Geneformer / geneformer

11.4 MB

Ctrl+K

20 contributors

History: 148 commits

Christina Theodoris

add V2 models

7cf49a3 10 months ago

gene_dictionaries_30m
Update geneformer/tokenizer.py (#415) over 1 year ago
mtl
move import wandb to conditional 11 months ago
__init__.py

1.65 kB
update with V2 models 10 months ago
classifier.py

66 kB
update with V2 models 10 months ago
classifier_utils.py

23.5 kB
ensure gene class dict only inverted when using gene classifier about 1 year ago
collator_for_classification.py

31.2 kB
Refactor: Convert mask_token_id, pad_token_id, and all_special_ids to properties (#395) over 1 year ago
emb_extractor.py

33.1 kB
update with V2 models 10 months ago
ensembl_mapping_dict_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
3.96 MB
xet

add V2 models 10 months ago
evaluation_utils.py

9.87 kB
update with V2 models 10 months ago
gene_median_dictionary_gc104M.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
1.51 MB
xet

add V2 models 10 months ago
gene_name_id_dict_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.66 MB
xet

add V2 models 10 months ago
in_silico_perturber.py

67.5 kB
update with V2 models 10 months ago
in_silico_perturber_stats.py

45.7 kB
update with V2 models 10 months ago
mtl_classifier.py

14.5 kB
fully qualified imports to resolve name-space conflicts (#532) 11 months ago
perturber_utils.py

31.8 kB
update with V2 models 10 months ago
pretrainer.py

29.5 kB
remove unused imports while no longer using distributed sampler over 1 year ago
token_dictionary_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
426 kB
xet

add V2 models 10 months ago
tokenizer.py

30.7 kB
update with V2 models 10 months ago

Pickle imports

Detected Pickle imports (2)

Pickle imports

Pickle imports