| description = [ |
| { |
| "description": "Search protocols.io for public protocols matching a keyword.", |
| "name": "search_protocols", |
| "optional_parameters": [], |
| "required_parameters": [ |
| { |
| "default": None, |
| "description": "Most important keyword or phrase to search (title, description, authors)", |
| "name": "query", |
| "type": "str", |
| } |
| ], |
| }, |
| { |
| "description": "Retrieve detailed metadata for a specific protocols.io protocol by ID.", |
| "name": "get_protocol_details", |
| "optional_parameters": [ |
| { |
| "default": 30, |
| "description": "Request timeout in seconds", |
| "name": "timeout", |
| "type": "int", |
| } |
| ], |
| "required_parameters": [ |
| { |
| "default": None, |
| "description": "Numeric protocol ID from protocols.io", |
| "name": "protocol_id", |
| "type": "int", |
| } |
| ], |
| }, |
| { |
| "description": "List available protocol files in the local biomni/tool/protocols/ directory. Includes protocols from Addgene and Thermo Fisher Scientific.", |
| "name": "list_local_protocols", |
| "optional_parameters": [ |
| { |
| "default": None, |
| "description": "Filter by source directory (e.g., 'addgene' or 'thermofisher'). If None, lists all protocols.", |
| "name": "source", |
| "type": "str", |
| } |
| ], |
| "required_parameters": [], |
| }, |
| { |
| "description": "Read the contents of a local protocol file from biomni/tool/protocols/. Use list_local_protocols() first to find available protocol filenames.", |
| "name": "read_local_protocol", |
| "optional_parameters": [ |
| { |
| "default": None, |
| "description": "Source directory (e.g., 'addgene' or 'thermofisher'). If None, searches all sources.", |
| "name": "source", |
| "type": "str", |
| } |
| ], |
| "required_parameters": [ |
| { |
| "default": None, |
| "description": "Name of the protocol file (e.g., 'Addgene_ Protocol - How to Run an Agarose Gel.txt')", |
| "name": "filename", |
| "type": "str", |
| } |
| ], |
| }, |
| ] |
|
|
