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---
license: apache-2.0
---
## About
DEER (Dense Enzyme Retrieval) provides a method for finding functionally related human-bacteria isozymes using learned dense vector representations (embeddings).
This huggingface repository contains the pre-trained models to reproduce the results and apply DEER to discover isozymes.
The full codes are available at GitHub: https://github.com/WangJiuming/deer/tree/main.
## Citation
If you use the model in your research, please cite our paper with the following.
```
@misc{liu2025Exploring,
author={Liu, H. and Shen, J. and others},
title={Exploring Functional Insights into the Human Gut Microbiome via the Structural Proteome},
year={2025},
note={Manuscript under revision}
}
``` |