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Geneformer

Model card Files Files and versions

Geneformer / geneformer

2.99 MB

20 contributors

History: 27 commits

Christina Theodoris

Modify tokenizer to allow renaming attr names btwn loom and .dataset

e78c44d over 2 years ago

__init__.py

518 Bytes

Subclass collator for cell classification over 2 years ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification over 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card over 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
xet

Upload gene_name_id_dict.pkl (#14) over 2 years ago
in_silico_perturber.py

40.3 kB

Modify quant_layers to convert layer nums to integers before calculating max over 2 years ago
in_silico_perturber_stats.py

24.7 kB

Modify documentation for modeling only 2 cell states over 2 years ago
pretrainer.py

37 kB

Update pretrainer for transformers==4.28.0 over 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
788 kB

Update token_dictionary.pkl almost 3 years ago
tokenizer.py

8.54 kB

Modify tokenizer to allow renaming attr names btwn loom and .dataset over 2 years ago