add function for summing of Ensembl IDs (#377) over 1 year ago
gene_name_id_dict_gc95M.pkl
2.04 MB
xet

rename for consistency over 1 year ago
in_silico_perturber.py
65.5 kB

allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (#390) over 1 year ago
in_silico_perturber_stats.py
44.9 kB

precommit formatting over 1 year ago
mtl_classifier.py
13.7 kB

"save_model_without_heads" is redundant (#385) over 1 year ago
perturber_utils.py
33 kB

precommit formatting over 1 year ago
pretrainer.py
36.6 kB

update with 12L and 20L i4096 gc95M models, multitask and quantiz code over 1 year ago
token_dictionary_gc95M.pkl
426 kB
xet

update with 12L and 20L i4096 gc95M models, multitask and quantiz code over 1 year ago
tokenizer.py
26.4 kB

precommit formatting over 1 year ago