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Initial upload: MICCAI FLARE 2026 AutoMSC baseline models
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Dataset001_BrainMets

Task: Multi-class tumor segmentation (necrotic core, enhancing tumor, edema) on brain MRI (T1, T1c, T2, FLAIR) + primary tumor origin classification (binary: NSCLC vs Breast carcinoma)

Note: The classification head outputs 3 classes (0: NSCLC, 1: Breast carcinoma, 2: Other origin — present in the full training cohort but excluded from this public dataset). Since no label-2 cases appear in the public split, AUROC/AUPRC are computed as binary using the class-1 (Breast carcinoma) probability against class-0 (NSCLC).

Per-Fold Results — Segmentation

Fold DSC (necrotic) DSC (enhancing) DSC (edema) DSC mean NSD (necrotic) NSD (enhancing) NSD (edema) NSD mean
0 0.693 0.541 0.633 0.622 0.761 0.659 0.710 0.710
1 0.634 0.605 0.485 0.575 0.719 0.732 0.602 0.684
2 0.591 0.664 0.544 0.599 0.679 0.828 0.733 0.746
3 0.589 0.553 0.399 0.514 0.629 0.669 0.527 0.608
4 0.621 0.601 0.633 0.619 0.713 0.699 0.697 0.703
Mean 0.626 0.593 0.539 0.586 0.700 0.717 0.654 0.690
Std 0.042 0.049 0.100 0.045 0.050 0.068 0.087 0.051

Per-Fold Results — Classification

Fold AUROC AUPRC Bal Acc F1
0 0.849 0.824 0.764 0.776
1 0.848 0.840 0.772 0.766
2 0.938 0.867 0.840 0.771
3 1.000 1.000 0.955 0.921
4 0.993 0.994 0.611 0.530
Mean 0.926 0.905 0.788 0.753
Std 0.074 0.085 0.125 0.141

Figures

Box plots Case sampling ROC/PRC Confusion matrix FP/FN cases