id int32 0 252k | repo stringlengths 7 55 | path stringlengths 4 127 | func_name stringlengths 1 88 | original_string stringlengths 75 19.8k | language stringclasses 1
value | code stringlengths 51 19.8k | code_tokens list | docstring stringlengths 3 17.3k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 87 242 |
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0 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.settext | def settext(self, text, cls='current'):
"""Set the text for this element.
Arguments:
text (str): The text
cls (str): The class of the text, defaults to ``current`` (leave this unless you know what you are doing). There may be only one text content element of each class associate... | python | def settext(self, text, cls='current'):
self.replace(TextContent, value=text, cls=cls) | [
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1 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.setdocument | def setdocument(self, doc):
"""Associate a document with this element.
Arguments:
doc (:class:`Document`): A document
Each element must be associated with a FoLiA document.
"""
assert isinstance(doc, Document)
if not self.doc:
self.doc = doc
... | python | def setdocument(self, doc):
assert isinstance(doc, Document)
if not self.doc:
self.doc = doc
if self.id:
if self.id in doc:
raise DuplicateIDError(self.id)
else:
self.doc.index[id] = self
for e in s... | [
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2 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.addable | def addable(Class, parent, set=None, raiseexceptions=True):
"""Tests whether a new element of this class can be added to the parent.
This method is mostly for internal use.
This will use the ``OCCURRENCES`` property, but may be overidden by subclasses for more customised behaviour.
Par... | python | def addable(Class, parent, set=None, raiseexceptions=True):
if not parent.__class__.accepts(Class, raiseexceptions, parent):
return False
if Class.OCCURRENCES > 0:
#check if the parent doesn't have too many already
count = parent.count(Class,None,True,[True, Abstract... | [
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3 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.postappend | def postappend(self):
"""This method will be called after an element is added to another and does some checks.
It can do extra checks and if necessary raise exceptions to prevent addition. By default makes sure the right document is associated.
This method is mostly for internal use.
"... | python | def postappend(self):
#If the element was not associated with a document yet, do so now (and for all unassociated children:
if not self.doc and self.parent.doc:
self.setdocument(self.parent.doc)
if self.doc and self.doc.deepvalidation:
self.deepvalidation() | [
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4 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.updatetext | def updatetext(self):
"""Recompute textual value based on the text content of the children. Only supported on elements that are a ``TEXTCONTAINER``"""
if self.TEXTCONTAINER:
s = ""
for child in self:
if isinstance(child, AbstractElement):
child... | python | def updatetext(self):
if self.TEXTCONTAINER:
s = ""
for child in self:
if isinstance(child, AbstractElement):
child.updatetext()
s += child.text()
elif isstring(child):
s += child
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5 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.ancestors | def ancestors(self, Class=None):
"""Generator yielding all ancestors of this element, effectively back-tracing its path to the root element. A tuple of multiple classes may be specified.
Arguments:
*Class: The class or classes (:class:`AbstractElement` or subclasses). Not instances!
... | python | def ancestors(self, Class=None):
e = self
while e:
if e.parent:
e = e.parent
if not Class or isinstance(e,Class):
yield e
elif isinstance(Class, tuple):
for C in Class:
if isinstan... | [
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6 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.ancestor | def ancestor(self, *Classes):
"""Find the most immediate ancestor of the specified type, multiple classes may be specified.
Arguments:
*Classes: The possible classes (:class:`AbstractElement` or subclasses) to select from. Not instances!
Example::
paragraph = word.ance... | python | def ancestor(self, *Classes):
for e in self.ancestors(tuple(Classes)):
return e
raise NoSuchAnnotation | [
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Arguments:
*Classes: The possible classes (:class:`AbstractElement` or subclasses) to select from. Not instances!
Example::
paragraph = word.ancestor(folia.Paragraph) | [
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7 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.json | def json(self, attribs=None, recurse=True, ignorelist=False):
"""Serialises the FoLiA element and all its contents to a Python dictionary suitable for serialisation to JSON.
Example::
import json
json.dumps(word.json())
Returns:
dict
"""
jso... | python | def json(self, attribs=None, recurse=True, ignorelist=False):
jsonnode = {}
jsonnode['type'] = self.XMLTAG
if self.id:
jsonnode['id'] = self.id
if self.set:
jsonnode['set'] = self.set
if self.cls:
jsonnode['class'] = self.cls
if self.a... | [
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Returns:
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8 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.xmlstring | def xmlstring(self, pretty_print=False):
"""Serialises this FoLiA element and all its contents to XML.
Returns:
str: a string with XML representation for this element and all its children"""
s = ElementTree.tostring(self.xml(), xml_declaration=False, pretty_print=pretty_print, encod... | python | def xmlstring(self, pretty_print=False):
s = ElementTree.tostring(self.xml(), xml_declaration=False, pretty_print=pretty_print, encoding='utf-8')
if sys.version < '3':
if isinstance(s, str):
s = unicode(s,'utf-8') #pylint: disable=undefined-variable
else:
... | [
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9 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.select | def select(self, Class, set=None, recursive=True, ignore=True, node=None): #pylint: disable=bad-classmethod-argument,redefined-builtin
"""Select child elements of the specified class.
A further restriction can be made based on set.
Arguments:
Class (class): The class to select; an... | python | def select(self, Class, set=None, recursive=True, ignore=True, node=None): #pylint: disable=bad-classmethod-argument,redefined-builtin
#if ignorelist is True:
# ignorelist = default_ignore
if not node:
node = self
for e in self.data: #pylint: disable=too-many-nested-bloc... | [
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10 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.getmetadata | def getmetadata(self, key=None):
"""Get the metadata that applies to this element, automatically inherited from parent elements"""
if self.metadata:
d = self.doc.submetadata[self.metadata]
elif self.parent:
d = self.parent.getmetadata()
elif self.doc:
... | python | def getmetadata(self, key=None):
if self.metadata:
d = self.doc.submetadata[self.metadata]
elif self.parent:
d = self.parent.getmetadata()
elif self.doc:
d = self.doc.metadata
else:
return None
if key:
return d[key]
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11 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.getindex | def getindex(self, child, recursive=True, ignore=True):
"""Get the index at which an element occurs, recursive by default!
Returns:
int
"""
#breadth first search
for i, c in enumerate(self.data):
if c is child:
return i
if recursi... | python | def getindex(self, child, recursive=True, ignore=True):
#breadth first search
for i, c in enumerate(self.data):
if c is child:
return i
if recursive: #pylint: disable=too-many-nested-blocks
for i, c in enumerate(self.data):
if ignore is Tr... | [
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12 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.precedes | def precedes(self, other):
"""Returns a boolean indicating whether this element precedes the other element"""
try:
ancestor = next(commonancestors(AbstractElement, self, other))
except StopIteration:
raise Exception("Elements share no common ancestor")
#now we jus... | python | def precedes(self, other):
try:
ancestor = next(commonancestors(AbstractElement, self, other))
except StopIteration:
raise Exception("Elements share no common ancestor")
#now we just do a depth first search and see who comes first
def callback(e):
if e... | [
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13 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.depthfirstsearch | def depthfirstsearch(self, function):
"""Generic depth first search algorithm using a callback function, continues as long as the callback function returns None"""
result = function(self)
if result is not None:
return result
for e in self:
result = e.depthfirstsea... | python | def depthfirstsearch(self, function):
result = function(self)
if result is not None:
return result
for e in self:
result = e.depthfirstsearch(function)
if result is not None:
return result
return None | [
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14 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.next | def next(self, Class=True, scope=True, reverse=False):
"""Returns the next element, if it is of the specified type and if it does not cross the boundary of the defined scope. Returns None if no next element is found. Non-authoritative elements are never returned.
Arguments:
* ``Class``: The... | python | def next(self, Class=True, scope=True, reverse=False):
if Class is True: Class = self.__class__
if scope is True: scope = STRUCTURESCOPE
structural = Class is not None and issubclass(Class,AbstractStructureElement)
if reverse:
order = reversed
descendindex = -1
... | [
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15 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.previous | def previous(self, Class=True, scope=True):
"""Returns the previous element, if it is of the specified type and if it does not cross the boundary of the defined scope. Returns None if no next element is found. Non-authoritative elements are never returned.
Arguments:
* ``Class``: The class ... | python | def previous(self, Class=True, scope=True):
return self.next(Class,scope, True) | [
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16 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractElement.remove | def remove(self, child):
"""Removes the child element"""
if not isinstance(child, AbstractElement):
raise ValueError("Expected AbstractElement, got " + str(type(child)))
if child.parent == self:
child.parent = None
self.data.remove(child)
#delete from inde... | python | def remove(self, child):
if not isinstance(child, AbstractElement):
raise ValueError("Expected AbstractElement, got " + str(type(child)))
if child.parent == self:
child.parent = None
self.data.remove(child)
#delete from index
if child.id and self.doc and c... | [
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17 | proycon/pynlpl | pynlpl/formats/folia.py | AllowTokenAnnotation.hasannotation | def hasannotation(self,Class,set=None):
"""Returns an integer indicating whether such as annotation exists, and if so, how many.
See :meth:`AllowTokenAnnotation.annotations`` for a description of the parameters."""
return sum( 1 for _ in self.select(Class,set,True,default_ignore_annotations)) | python | def hasannotation(self,Class,set=None):
return sum( 1 for _ in self.select(Class,set,True,default_ignore_annotations)) | [
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18 | proycon/pynlpl | pynlpl/formats/folia.py | AllowTokenAnnotation.annotation | def annotation(self, type, set=None):
"""Obtain a single annotation element.
A further restriction can be made based on set.
Arguments:
Class (class): The class to select; any python class (not instance) subclassed off :class:`AbstractElement`
Set (str): The set to matc... | python | def annotation(self, type, set=None):
"""Will return a **single** annotation (even if there are multiple). Raises a ``NoSuchAnnotation`` exception if none was found"""
for e in self.select(type,set,True,default_ignore_annotations):
return e
raise NoSuchAnnotation() | [
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19 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractStructureElement.hasannotationlayer | def hasannotationlayer(self, annotationtype=None,set=None):
"""Does the specified annotation layer exist?"""
l = self.layers(annotationtype, set)
return (len(l) > 0) | python | def hasannotationlayer(self, annotationtype=None,set=None):
l = self.layers(annotationtype, set)
return (len(l) > 0) | [
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20 | proycon/pynlpl | pynlpl/formats/folia.py | TextContent.getreference | def getreference(self, validate=True):
"""Returns and validates the Text Content's reference. Raises UnresolvableTextContent when invalid"""
if self.offset is None: return None #nothing to test
if self.ref:
ref = self.doc[self.ref]
else:
ref = self.finddefaultref... | python | def getreference(self, validate=True):
if self.offset is None: return None #nothing to test
if self.ref:
ref = self.doc[self.ref]
else:
ref = self.finddefaultreference()
if not ref:
raise UnresolvableTextContent("Default reference for textcontent not ... | [
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21 | proycon/pynlpl | pynlpl/formats/folia.py | PhonContent.getreference | def getreference(self, validate=True):
"""Return and validate the Phonetic Content's reference. Raises UnresolvableTextContent when invalid"""
if self.offset is None: return None #nothing to test
if self.ref:
ref = self.doc[self.ref]
else:
ref = self.finddefaultr... | python | def getreference(self, validate=True):
if self.offset is None: return None #nothing to test
if self.ref:
ref = self.doc[self.ref]
else:
ref = self.finddefaultreference()
if not ref:
raise UnresolvableTextContent("Default reference for phonetic content... | [
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22 | proycon/pynlpl | pynlpl/formats/folia.py | Word.findspans | def findspans(self, type,set=None):
"""Yields span annotation elements of the specified type that include this word.
Arguments:
type: The annotation type, can be passed as using any of the :class:`AnnotationType` member, or by passing the relevant :class:`AbstractSpanAnnotation` or :class:`... | python | def findspans(self, type,set=None):
if issubclass(type, AbstractAnnotationLayer):
layerclass = type
else:
layerclass = ANNOTATIONTYPE2LAYERCLASS[type.ANNOTATIONTYPE]
e = self
while True:
if not e.parent: break
e = e.parent
for l... | [
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23 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractSpanAnnotation.setspan | def setspan(self, *args):
"""Sets the span of the span element anew, erases all data inside.
Arguments:
*args: Instances of :class:`Word`, :class:`Morpheme` or :class:`Phoneme`
"""
self.data = []
for child in args:
self.append(child) | python | def setspan(self, *args):
self.data = []
for child in args:
self.append(child) | [
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24 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractSpanAnnotation._helper_wrefs | def _helper_wrefs(self, targets, recurse=True):
"""Internal helper function"""
for c in self:
if isinstance(c,Word) or isinstance(c,Morpheme) or isinstance(c, Phoneme):
targets.append(c)
elif isinstance(c,WordReference):
try:
ta... | python | def _helper_wrefs(self, targets, recurse=True):
for c in self:
if isinstance(c,Word) or isinstance(c,Morpheme) or isinstance(c, Phoneme):
targets.append(c)
elif isinstance(c,WordReference):
try:
targets.append(self.doc[c.id]) #try to re... | [
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25 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractSpanAnnotation.wrefs | def wrefs(self, index = None, recurse=True):
"""Returns a list of word references, these can be Words but also Morphemes or Phonemes.
Arguments:
index (int or None): If set to an integer, will retrieve and return the n'th element (starting at 0) instead of returning the list of all
... | python | def wrefs(self, index = None, recurse=True):
targets =[]
self._helper_wrefs(targets, recurse)
if index is None:
return targets
else:
return targets[index] | [
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26 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractSpanAnnotation.copychildren | def copychildren(self, newdoc=None, idsuffix=""):
"""Generator creating a deep copy of the children of this element. If idsuffix is a string, if set to True, a random idsuffix will be generated including a random 32-bit hash"""
if idsuffix is True: idsuffix = ".copy." + "%08x" % random.getrandbits(32) #... | python | def copychildren(self, newdoc=None, idsuffix=""):
if idsuffix is True: idsuffix = ".copy." + "%08x" % random.getrandbits(32) #random 32-bit hash for each copy, same one will be reused for all children
for c in self:
if isinstance(c, Word):
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27 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractAnnotationLayer.alternatives | def alternatives(self, Class=None, set=None):
"""Generator over alternatives, either all or only of a specific annotation type, and possibly restrained also by set.
Arguments:
* ``Class`` - The Class you want to retrieve (e.g. PosAnnotation). Or set to None to select all alternatives regard... | python | def alternatives(self, Class=None, set=None):
for e in self.select(AlternativeLayers,None, True, ['Original','Suggestion']): #pylint: disable=too-many-nested-blocks
if Class is None:
yield e
elif len(e) >= 1: #child elements?
for e2 in e:
... | [
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28 | proycon/pynlpl | pynlpl/formats/folia.py | AbstractAnnotationLayer.findspan | def findspan(self, *words):
"""Returns the span element which spans over the specified words or morphemes.
See also:
:meth:`Word.findspans`
"""
for span in self.select(AbstractSpanAnnotation,None,True):
if tuple(span.wrefs()) == words:
return spa... | python | def findspan(self, *words):
for span in self.select(AbstractSpanAnnotation,None,True):
if tuple(span.wrefs()) == words:
return span
raise NoSuchAnnotation | [
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29 | proycon/pynlpl | pynlpl/formats/folia.py | Correction.hasnew | def hasnew(self,allowempty=False):
"""Does the correction define new corrected annotations?"""
for e in self.select(New,None,False, False):
if not allowempty and len(e) == 0: continue
return True
return False | python | def hasnew(self,allowempty=False):
for e in self.select(New,None,False, False):
if not allowempty and len(e) == 0: continue
return True
return False | [
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30 | proycon/pynlpl | pynlpl/formats/folia.py | Correction.hasoriginal | def hasoriginal(self,allowempty=False):
"""Does the correction record the old annotations prior to correction?"""
for e in self.select(Original,None,False, False):
if not allowempty and len(e) == 0: continue
return True
return False | python | def hasoriginal(self,allowempty=False):
for e in self.select(Original,None,False, False):
if not allowempty and len(e) == 0: continue
return True
return False | [
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31 | proycon/pynlpl | pynlpl/formats/folia.py | Correction.hassuggestions | def hassuggestions(self,allowempty=False):
"""Does the correction propose suggestions for correction?"""
for e in self.select(Suggestion,None,False, False):
if not allowempty and len(e) == 0: continue
return True
return False | python | def hassuggestions(self,allowempty=False):
for e in self.select(Suggestion,None,False, False):
if not allowempty and len(e) == 0: continue
return True
return False | [
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32 | proycon/pynlpl | pynlpl/formats/folia.py | Correction.new | def new(self,index = None):
"""Get the new corrected annotation.
This returns only one annotation if multiple exist, use `index` to select another in the sequence.
Returns:
an annotation element (:class:`AbstractElement`)
Raises:
:class:`NoSuchAnnotation`
... | python | def new(self,index = None):
if index is None:
try:
return next(self.select(New,None,False))
except StopIteration:
raise NoSuchAnnotation
else:
for e in self.select(New,None,False):
return e[index]
raise NoSuc... | [
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33 | proycon/pynlpl | pynlpl/formats/folia.py | Correction.original | def original(self,index=None):
"""Get the old annotation prior to correction.
This returns only one annotation if multiple exist, use `index` to select another in the sequence.
Returns:
an annotation element (:class:`AbstractElement`)
Raises:
:class:`NoSuchAnno... | python | def original(self,index=None):
if index is None:
try:
return next(self.select(Original,None,False, False))
except StopIteration:
raise NoSuchAnnotation
else:
for e in self.select(Original,None,False, False):
return e[ind... | [
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34 | proycon/pynlpl | pynlpl/formats/folia.py | Correction.suggestions | def suggestions(self,index=None):
"""Get suggestions for correction.
Yields:
:class:`Suggestion` element that encapsulate the suggested annotations (if index is ``None``, default)
Returns:
a :class:`Suggestion` element that encapsulate the suggested annotations (if inde... | python | def suggestions(self,index=None):
if index is None:
return self.select(Suggestion,None,False, False)
else:
for i, e in enumerate(self.select(Suggestion,None,False, False)):
if index == i:
return e
raise IndexError | [
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35 | proycon/pynlpl | pynlpl/formats/folia.py | Morpheme.findspans | def findspans(self, type,set=None):
"""Find span annotation of the specified type that include this word"""
if issubclass(type, AbstractAnnotationLayer):
layerclass = type
else:
layerclass = ANNOTATIONTYPE2LAYERCLASS[type.ANNOTATIONTYPE]
e = self
while Tru... | python | def findspans(self, type,set=None):
if issubclass(type, AbstractAnnotationLayer):
layerclass = type
else:
layerclass = ANNOTATIONTYPE2LAYERCLASS[type.ANNOTATIONTYPE]
e = self
while True:
if not e.parent: break
e = e.parent
for l... | [
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36 | proycon/pynlpl | pynlpl/formats/folia.py | Pattern.resolve | def resolve(self,size, distribution):
"""Resolve a variable sized pattern to all patterns of a certain fixed size"""
if not self.variablesize():
raise Exception("Can only resize patterns with * wildcards")
nrofwildcards = 0
for x in self.sequence:
if x == '*':
... | python | def resolve(self,size, distribution):
if not self.variablesize():
raise Exception("Can only resize patterns with * wildcards")
nrofwildcards = 0
for x in self.sequence:
if x == '*':
nrofwildcards += 1
assert (len(distribution) == nrofwildcards)
... | [
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37 | proycon/pynlpl | pynlpl/formats/folia.py | Document.load | def load(self, filename):
"""Load a FoLiA XML file.
Argument:
filename (str): The file to load
"""
#if LXE and self.mode != Mode.XPATH:
# #workaround for xml:id problem (disabled)
# #f = open(filename)
# #s = f.read().replace(' xml:id=', ' id... | python | def load(self, filename):
#if LXE and self.mode != Mode.XPATH:
# #workaround for xml:id problem (disabled)
# #f = open(filename)
# #s = f.read().replace(' xml:id=', ' id=')
# #f.close()
# self.tree = ElementTree.parse(filename)
#else:
self.t... | [
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38 | proycon/pynlpl | pynlpl/formats/folia.py | Document.items | def items(self):
"""Returns a depth-first flat list of all items in the document"""
l = []
for e in self.data:
l += e.items()
return l | python | def items(self):
l = []
for e in self.data:
l += e.items()
return l | [
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39 | proycon/pynlpl | pynlpl/formats/folia.py | Document.save | def save(self, filename=None):
"""Save the document to file.
Arguments:
* filename (str): The filename to save to. If not set (``None``, default), saves to the same file as loaded from.
"""
if not filename:
filename = self.filename
if not filename:
... | python | def save(self, filename=None):
if not filename:
filename = self.filename
if not filename:
raise Exception("No filename specified")
if filename[-4:].lower() == '.bz2':
f = bz2.BZ2File(filename,'wb')
f.write(self.xmlstring().encode('utf-8'))
... | [
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40 | proycon/pynlpl | pynlpl/formats/folia.py | Document.xmldeclarations | def xmldeclarations(self):
"""Internal method to generate XML nodes for all declarations"""
l = []
E = ElementMaker(namespace="http://ilk.uvt.nl/folia",nsmap={None: "http://ilk.uvt.nl/folia", 'xml' : "http://www.w3.org/XML/1998/namespace"})
for annotationtype, set in self.annotations:
... | python | def xmldeclarations(self):
l = []
E = ElementMaker(namespace="http://ilk.uvt.nl/folia",nsmap={None: "http://ilk.uvt.nl/folia", 'xml' : "http://www.w3.org/XML/1998/namespace"})
for annotationtype, set in self.annotations:
label = None
#Find the 'label' for the declaration... | [
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41 | proycon/pynlpl | pynlpl/formats/folia.py | Document.jsondeclarations | def jsondeclarations(self):
"""Return all declarations in a form ready to be serialised to JSON.
Returns:
list of dict
"""
l = []
for annotationtype, set in self.annotations:
label = None
#Find the 'label' for the declarations dynamically (aka... | python | def jsondeclarations(self):
l = []
for annotationtype, set in self.annotations:
label = None
#Find the 'label' for the declarations dynamically (aka: AnnotationType --> String)
for key, value in vars(AnnotationType).items():
if value == annotationtype:... | [
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42 | proycon/pynlpl | pynlpl/formats/folia.py | Document.xml | def xml(self):
"""Serialise the document to XML.
Returns:
lxml.etree.Element
See also:
:meth:`Document.xmlstring`
"""
self.pendingvalidation()
E = ElementMaker(namespace="http://ilk.uvt.nl/folia",nsmap={'xml' : "http://www.w3.org/XML/1998/names... | python | def xml(self):
self.pendingvalidation()
E = ElementMaker(namespace="http://ilk.uvt.nl/folia",nsmap={'xml' : "http://www.w3.org/XML/1998/namespace", 'xlink':"http://www.w3.org/1999/xlink"})
attribs = {}
attribs['{http://www.w3.org/XML/1998/namespace}id'] = self.id
#if self.versi... | [
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43 | proycon/pynlpl | pynlpl/formats/folia.py | Document.json | def json(self):
"""Serialise the document to a ``dict`` ready for serialisation to JSON.
Example::
import json
jsondoc = json.dumps(doc.json())
"""
self.pendingvalidation()
jsondoc = {'id': self.id, 'children': [], 'declarations': self.jsondeclarations(... | python | def json(self):
self.pendingvalidation()
jsondoc = {'id': self.id, 'children': [], 'declarations': self.jsondeclarations() }
if self.version:
jsondoc['version'] = self.version
else:
jsondoc['version'] = FOLIAVERSION
jsondoc['generator'] = 'pynlpl.formats.... | [
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44 | proycon/pynlpl | pynlpl/formats/folia.py | Document.xmlmetadata | def xmlmetadata(self):
"""Internal method to serialize metadata to XML"""
E = ElementMaker(namespace="http://ilk.uvt.nl/folia",nsmap={None: "http://ilk.uvt.nl/folia", 'xml' : "http://www.w3.org/XML/1998/namespace"})
elements = []
if self.metadatatype == "native":
if isinstanc... | python | def xmlmetadata(self):
E = ElementMaker(namespace="http://ilk.uvt.nl/folia",nsmap={None: "http://ilk.uvt.nl/folia", 'xml' : "http://www.w3.org/XML/1998/namespace"})
elements = []
if self.metadatatype == "native":
if isinstance(self.metadata, NativeMetaData):
for key, ... | [
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] | 7707f69a91caaa6cde037f0d0379f1d42500a68b | https://github.com/proycon/pynlpl/blob/7707f69a91caaa6cde037f0d0379f1d42500a68b/pynlpl/formats/folia.py#L6796-L6828 |
45 | proycon/pynlpl | pynlpl/formats/folia.py | Document.declare | def declare(self, annotationtype, set, **kwargs):
"""Declare a new annotation type to be used in the document.
Keyword arguments can be used to set defaults for any annotation of this type and set.
Arguments:
annotationtype: The type of annotation, this is conveyed by passing the c... | python | def declare(self, annotationtype, set, **kwargs):
if (sys.version > '3' and not isinstance(set,str)) or (sys.version < '3' and not isinstance(set,(str,unicode))):
raise ValueError("Set parameter for declare() must be a string")
if inspect.isclass(annotationtype):
annotationtype ... | [
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46 | proycon/pynlpl | pynlpl/formats/folia.py | Document.defaultset | def defaultset(self, annotationtype):
"""Obtain the default set for the specified annotation type.
Arguments:
annotationtype: The type of annotation, this is conveyed by passing the corresponding annototion class (such as :class:`PosAnnotation` for example), or a member of :class:`Annotatio... | python | def defaultset(self, annotationtype):
if inspect.isclass(annotationtype) or isinstance(annotationtype,AbstractElement): annotationtype = annotationtype.ANNOTATIONTYPE
try:
return list(self.annotationdefaults[annotationtype].keys())[0]
except KeyError:
raise NoDefaultError... | [
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47 | proycon/pynlpl | pynlpl/formats/folia.py | Document.defaultannotator | def defaultannotator(self, annotationtype, set=None):
"""Obtain the default annotator for the specified annotation type and set.
Arguments:
annotationtype: The type of annotation, this is conveyed by passing the corresponding annototion class (such as :class:`PosAnnotation` for example), or... | python | def defaultannotator(self, annotationtype, set=None):
if inspect.isclass(annotationtype) or isinstance(annotationtype,AbstractElement): annotationtype = annotationtype.ANNOTATIONTYPE
if not set: set = self.defaultset(annotationtype)
try:
return self.annotationdefaults[annotationtype]... | [
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48 | proycon/pynlpl | pynlpl/formats/folia.py | Document.parsemetadata | def parsemetadata(self, node):
"""Internal method to parse metadata"""
if 'type' in node.attrib:
self.metadatatype = node.attrib['type']
else:
#no type specified, default to native
self.metadatatype = "native"
if 'src' in node.attrib:
sel... | python | def parsemetadata(self, node):
if 'type' in node.attrib:
self.metadatatype = node.attrib['type']
else:
#no type specified, default to native
self.metadatatype = "native"
if 'src' in node.attrib:
self.metadata = ExternalMetaData(node.attrib['src'])... | [
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49 | proycon/pynlpl | pynlpl/formats/folia.py | Document.pendingvalidation | def pendingvalidation(self, warnonly=None):
"""Perform any pending validations
Parameters:
warnonly (bool): Warn only (True) or raise exceptions (False). If set to None then this value will be determined based on the document's FoLiA version (Warn only before FoLiA v1.5)
Returns:
... | python | def pendingvalidation(self, warnonly=None):
if self.debug: print("[PyNLPl FoLiA DEBUG] Processing pending validations (if any)",file=stderr)
if warnonly is None and self and self.version:
warnonly = (checkversion(self.version, '1.5.0') < 0) #warn only for documents older than FoLiA v1.5
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50 | proycon/pynlpl | pynlpl/formats/folia.py | Document.paragraphs | def paragraphs(self, index = None):
"""Return a generator of all paragraphs found in the document.
If an index is specified, return the n'th paragraph only (starting at 0)"""
if index is None:
return self.select(Paragraph)
else:
if index < 0:
inde... | python | def paragraphs(self, index = None):
if index is None:
return self.select(Paragraph)
else:
if index < 0:
index = sum(t.count(Paragraph) for t in self.data) + index
for t in self.data:
for i,e in enumerate(t.select(Paragraph)) :
... | [
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51 | proycon/pynlpl | pynlpl/formats/folia.py | Document.sentences | def sentences(self, index = None):
"""Return a generator of all sentence found in the document. Except for sentences in quotes.
If an index is specified, return the n'th sentence only (starting at 0)"""
if index is None:
return self.select(Sentence,None,True,[Quote])
else:
... | python | def sentences(self, index = None):
if index is None:
return self.select(Sentence,None,True,[Quote])
else:
if index < 0:
index = sum(t.count(Sentence,None,True,[Quote]) for t in self.data) + index
for t in self.data:
for i,e in enumerate... | [
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52 | proycon/pynlpl | pynlpl/fsa.py | NFA._states | def _states(self, state, processedstates=[]): #pylint: disable=dangerous-default-value
"""Iterate over all states in no particular order"""
processedstates.append(state)
for nextstate in state.epsilon:
if not nextstate in processedstates:
self._states(nextstate, proc... | python | def _states(self, state, processedstates=[]): #pylint: disable=dangerous-default-value
processedstates.append(state)
for nextstate in state.epsilon:
if not nextstate in processedstates:
self._states(nextstate, processedstates)
for _, nextstate in state.transitions:
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53 | proycon/pynlpl | pynlpl/common.py | log | def log(msg, **kwargs):
"""Generic log method. Will prepend timestamp.
Keyword arguments:
system - Name of the system/module
indent - Integer denoting the desired level of indentation
streams - List of streams to output to
stream - Stream to output to (singleton version of stream... | python | def log(msg, **kwargs):
if 'debug' in kwargs:
if 'currentdebug' in kwargs:
if kwargs['currentdebug'] < kwargs['debug']:
return False
else:
return False #no currentdebug passed, assuming no debug mode and thus skipping message
s = "[" + datetime.datetime.n... | [
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54 | proycon/pynlpl | pynlpl/clients/cornetto.py | CornettoClient.get_syn_ids_by_lemma | def get_syn_ids_by_lemma(self, lemma):
"""Returns a list of synset IDs based on a lemma"""
if not isinstance(lemma,unicode):
lemma = unicode(lemma,'utf-8')
http, resp, content = self.connect()
params = ""
fragment = ""
path = "cdb_syn"
if self.de... | python | def get_syn_ids_by_lemma(self, lemma):
if not isinstance(lemma,unicode):
lemma = unicode(lemma,'utf-8')
http, resp, content = self.connect()
params = ""
fragment = ""
path = "cdb_syn"
if self.debug:
printf( "cornettodb/views/query_remote_syn_... | [
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55 | proycon/pynlpl | pynlpl/clients/cornetto.py | CornettoClient.get_synset_xml | def get_synset_xml(self,syn_id):
"""
call cdb_syn with synset identifier -> returns the synset xml;
"""
http, resp, content = self.connect()
params = ""
fragment = ""
path = "cdb_syn"
if self.debug:
printf( "cornettodb/views/query_remote_s... | python | def get_synset_xml(self,syn_id):
http, resp, content = self.connect()
params = ""
fragment = ""
path = "cdb_syn"
if self.debug:
printf( "cornettodb/views/query_remote_syn_id: db_opt: %s" % path )
# output_opt: plain, html, xml
# 'xml' is actually ... | [
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56 | proycon/pynlpl | pynlpl/formats/dutchsemcor.py | WSDSystemOutput.senses | def senses(self, bestonly=False):
"""Returns a list of all predicted senses"""
l = []
for word_id, senses,distance in self:
for sense, confidence in senses:
if not sense in l: l.append(sense)
if bestonly:
break
return l | python | def senses(self, bestonly=False):
l = []
for word_id, senses,distance in self:
for sense, confidence in senses:
if not sense in l: l.append(sense)
if bestonly:
break
return l | [
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57 | proycon/pynlpl | pynlpl/clients/frogclient.py | FrogClient.align | def align(self,inputwords, outputwords):
"""For each inputword, provides the index of the outputword"""
alignment = []
cursor = 0
for inputword in inputwords:
if len(outputwords) > cursor and outputwords[cursor] == inputword:
alignment.append(cursor)
... | python | def align(self,inputwords, outputwords):
alignment = []
cursor = 0
for inputword in inputwords:
if len(outputwords) > cursor and outputwords[cursor] == inputword:
alignment.append(cursor)
cursor += 1
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58 | proycon/pynlpl | pynlpl/textprocessors.py | tokenize | def tokenize(text, regexps=TOKENIZERRULES):
"""Tokenizes a string and returns a list of tokens
:param text: The text to tokenise
:type text: string
:param regexps: Regular expressions to use as tokeniser rules in tokenisation (default=_pynlpl.textprocessors.TOKENIZERRULES_)
:type regexps: Tuple/li... | python | def tokenize(text, regexps=TOKENIZERRULES):
for i,regexp in list(enumerate(regexps)):
if isstring(regexp):
regexps[i] = re.compile(regexp)
tokens = []
begin = 0
for i, c in enumerate(text):
if begin > i:
continue
elif i == begin:
m = False
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59 | proycon/pynlpl | pynlpl/textprocessors.py | strip_accents | def strip_accents(s, encoding= 'utf-8'):
"""Strip characters with diacritics and return a flat ascii representation"""
if sys.version < '3':
if isinstance(s,unicode):
return unicodedata.normalize('NFKD', s).encode('ASCII', 'ignore')
else:
return unicodedata.normalize('NFKD'... | python | def strip_accents(s, encoding= 'utf-8'):
if sys.version < '3':
if isinstance(s,unicode):
return unicodedata.normalize('NFKD', s).encode('ASCII', 'ignore')
else:
return unicodedata.normalize('NFKD', unicode(s,encoding)).encode('ASCII', 'ignore')
else:
if isinstance(s... | [
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60 | proycon/pynlpl | pynlpl/textprocessors.py | swap | def swap(tokens, maxdist=2):
"""Perform a swap operation on a sequence of tokens, exhaustively swapping all tokens up to the maximum specified distance. This is a subset of all permutations."""
assert maxdist >= 2
tokens = list(tokens)
if maxdist > len(tokens):
maxdist = len(tokens)
l = len(... | python | def swap(tokens, maxdist=2):
assert maxdist >= 2
tokens = list(tokens)
if maxdist > len(tokens):
maxdist = len(tokens)
l = len(tokens)
for i in range(0,l - 1):
for permutation in permutations(tokens[i:i+maxdist]):
if permutation != tuple(tokens[i:i+maxdist]):
... | [
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61 | proycon/pynlpl | pynlpl/textprocessors.py | find_keyword_in_context | def find_keyword_in_context(tokens, keyword, contextsize=1):
"""Find a keyword in a particular sequence of tokens, and return the local context. Contextsize is the number of words to the left and right. The keyword may have multiple word, in which case it should to passed as a tuple or list"""
if isinstance(key... | python | def find_keyword_in_context(tokens, keyword, contextsize=1):
if isinstance(keyword,tuple) and isinstance(keyword,list):
l = len(keyword)
else:
keyword = (keyword,)
l = 1
n = l + contextsize*2
focuspos = contextsize + 1
for ngram in Windower(tokens,n,None,None):
if ngr... | [
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62 | proycon/pynlpl | pynlpl/datatypes.py | PriorityQueue.randomprune | def randomprune(self,n):
"""prune down to n items at random, disregarding their score"""
self.data = random.sample(self.data, n) | python | def randomprune(self,n):
self.data = random.sample(self.data, n) | [
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63 | proycon/pynlpl | pynlpl/datatypes.py | Tree.append | def append(self, item):
"""Add an item to the Tree"""
if not isinstance(item, Tree):
return ValueError("Can only append items of type Tree")
if not self.children: self.children = []
item.parent = self
self.children.append(item) | python | def append(self, item):
if not isinstance(item, Tree):
return ValueError("Can only append items of type Tree")
if not self.children: self.children = []
item.parent = self
self.children.append(item) | [
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64 | proycon/pynlpl | pynlpl/datatypes.py | Trie.size | def size(self):
"""Size is number of nodes under the trie, including the current node"""
if self.children:
return sum( ( c.size() for c in self.children.values() ) ) + 1
else:
return 1 | python | def size(self):
if self.children:
return sum( ( c.size() for c in self.children.values() ) ) + 1
else:
return 1 | [
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65 | proycon/pynlpl | pynlpl/formats/sonar.py | CorpusDocumentX.validate | def validate(self, formats_dir="../formats/"):
"""checks if the document is valid"""
#TODO: download XSD from web
if self.inline:
xmlschema = ElementTree.XMLSchema(ElementTree.parse(StringIO("\n".join(open(formats_dir+"dcoi-dsc.xsd").readlines()))))
xmlschema.assertValid(... | python | def validate(self, formats_dir="../formats/"):
#TODO: download XSD from web
if self.inline:
xmlschema = ElementTree.XMLSchema(ElementTree.parse(StringIO("\n".join(open(formats_dir+"dcoi-dsc.xsd").readlines()))))
xmlschema.assertValid(self.tree)
#return xmlschema.valid... | [
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66 | proycon/pynlpl | pynlpl/formats/sonar.py | CorpusDocumentX.xpath | def xpath(self, expression):
"""Executes an xpath expression using the correct namespaces"""
global namespaces
return self.tree.xpath(expression, namespaces=namespaces) | python | def xpath(self, expression):
global namespaces
return self.tree.xpath(expression, namespaces=namespaces) | [
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67 | proycon/pynlpl | pynlpl/formats/taggerdata.py | Taggerdata.align | def align(self, referencewords, datatuple):
"""align the reference sentence with the tagged data"""
targetwords = []
for i, (word,lemma,postag) in enumerate(zip(datatuple[0],datatuple[1],datatuple[2])):
if word:
subwords = word.split("_")
for w in subw... | python | def align(self, referencewords, datatuple):
targetwords = []
for i, (word,lemma,postag) in enumerate(zip(datatuple[0],datatuple[1],datatuple[2])):
if word:
subwords = word.split("_")
for w in subwords: #split multiword expressions
targetwor... | [
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68 | scrapinghub/js2xml | js2xml/lexer.py | CustomLexer.build | def build(self, **kwargs):
"""Build the lexer."""
self.lexer = ply.lex.lex(object=self, **kwargs) | python | def build(self, **kwargs):
self.lexer = ply.lex.lex(object=self, **kwargs) | [
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69 | mvantellingen/wsgi-basic-auth | src/wsgi_basic_auth.py | BasicAuth.is_authorized | def is_authorized(self, request):
"""Check if the user is authenticated for the given request.
The include_paths and exclude_paths are first checked. If
authentication is required then the Authorization HTTP header is
checked against the credentials.
"""
if self._is_req... | python | def is_authorized(self, request):
if self._is_request_in_include_path(request):
if self._is_request_in_exclude_path(request):
return True
else:
auth = request.authorization
if auth and auth[0] == 'Basic':
credentials = b... | [
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70 | mvantellingen/wsgi-basic-auth | src/wsgi_basic_auth.py | BasicAuth._login | def _login(self, environ, start_response):
"""Send a login response back to the client."""
response = HTTPUnauthorized()
response.www_authenticate = ('Basic', {'realm': self._realm})
return response(environ, start_response) | python | def _login(self, environ, start_response):
response = HTTPUnauthorized()
response.www_authenticate = ('Basic', {'realm': self._realm})
return response(environ, start_response) | [
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71 | mvantellingen/wsgi-basic-auth | src/wsgi_basic_auth.py | BasicAuth._is_request_in_include_path | def _is_request_in_include_path(self, request):
"""Check if the request path is in the `_include_paths` list.
If no specific include paths are given then we assume that
authentication is required for all paths.
"""
if self._include_paths:
for path in self._include_p... | python | def _is_request_in_include_path(self, request):
if self._include_paths:
for path in self._include_paths:
if request.path.startswith(path):
return True
return False
else:
return True | [
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72 | mvantellingen/wsgi-basic-auth | src/wsgi_basic_auth.py | BasicAuth._is_request_in_exclude_path | def _is_request_in_exclude_path(self, request):
"""Check if the request path is in the `_exclude_paths` list"""
if self._exclude_paths:
for path in self._exclude_paths:
if request.path.startswith(path):
return True
return False
else:
... | python | def _is_request_in_exclude_path(self, request):
if self._exclude_paths:
for path in self._exclude_paths:
if request.path.startswith(path):
return True
return False
else:
return False | [
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73 | click-contrib/click-repl | click_repl/__init__.py | bootstrap_prompt | def bootstrap_prompt(prompt_kwargs, group):
"""
Bootstrap prompt_toolkit kwargs or use user defined values.
:param prompt_kwargs: The user specified prompt kwargs.
"""
prompt_kwargs = prompt_kwargs or {}
defaults = {
"history": InMemoryHistory(),
"completer": ClickCompleter(gro... | python | def bootstrap_prompt(prompt_kwargs, group):
prompt_kwargs = prompt_kwargs or {}
defaults = {
"history": InMemoryHistory(),
"completer": ClickCompleter(group),
"message": u"> ",
}
for key in defaults:
default_value = defaults[key]
if key not in prompt_kwargs:
... | [
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74 | click-contrib/click-repl | click_repl/__init__.py | repl | def repl( # noqa: C901
old_ctx,
prompt_kwargs=None,
allow_system_commands=True,
allow_internal_commands=True,
):
"""
Start an interactive shell. All subcommands are available in it.
:param old_ctx: The current Click context.
:param prompt_kwargs: Parameters passed to
:py:func:`... | python | def repl( # noqa: C901
old_ctx,
prompt_kwargs=None,
allow_system_commands=True,
allow_internal_commands=True,
):
# parent should be available, but we're not going to bother if not
group_ctx = old_ctx.parent or old_ctx
group = group_ctx.command
isatty = sys.stdin.isatty()
# Delete t... | [
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75 | click-contrib/click-repl | click_repl/__init__.py | handle_internal_commands | def handle_internal_commands(command):
"""Run repl-internal commands.
Repl-internal commands are all commands starting with ":".
"""
if command.startswith(":"):
target = _get_registered_target(command[1:], default=None)
if target:
return target() | python | def handle_internal_commands(command):
if command.startswith(":"):
target = _get_registered_target(command[1:], default=None)
if target:
return target() | [
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76 | graphql-python/graphql-relay-py | graphql_relay/node/node.py | node_definitions | def node_definitions(id_fetcher, type_resolver=None, id_resolver=None):
'''
Given a function to map from an ID to an underlying object, and a function
to map from an underlying object to the concrete GraphQLObjectType it
corresponds to, constructs a `Node` interface that objects can implement,
and a... | python | def node_definitions(id_fetcher, type_resolver=None, id_resolver=None):
'''
Given a function to map from an ID to an underlying object, and a function
to map from an underlying object to the concrete GraphQLObjectType it
corresponds to, constructs a `Node` interface that objects can implement,
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77 | graphql-python/graphql-relay-py | graphql_relay/node/node.py | from_global_id | def from_global_id(global_id):
'''
Takes the "global ID" created by toGlobalID, and retuns the type name and ID
used to create it.
'''
unbased_global_id = unbase64(global_id)
_type, _id = unbased_global_id.split(':', 1)
return _type, _id | python | def from_global_id(global_id):
'''
Takes the "global ID" created by toGlobalID, and retuns the type name and ID
used to create it.
'''
unbased_global_id = unbase64(global_id)
_type, _id = unbased_global_id.split(':', 1)
return _type, _id | [
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78 | graphql-python/graphql-relay-py | graphql_relay/node/node.py | global_id_field | def global_id_field(type_name, id_fetcher=None):
'''
Creates the configuration for an id field on a node, using `to_global_id` to
construct the ID from the provided typename. The type-specific ID is fetcher
by calling id_fetcher on the object, or if not provided, by accessing the `id`
property on th... | python | def global_id_field(type_name, id_fetcher=None):
'''
Creates the configuration for an id field on a node, using `to_global_id` to
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79 | graphql-python/graphql-relay-py | graphql_relay/connection/arrayconnection.py | connection_from_list | def connection_from_list(data, args=None, **kwargs):
'''
A simple function that accepts an array and connection arguments, and returns
a connection object for use in GraphQL. It uses array offsets as pagination,
so pagination will only work if the array is static.
'''
_len = len(data)
return... | python | def connection_from_list(data, args=None, **kwargs):
'''
A simple function that accepts an array and connection arguments, and returns
a connection object for use in GraphQL. It uses array offsets as pagination,
so pagination will only work if the array is static.
'''
_len = len(data)
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80 | graphql-python/graphql-relay-py | graphql_relay/connection/arrayconnection.py | connection_from_promised_list | def connection_from_promised_list(data_promise, args=None, **kwargs):
'''
A version of `connectionFromArray` that takes a promised array, and returns a
promised connection.
'''
return data_promise.then(lambda data: connection_from_list(data, args, **kwargs)) | python | def connection_from_promised_list(data_promise, args=None, **kwargs):
'''
A version of `connectionFromArray` that takes a promised array, and returns a
promised connection.
'''
return data_promise.then(lambda data: connection_from_list(data, args, **kwargs)) | [
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81 | graphql-python/graphql-relay-py | graphql_relay/connection/arrayconnection.py | cursor_for_object_in_connection | def cursor_for_object_in_connection(data, _object):
'''
Return the cursor associated with an object in an array.
'''
if _object not in data:
return None
offset = data.index(_object)
return offset_to_cursor(offset) | python | def cursor_for_object_in_connection(data, _object):
'''
Return the cursor associated with an object in an array.
'''
if _object not in data:
return None
offset = data.index(_object)
return offset_to_cursor(offset) | [
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82 | graphql-python/graphql-relay-py | graphql_relay/connection/arrayconnection.py | get_offset_with_default | def get_offset_with_default(cursor=None, default_offset=0):
'''
Given an optional cursor and a default offset, returns the offset
to use; if the cursor contains a valid offset, that will be used,
otherwise it will be the default.
'''
if not is_str(cursor):
return default_offset
offs... | python | def get_offset_with_default(cursor=None, default_offset=0):
'''
Given an optional cursor and a default offset, returns the offset
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'''
if not is_str(cursor):
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83 | patrickfuller/jgraph | python/notebook.py | generate | def generate(data, iterations=1000, force_strength=5.0, dampening=0.01,
max_velocity=2.0, max_distance=50, is_3d=True):
"""Runs a force-directed algorithm on a graph, returning a data structure.
Args:
data: An adjacency list of tuples (ie. [(1,2),...])
iterations: (Optional) Number... | python | def generate(data, iterations=1000, force_strength=5.0, dampening=0.01,
max_velocity=2.0, max_distance=50, is_3d=True):
edges = [{'source': s, 'target': t} for s, t in data]
nodes = force_directed_layout.run(edges, iterations, force_strength,
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84 | patrickfuller/jgraph | python/json_formatter.py | compress | def compress(obj):
"""Outputs json without whitespace."""
return json.dumps(obj, sort_keys=True, separators=(',', ':'),
cls=CustomEncoder) | python | def compress(obj):
return json.dumps(obj, sort_keys=True, separators=(',', ':'),
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85 | patrickfuller/jgraph | python/json_formatter.py | dumps | def dumps(obj):
"""Outputs json with formatting edits + object handling."""
return json.dumps(obj, indent=4, sort_keys=True, cls=CustomEncoder) | python | def dumps(obj):
return json.dumps(obj, indent=4, sort_keys=True, cls=CustomEncoder) | [
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86 | patrickfuller/jgraph | python/json_formatter.py | CustomEncoder.encode | def encode(self, obj):
"""Fired for every object."""
s = super(CustomEncoder, self).encode(obj)
# If uncompressed, postprocess for formatting
if len(s.splitlines()) > 1:
s = self.postprocess(s)
return s | python | def encode(self, obj):
s = super(CustomEncoder, self).encode(obj)
# If uncompressed, postprocess for formatting
if len(s.splitlines()) > 1:
s = self.postprocess(s)
return s | [
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87 | patrickfuller/jgraph | python/json_formatter.py | CustomEncoder.postprocess | def postprocess(self, json_string):
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88 | patrickfuller/jgraph | python/force_directed_layout.py | run | def run(edges, iterations=1000, force_strength=5.0, dampening=0.01,
max_velocity=2.0, max_distance=50, is_3d=True):
"""Runs a force-directed-layout algorithm on the input graph.
iterations - Number of FDL iterations to run in coordinate generation
force_strength - Strength of Coulomb and Hooke forc... | python | def run(edges, iterations=1000, force_strength=5.0, dampening=0.01,
max_velocity=2.0, max_distance=50, is_3d=True):
# Get a list of node ids from the edge data
nodes = set(e['source'] for e in edges) | set(e['target'] for e in edges)
# Convert to a data-storing object and initialize some values
... | [
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89 | patrickfuller/jgraph | python/force_directed_layout.py | _coulomb | def _coulomb(n1, n2, k, r):
"""Calculates Coulomb forces and updates node data."""
# Get relevant positional data
delta = [x2 - x1 for x1, x2 in zip(n1['velocity'], n2['velocity'])]
distance = sqrt(sum(d ** 2 for d in delta))
# If the deltas are too small, use random values to keep things moving
... | python | def _coulomb(n1, n2, k, r):
# Get relevant positional data
delta = [x2 - x1 for x1, x2 in zip(n1['velocity'], n2['velocity'])]
distance = sqrt(sum(d ** 2 for d in delta))
# If the deltas are too small, use random values to keep things moving
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90 | pypyr/pypyr-cli | pypyr/steps/contextclearall.py | run_step | def run_step(context):
"""Wipe the entire context.
Args:
Context is a dictionary or dictionary-like.
Does not require any specific keys in context.
"""
logger.debug("started")
context.clear()
logger.info(f"Context wiped. New context size: {len(context)}")
logger.debug("don... | python | def run_step(context):
logger.debug("started")
context.clear()
logger.info(f"Context wiped. New context size: {len(context)}")
logger.debug("done") | [
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Args:
Context is a dictionary or dictionary-like.
Does not require any specific keys in context. | [
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] | 4003f999cd5eb030b4c7407317de728f5115a80f | https://github.com/pypyr/pypyr-cli/blob/4003f999cd5eb030b4c7407317de728f5115a80f/pypyr/steps/contextclearall.py#L8-L20 |
91 | pypyr/pypyr-cli | pypyr/steps/pathcheck.py | run_step | def run_step(context):
"""pypyr step that checks if a file or directory path exists.
Args:
context: pypyr.context.Context. Mandatory.
The following context key must exist
- pathsToCheck. str/path-like or list of str/paths.
Path to file on... | python | def run_step(context):
logger.debug("started")
context.assert_key_has_value(key='pathCheck', caller=__name__)
paths_to_check = context['pathCheck']
if not paths_to_check:
raise KeyInContextHasNoValueError("context['pathCheck'] must have a "
f"value for... | [
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Args:
context: pypyr.context.Context. Mandatory.
The following context key must exist
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Path to file on disk to check.
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92 | pypyr/pypyr-cli | pypyr/steps/filewritejson.py | run_step | def run_step(context):
"""Write payload out to json file.
Args:
context: pypyr.context.Context. Mandatory.
The following context keys expected:
- fileWriteJson
- path. mandatory. path-like. Write output file to
here. Will create... | python | def run_step(context):
logger.debug("started")
context.assert_child_key_has_value('fileWriteJson', 'path', __name__)
out_path = context.get_formatted_string(context['fileWriteJson']['path'])
# doing it like this to safeguard against accidentally dumping all context
# with potentially sensitive valu... | [
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Args:
context: pypyr.context.Context. Mandatory.
The following context keys expected:
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93 | pypyr/pypyr-cli | pypyr/steps/pype.py | run_step | def run_step(context):
"""Run another pipeline from this step.
The parent pipeline is the current, executing pipeline. The invoked, or
child pipeline is the pipeline you are calling from this step.
Args:
context: dictionary-like pypyr.context.Context. context is mandatory.
Use... | python | def run_step(context):
logger.debug("started")
(pipeline_name,
use_parent_context,
pipe_arg,
skip_parse,
raise_error,
loader,
) = get_arguments(context)
try:
if use_parent_context:
logger.info(f"pyping {pipeline_name}, using parent context.")
p... | [
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context: dictionary-like pypyr.context.Context. context is mandatory.
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94 | pypyr/pypyr-cli | pypyr/steps/pype.py | get_arguments | def get_arguments(context):
"""Parse arguments for pype from context and assign default values.
Args:
context: pypyr.context.Context. context is mandatory.
Returns:
tuple (pipeline_name, #str
use_parent_context, #bool
pipe_arg, #str
skip_parse, ... | python | def get_arguments(context):
context.assert_key_has_value(key='pype', caller=__name__)
pype = context.get_formatted('pype')
try:
pipeline_name = pype['name']
if pipeline_name is None:
raise KeyInContextHasNoValueError(
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Args:
context: pypyr.context.Context. context is mandatory.
Returns:
tuple (pipeline_name, #str
use_parent_context, #bool
pipe_arg, #str
skip_parse, #bool
raise_error #b... | [
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95 | pypyr/pypyr-cli | pypyr/pypeloaders/fileloader.py | get_pipeline_path | def get_pipeline_path(pipeline_name, working_directory):
"""Look for the pipeline in the various places it could be.
First checks the cwd. Then checks pypyr/pipelines dir.
Args:
pipeline_name: string. Name of pipeline to find
working_directory: string. Path in which to look for pipeline_na... | python | def get_pipeline_path(pipeline_name, working_directory):
logger.debug("starting")
# look for name.yaml in the pipelines/ sub-directory
logger.debug(f"current directory is {working_directory}")
# looking for {cwd}/pipelines/[pipeline_name].yaml
pipeline_path = os.path.abspath(os.path.join(
... | [
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First checks the cwd. Then checks pypyr/pipelines dir.
Args:
pipeline_name: string. Name of pipeline to find
working_directory: string. Path in which to look for pipeline_name.yaml
Returns:
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96 | pypyr/pypyr-cli | pypyr/pypeloaders/fileloader.py | get_pipeline_definition | def get_pipeline_definition(pipeline_name, working_dir):
"""Open and parse the pipeline definition yaml.
Parses pipeline yaml and returns dictionary representing the pipeline.
pipeline_name.yaml should be in the working_dir/pipelines/ directory.
Args:
pipeline_name: string. Name of pipeline. ... | python | def get_pipeline_definition(pipeline_name, working_dir):
logger.debug("starting")
pipeline_path = get_pipeline_path(
pipeline_name=pipeline_name,
working_directory=working_dir)
logger.debug(f"Trying to open pipeline at path {pipeline_path}")
try:
with open(pipeline_path) as yam... | [
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Parses pipeline yaml and returns dictionary representing the pipeline.
pipeline_name.yaml should be in the working_dir/pipelines/ directory.
Args:
pipeline_name: string. Name of pipeline. This will be the file-name of
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97 | pypyr/pypyr-cli | pypyr/dsl.py | SpecialTagDirective.to_yaml | def to_yaml(cls, representer, node):
"""How to serialize this class back to yaml."""
return representer.represent_scalar(cls.yaml_tag, node.value) | python | def to_yaml(cls, representer, node):
return representer.represent_scalar(cls.yaml_tag, node.value) | [
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] | 4003f999cd5eb030b4c7407317de728f5115a80f | https://github.com/pypyr/pypyr-cli/blob/4003f999cd5eb030b4c7407317de728f5115a80f/pypyr/dsl.py#L55-L57 |
98 | pypyr/pypyr-cli | pypyr/dsl.py | PyString.get_value | def get_value(self, context):
"""Run python eval on the input string."""
if self.value:
return expressions.eval_string(self.value, context)
else:
# Empty input raises cryptic EOF syntax err, this more human
# friendly
raise ValueError('!py string e... | python | def get_value(self, context):
if self.value:
return expressions.eval_string(self.value, context)
else:
# Empty input raises cryptic EOF syntax err, this more human
# friendly
raise ValueError('!py string expression is empty. It must be a '
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... | Run python eval on the input string. | [
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99 | pypyr/pypyr-cli | pypyr/dsl.py | Step.foreach_loop | def foreach_loop(self, context):
"""Run step once for each item in foreach_items.
On each iteration, the invoked step can use context['i'] to get the
current iterator value.
Args:
context: (pypyr.context.Context) The pypyr context. This arg will
mutate.... | python | def foreach_loop(self, context):
logger.debug("starting")
# Loop decorators only evaluated once, not for every step repeat
# execution.
foreach = context.get_formatted_iterable(self.foreach_items)
foreach_length = len(foreach)
logger.info(f"foreach decorator will loop ... | [
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Args:
context: (pypyr.context.Context) The pypyr context. This arg will
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