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imfuse23_fold1/wandb/debug-internal.log
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imfuse23_fold1/wandb/debug.log
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2026-07-19 13:55:57,422 INFO MainThread:2602962 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-19 13:55:57,423 INFO MainThread:2602962 [wandb_setup.py:_flush():81] Configure stats pid to 2602962
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2026-07-19 13:55:57,423 INFO MainThread:2602962 [wandb_setup.py:_flush():81] Loading settings from environment variables
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2026-07-19 13:55:57,424 INFO MainThread:2602962 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/logs/debug.log
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2026-07-19 13:55:57,425 INFO MainThread:2602962 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/logs/debug-internal.log
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2026-07-19 13:55:57,426 INFO MainThread:2602962 [wandb_init.py:init():850] calling init triggers
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2026-07-19 13:55:57,426 INFO MainThread:2602962 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
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config: {'input_dir': '/work/phd_mimose/imfuse-preprocessed', 'output_dir': '/work/phd_mimose/runs/imfuse23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMFuse', 'model_kwargs': {'interleaved_tokenization': True, 'mamba_skip': True, 'num_cls': 4}, 'optimizer_class': 'RAdam', 'optimizer': {'lr': 0.0004, 'weight_decay': 3e-05, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMFuseLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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2026-07-19 13:55:57,426 INFO MainThread:2602962 [wandb_init.py:init():898] starting backend
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2026-07-19 13:55:57,828 INFO MainThread:2602962 [wandb_init.py:init():913] sending inform_init request
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2026-07-19 13:55:58,443 INFO MainThread:2602962 [wandb_init.py:init():918] backend started and connected
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2026-07-19 13:55:58,447 INFO MainThread:2602962 [wandb_init.py:init():988] updated telemetry
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2026-07-19 13:55:58,499 INFO MainThread:2602962 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
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2026-07-19 13:55:58,967 INFO MainThread:2602962 [wandb_init.py:init():1051] run resumed
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2026-07-19 13:55:58,972 INFO MainThread:2602962 [wandb_init.py:init():1056] starting run threads in backend
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2026-07-19 13:55:59,529 INFO MainThread:2602962 [wandb_run.py:_console_start():2554] atexit reg
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2026-07-19 13:55:59,530 INFO MainThread:2602962 [wandb_run.py:_redirect():2472] Wrapping output streams.
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2026-07-19 13:55:59,530 INFO MainThread:2602962 [wandb_run.py:_redirect():2495] Redirects installed.
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2026-07-19 13:55:59,534 INFO MainThread:2602962 [wandb_init.py:init():1094] run started, returning control to user process
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imfuse23_fold1/wandb/run-20260717_095847-ep44kzjy/files/requirements.txt
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| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
+
nvidia-nccl-cu12==2.27.5
|
| 6 |
+
regex==2026.6.28
|
| 7 |
+
ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
+
idna==3.13
|
| 11 |
+
annotated-types==0.7.0
|
| 12 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
+
typing-inspection==0.4.2
|
| 16 |
+
ninja==1.13.0
|
| 17 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
+
MarkupSafe==3.0.3
|
| 48 |
+
timm==1.0.22
|
| 49 |
+
charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
+
threadpoolctl==3.6.0
|
| 53 |
+
anyio==4.13.0
|
| 54 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
+
mamba-ssm==2.3.2.post1
|
| 63 |
+
psutil==7.2.2
|
| 64 |
+
filelock==3.29.0
|
| 65 |
+
httpx==0.28.1
|
| 66 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
+
markdown-it-py==4.0.0
|
| 68 |
+
urllib3==2.6.3
|
| 69 |
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h11==0.16.0
|
| 70 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 71 |
+
pyparsing==3.3.2
|
| 72 |
+
annotated-doc==0.0.4
|
| 73 |
+
hf-xet==1.4.3
|
| 74 |
+
cuda-pathfinder==1.5.6
|
| 75 |
+
platformdirs==4.9.6
|
| 76 |
+
MedPy==0.5.2
|
| 77 |
+
einops==0.8.2
|
| 78 |
+
wheel==0.47.0
|
| 79 |
+
tqdm==4.67.3
|
| 80 |
+
h5py==3.16.0
|
| 81 |
+
protobuf==6.33.6
|
| 82 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
+
fsspec==2026.4.0
|
| 84 |
+
ttkbootstrap==1.20.2
|
| 85 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
+
mpmath==1.3.0
|
| 87 |
+
rich==15.0.0
|
| 88 |
+
pillow==12.2.0
|
| 89 |
+
cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
+
joblib==1.5.3
|
| 93 |
+
pydantic==2.13.3
|
| 94 |
+
nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
+
openpyxl==3.1.5
|
| 96 |
+
huggingface_hub==1.13.0
|
| 97 |
+
torchvision==0.24.1
|
| 98 |
+
sentry-sdk==2.58.0
|
| 99 |
+
cuda-core==1.0.1
|
| 100 |
+
apache-tvm-ffi==0.1.9
|
| 101 |
+
wandb==0.26.1
|
| 102 |
+
fonttools==4.62.1
|
| 103 |
+
Pygments==2.20.0
|
| 104 |
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triton==3.5.1
|
| 105 |
+
setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
+
scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
+
mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
+
pluggy==1.6.0
|
| 119 |
+
ruff==0.15.12
|
| 120 |
+
librt==0.9.0
|
| 121 |
+
pathspec==1.1.1
|
| 122 |
+
pytest==9.0.3
|
| 123 |
+
mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
imfuse23_fold1/wandb/run-20260717_095847-ep44kzjy/files/wandb-metadata.json
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
| 3 |
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"python": "CPython 3.12.13",
|
| 4 |
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"startedAt": "2026-07-17T07:58:47.345820Z",
|
| 5 |
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"args": [
|
| 6 |
+
"train",
|
| 7 |
+
"--config",
|
| 8 |
+
"imfuse_23.yaml",
|
| 9 |
+
"--fold",
|
| 10 |
+
"1",
|
| 11 |
+
"--run-suffix",
|
| 12 |
+
"fold1",
|
| 13 |
+
"--seed",
|
| 14 |
+
"0",
|
| 15 |
+
"--try-resume"
|
| 16 |
+
],
|
| 17 |
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"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
|
| 18 |
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| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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"commit": "210b4b036fc8ef05a1259b830025b1633fe5fb48"
|
| 23 |
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},
|
| 24 |
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"root": "/work/phd_mimose/runs/imfuse23_fold1",
|
| 25 |
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"host": "labetty",
|
| 26 |
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"executable": "/homes/ocarpentiero/MiMoSe/.venv/bin/python3",
|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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"disk": {
|
| 32 |
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| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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|
| 38 |
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|
| 39 |
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| 40 |
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|
| 41 |
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|
| 42 |
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| 43 |
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| 44 |
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|
| 45 |
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|
| 46 |
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"uuid": "GPU-b98f3d94-ebca-943a-efa1-dff65ce445a1"
|
| 47 |
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}
|
| 48 |
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],
|
| 49 |
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"cudaVersion": "13.2",
|
| 50 |
+
"slurm": {
|
| 51 |
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"cluster_name": "aimagelab",
|
| 52 |
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"conf": "/etc/slurm/slurm.conf",
|
| 53 |
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"cpus_on_node": "8",
|
| 54 |
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"cpus_per_task": "8",
|
| 55 |
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"gpus_on_node": "1",
|
| 56 |
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"gtids": "0",
|
| 57 |
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"job_account": "phd_mimose",
|
| 58 |
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|
| 59 |
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"job_dependency": "singleton",
|
| 60 |
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"job_end_time": "1784361505",
|
| 61 |
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"job_gid": "502",
|
| 62 |
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"job_gpus": "3",
|
| 63 |
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"job_id": "67724",
|
| 64 |
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"job_name": "IM_FUSO23_FOLD_1",
|
| 65 |
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"job_nodelist": "labetty",
|
| 66 |
+
"job_num_nodes": "1",
|
| 67 |
+
"job_partition": "boost_usr_prod",
|
| 68 |
+
"job_qos": "normal",
|
| 69 |
+
"job_start_time": "1784275105",
|
| 70 |
+
"job_uid": "92375",
|
| 71 |
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"job_user": "ocarpentiero",
|
| 72 |
+
"jobid": "67724",
|
| 73 |
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"localid": "0",
|
| 74 |
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"mem_per_node": "102400",
|
| 75 |
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"nnodes": "1",
|
| 76 |
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"nodeid": "0",
|
| 77 |
+
"nodelist": "labetty",
|
| 78 |
+
"nprocs": "1",
|
| 79 |
+
"ntasks": "1",
|
| 80 |
+
"oom_kill_step": "0",
|
| 81 |
+
"prio_process": "0",
|
| 82 |
+
"procid": "0",
|
| 83 |
+
"submit_dir": "/homes/ocarpentiero/MiMoSe",
|
| 84 |
+
"submit_host": "ailb-login-03",
|
| 85 |
+
"task_pid": "1435491",
|
| 86 |
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"tasks_per_node": "1",
|
| 87 |
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"topology_addr": "labetty",
|
| 88 |
+
"topology_addr_pattern": "node",
|
| 89 |
+
"tres_per_task": "cpu=8"
|
| 90 |
+
},
|
| 91 |
+
"writerId": "fsbtunfwv4o0eap3b0cgbcnh9if0hqa6"
|
| 92 |
+
}
|
imfuse23_fold1/wandb/run-20260717_095847-ep44kzjy/logs/debug-core.log
ADDED
|
@@ -0,0 +1,7 @@
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|
| 1 |
+
{"time":"2026-07-17T09:58:47.931110053+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmp34a17_tn/port-1435494.txt","pid":1435494,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 2 |
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{"time":"2026-07-17T09:58:47.931666481+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":1435494}
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| 3 |
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{"time":"2026-07-17T09:58:47.931627222+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-1435494-1435546-2536473398/socket","Net":"unix"}}
|
| 4 |
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{"time":"2026-07-17T09:58:48.107380189+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
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| 5 |
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{"time":"2026-07-17T09:58:48.141425165+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"ep44kzjy","id":"1(@)"}
|
| 6 |
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{"time":"2026-07-17T09:58:48.607908118+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"ep44kzjy","id":"1(@)"}
|
| 7 |
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{"time":"2026-07-17T09:58:54.257403967+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"ndrj1gnm52yx"}
|
imfuse23_fold1/wandb/run-20260717_095847-ep44kzjy/logs/debug-internal.log
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
imfuse23_fold1/wandb/run-20260717_095847-ep44kzjy/logs/debug.log
ADDED
|
@@ -0,0 +1,19 @@
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|
|
|
|
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|
| 1 |
+
2026-07-17 09:58:47,668 INFO MainThread:1435494 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-17 09:58:47,668 INFO MainThread:1435494 [wandb_setup.py:_flush():81] Configure stats pid to 1435494
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| 3 |
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2026-07-17 09:58:47,668 INFO MainThread:1435494 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
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2026-07-17 09:58:47,670 INFO MainThread:1435494 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260717_095847-ep44kzjy/logs/debug.log
|
| 5 |
+
2026-07-17 09:58:47,671 INFO MainThread:1435494 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260717_095847-ep44kzjy/logs/debug-internal.log
|
| 6 |
+
2026-07-17 09:58:47,671 INFO MainThread:1435494 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-17 09:58:47,671 INFO MainThread:1435494 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/imfuse-preprocessed', 'output_dir': '/work/phd_mimose/runs/imfuse23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMFuse', 'model_kwargs': {'interleaved_tokenization': True, 'mamba_skip': True, 'num_cls': 4}, 'optimizer_class': 'RAdam', 'optimizer': {'lr': 0.0004, 'weight_decay': 3e-05, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMFuseLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-17 09:58:47,671 INFO MainThread:1435494 [wandb_init.py:init():898] starting backend
|
| 10 |
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2026-07-17 09:58:48,107 INFO MainThread:1435494 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
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2026-07-17 09:58:48,609 INFO MainThread:1435494 [wandb_init.py:init():918] backend started and connected
|
| 12 |
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2026-07-17 09:58:48,613 INFO MainThread:1435494 [wandb_init.py:init():988] updated telemetry
|
| 13 |
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2026-07-17 09:58:48,657 INFO MainThread:1435494 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
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2026-07-17 09:58:49,021 INFO MainThread:1435494 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
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2026-07-17 09:58:49,249 INFO MainThread:1435494 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
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2026-07-17 09:58:49,249 INFO MainThread:1435494 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
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2026-07-17 09:58:49,249 INFO MainThread:1435494 [wandb_run.py:_redirect():2472] Wrapping output streams.
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| 18 |
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2026-07-17 09:58:49,249 INFO MainThread:1435494 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
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2026-07-17 09:58:49,254 INFO MainThread:1435494 [wandb_init.py:init():1094] run started, returning control to user process
|
imfuse23_fold1/wandb/run-20260718_080322-ep44kzjy/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
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|
|
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|
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|
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|
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|
|
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|
|
|
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|
|
|
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|
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|
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|
|
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|
|
|
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|
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|
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|
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|
|
|
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|
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|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
+
nvidia-nccl-cu12==2.27.5
|
| 6 |
+
regex==2026.6.28
|
| 7 |
+
ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
+
idna==3.13
|
| 11 |
+
annotated-types==0.7.0
|
| 12 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
+
typing-inspection==0.4.2
|
| 16 |
+
ninja==1.13.0
|
| 17 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
+
MarkupSafe==3.0.3
|
| 48 |
+
timm==1.0.22
|
| 49 |
+
charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
+
threadpoolctl==3.6.0
|
| 53 |
+
anyio==4.13.0
|
| 54 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
+
mamba-ssm==2.3.2.post1
|
| 63 |
+
psutil==7.2.2
|
| 64 |
+
filelock==3.29.0
|
| 65 |
+
httpx==0.28.1
|
| 66 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
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markdown-it-py==4.0.0
|
| 68 |
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urllib3==2.6.3
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| 69 |
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h11==0.16.0
|
| 70 |
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nvidia-nvshmem-cu12==3.3.20
|
| 71 |
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pyparsing==3.3.2
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| 72 |
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annotated-doc==0.0.4
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hf-xet==1.4.3
|
| 74 |
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cuda-pathfinder==1.5.6
|
| 75 |
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platformdirs==4.9.6
|
| 76 |
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MedPy==0.5.2
|
| 77 |
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einops==0.8.2
|
| 78 |
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wheel==0.47.0
|
| 79 |
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tqdm==4.67.3
|
| 80 |
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h5py==3.16.0
|
| 81 |
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protobuf==6.33.6
|
| 82 |
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nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
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fsspec==2026.4.0
|
| 84 |
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ttkbootstrap==1.20.2
|
| 85 |
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nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
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mpmath==1.3.0
|
| 87 |
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rich==15.0.0
|
| 88 |
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pillow==12.2.0
|
| 89 |
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cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
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joblib==1.5.3
|
| 93 |
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pydantic==2.13.3
|
| 94 |
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nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
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openpyxl==3.1.5
|
| 96 |
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huggingface_hub==1.13.0
|
| 97 |
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torchvision==0.24.1
|
| 98 |
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sentry-sdk==2.58.0
|
| 99 |
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cuda-core==1.0.1
|
| 100 |
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apache-tvm-ffi==0.1.9
|
| 101 |
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wandb==0.26.1
|
| 102 |
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fonttools==4.62.1
|
| 103 |
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Pygments==2.20.0
|
| 104 |
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triton==3.5.1
|
| 105 |
+
setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
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scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
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pandas==3.0.2
|
| 112 |
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sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
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tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
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mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
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pluggy==1.6.0
|
| 119 |
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ruff==0.15.12
|
| 120 |
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librt==0.9.0
|
| 121 |
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pathspec==1.1.1
|
| 122 |
+
pytest==9.0.3
|
| 123 |
+
mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
imfuse23_fold1/wandb/run-20260718_080322-ep44kzjy/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,92 @@
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
| 3 |
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"python": "CPython 3.12.13",
|
| 4 |
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"startedAt": "2026-07-18T08:03:22.199217Z",
|
| 5 |
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"args": [
|
| 6 |
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"train",
|
| 7 |
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"--config",
|
| 8 |
+
"imfuse_23.yaml",
|
| 9 |
+
"--fold",
|
| 10 |
+
"1",
|
| 11 |
+
"--run-suffix",
|
| 12 |
+
"fold1",
|
| 13 |
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"--seed",
|
| 14 |
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"0",
|
| 15 |
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"--try-resume"
|
| 16 |
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],
|
| 17 |
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| 18 |
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| 19 |
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| 20 |
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|
| 21 |
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| 22 |
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| 23 |
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},
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| 24 |
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"root": "/work/phd_mimose/runs/imfuse23_fold1",
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| 25 |
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| 50 |
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| 51 |
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"cluster_name": "aimagelab",
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| 52 |
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"conf": "/etc/slurm/slurm.conf",
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| 53 |
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| 54 |
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| 65 |
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| 66 |
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"job_num_nodes": "1",
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| 67 |
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"job_partition": "boost_usr_prod",
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| 68 |
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"job_start_time": "1784361724",
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| 70 |
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| 72 |
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| 78 |
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| 79 |
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| 80 |
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| 81 |
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| 82 |
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| 83 |
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"submit_dir": "/homes/ocarpentiero/MiMoSe",
|
| 84 |
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"submit_host": "ailb-login-03",
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| 85 |
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| 86 |
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| 87 |
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"topology_addr": "mereu",
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| 88 |
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"topology_addr_pattern": "node",
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| 89 |
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"tres_per_task": "cpu=8"
|
| 90 |
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},
|
| 91 |
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"writerId": "blnqq4xfbhmuqy4nlaxpzaasp1fx1ncd"
|
| 92 |
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}
|
imfuse23_fold1/wandb/run-20260718_080322-ep44kzjy/logs/debug-core.log
ADDED
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@@ -0,0 +1,7 @@
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|
|
|
|
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|
| 1 |
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{"time":"2026-07-18T08:03:22.907232698Z","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmpmg783juz/port-1731974.txt","pid":1731974,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
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| 2 |
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{"time":"2026-07-18T08:03:22.908539617Z","level":"INFO","msg":"server: will exit if parent process dies","ppid":1731974}
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| 3 |
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{"time":"2026-07-18T08:03:22.908418553Z","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-1731974-1732802-1264431434/socket","Net":"unix"}}
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{"time":"2026-07-18T08:03:23.07387739Z","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
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{"time":"2026-07-18T08:03:23.115363841Z","level":"INFO","msg":"handleInformInit: received","streamId":"ep44kzjy","id":"1(@)"}
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{"time":"2026-07-18T08:03:23.489431606Z","level":"INFO","msg":"handleInformInit: stream started","streamId":"ep44kzjy","id":"1(@)"}
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imfuse23_fold1/wandb/run-20260718_080322-ep44kzjy/logs/debug-internal.log
ADDED
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The diff for this file is too large to render.
See raw diff
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|
imfuse23_fold1/wandb/run-20260718_080322-ep44kzjy/logs/debug.log
ADDED
|
@@ -0,0 +1,20 @@
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|
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|
|
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|
|
| 1 |
+
2026-07-18 08:03:22,662 INFO MainThread:1731974 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-18 08:03:22,662 INFO MainThread:1731974 [wandb_setup.py:_flush():81] Configure stats pid to 1731974
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| 3 |
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2026-07-18 08:03:22,662 INFO MainThread:1731974 [wandb_setup.py:_flush():81] Loading settings from environment variables
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2026-07-18 08:03:22,664 INFO MainThread:1731974 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260718_080322-ep44kzjy/logs/debug.log
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| 5 |
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2026-07-18 08:03:22,665 INFO MainThread:1731974 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260718_080322-ep44kzjy/logs/debug-internal.log
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| 6 |
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2026-07-18 08:03:22,666 INFO MainThread:1731974 [wandb_init.py:init():850] calling init triggers
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| 7 |
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2026-07-18 08:03:22,666 INFO MainThread:1731974 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
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config: {'input_dir': '/work/phd_mimose/imfuse-preprocessed', 'output_dir': '/work/phd_mimose/runs/imfuse23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMFuse', 'model_kwargs': {'interleaved_tokenization': True, 'mamba_skip': True, 'num_cls': 4}, 'optimizer_class': 'RAdam', 'optimizer': {'lr': 0.0004, 'weight_decay': 3e-05, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMFuseLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
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2026-07-18 08:03:22,666 INFO MainThread:1731974 [wandb_init.py:init():898] starting backend
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| 10 |
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2026-07-18 08:03:23,074 INFO MainThread:1731974 [wandb_init.py:init():913] sending inform_init request
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2026-07-18 08:03:23,491 INFO MainThread:1731974 [wandb_init.py:init():918] backend started and connected
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2026-07-18 08:03:23,495 INFO MainThread:1731974 [wandb_init.py:init():988] updated telemetry
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2026-07-18 08:03:23,556 INFO MainThread:1731974 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
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2026-07-18 08:03:24,034 INFO MainThread:1731974 [wandb_init.py:init():1051] run resumed
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2026-07-18 08:03:24,038 INFO MainThread:1731974 [wandb_init.py:init():1056] starting run threads in backend
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2026-07-18 08:03:24,611 INFO MainThread:1731974 [wandb_run.py:_console_start():2554] atexit reg
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2026-07-18 08:03:24,611 INFO MainThread:1731974 [wandb_run.py:_redirect():2403] redirect: wrap_raw
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| 18 |
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2026-07-18 08:03:24,611 INFO MainThread:1731974 [wandb_run.py:_redirect():2472] Wrapping output streams.
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2026-07-18 08:03:24,611 INFO MainThread:1731974 [wandb_run.py:_redirect():2495] Redirects installed.
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2026-07-18 08:03:24,620 INFO MainThread:1731974 [wandb_init.py:init():1094] run started, returning control to user process
|
imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
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|
| 1 |
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six==1.17.0
|
| 2 |
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nvidia-cutlass-dsl==4.6.0
|
| 3 |
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et_xmlfile==2.0.0
|
| 4 |
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certifi==2026.4.22
|
| 5 |
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nvidia-nccl-cu12==2.27.5
|
| 6 |
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regex==2026.6.28
|
| 7 |
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ml_dtypes==0.5.4
|
| 8 |
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simpleitk==2.5.4
|
| 9 |
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kiwisolver==1.5.0
|
| 10 |
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idna==3.13
|
| 11 |
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annotated-types==0.7.0
|
| 12 |
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nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
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cycler==0.12.1
|
| 14 |
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ptflops==0.7.5
|
| 15 |
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typing-inspection==0.4.2
|
| 16 |
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ninja==1.13.0
|
| 17 |
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nvidia-cufile-cu12==1.13.1.3
|
| 18 |
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nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
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cloudpickle==3.1.2
|
| 20 |
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python-dateutil==2.9.0.post0
|
| 21 |
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tokenizers==0.22.2
|
| 22 |
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packaging==26.2
|
| 23 |
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wcwidth==0.6.0
|
| 24 |
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safetensors==0.7.0
|
| 25 |
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torch_c_dlpack_ext==0.1.5
|
| 26 |
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mdurl==0.1.2
|
| 27 |
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click==8.3.3
|
| 28 |
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Jinja2==3.1.6
|
| 29 |
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dynamic_network_architectures==0.4.3
|
| 30 |
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contourpy==1.3.3
|
| 31 |
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pydantic_core==2.46.3
|
| 32 |
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nvidia-curand-cu12==10.3.9.90
|
| 33 |
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PyYAML==6.0.3
|
| 34 |
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GitPython==3.1.49
|
| 35 |
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gitdb==4.0.12
|
| 36 |
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nvidia-cusparselt-cu12==0.7.1
|
| 37 |
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nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
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z3-solver==4.15.4.0
|
| 39 |
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nvidia-nvtx-cu12==12.8.90
|
| 40 |
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nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
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nvidia-cufft-cu12==11.3.3.83
|
| 42 |
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httpcore==1.0.9
|
| 43 |
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cuda-python==13.3.1
|
| 44 |
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MiMoSe==0.0.2
|
| 45 |
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nvidia-cublas-cu12==12.8.4.1
|
| 46 |
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nodeocc==1.0.26
|
| 47 |
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MarkupSafe==3.0.3
|
| 48 |
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timm==1.0.22
|
| 49 |
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charset-normalizer==3.4.7
|
| 50 |
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thop==0.1.1-2209072238
|
| 51 |
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shellingham==1.5.4
|
| 52 |
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threadpoolctl==3.6.0
|
| 53 |
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anyio==4.13.0
|
| 54 |
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nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
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smmap==5.0.3
|
| 56 |
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nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
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nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
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typer==0.25.0
|
| 59 |
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typing_extensions==4.15.0
|
| 60 |
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causal-conv1d==1.6.2.post1
|
| 61 |
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requests==2.33.1
|
| 62 |
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mamba-ssm==2.3.2.post1
|
| 63 |
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psutil==7.2.2
|
| 64 |
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filelock==3.29.0
|
| 65 |
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httpx==0.28.1
|
| 66 |
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nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
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markdown-it-py==4.0.0
|
| 68 |
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urllib3==2.6.3
|
| 69 |
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h11==0.16.0
|
| 70 |
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nvidia-nvshmem-cu12==3.3.20
|
| 71 |
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pyparsing==3.3.2
|
| 72 |
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annotated-doc==0.0.4
|
| 73 |
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hf-xet==1.4.3
|
| 74 |
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cuda-pathfinder==1.5.6
|
| 75 |
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platformdirs==4.9.6
|
| 76 |
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MedPy==0.5.2
|
| 77 |
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einops==0.8.2
|
| 78 |
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wheel==0.47.0
|
| 79 |
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tqdm==4.67.3
|
| 80 |
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h5py==3.16.0
|
| 81 |
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protobuf==6.33.6
|
| 82 |
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nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
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fsspec==2026.4.0
|
| 84 |
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ttkbootstrap==1.20.2
|
| 85 |
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nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
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mpmath==1.3.0
|
| 87 |
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rich==15.0.0
|
| 88 |
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pillow==12.2.0
|
| 89 |
+
cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
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joblib==1.5.3
|
| 93 |
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pydantic==2.13.3
|
| 94 |
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nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
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openpyxl==3.1.5
|
| 96 |
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huggingface_hub==1.13.0
|
| 97 |
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torchvision==0.24.1
|
| 98 |
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sentry-sdk==2.58.0
|
| 99 |
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cuda-core==1.0.1
|
| 100 |
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apache-tvm-ffi==0.1.9
|
| 101 |
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wandb==0.26.1
|
| 102 |
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fonttools==4.62.1
|
| 103 |
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Pygments==2.20.0
|
| 104 |
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triton==3.5.1
|
| 105 |
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setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
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scikit-learn==1.8.0
|
| 110 |
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scipy==1.17.1
|
| 111 |
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pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
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mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
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pluggy==1.6.0
|
| 119 |
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ruff==0.15.12
|
| 120 |
+
librt==0.9.0
|
| 121 |
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pathspec==1.1.1
|
| 122 |
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pytest==9.0.3
|
| 123 |
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mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,92 @@
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
| 3 |
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"python": "CPython 3.12.13",
|
| 4 |
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"startedAt": "2026-07-19T11:55:56.448788Z",
|
| 5 |
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"args": [
|
| 6 |
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"train",
|
| 7 |
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"--config",
|
| 8 |
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"imfuse_23.yaml",
|
| 9 |
+
"--fold",
|
| 10 |
+
"1",
|
| 11 |
+
"--run-suffix",
|
| 12 |
+
"fold1",
|
| 13 |
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"--seed",
|
| 14 |
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"0",
|
| 15 |
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"--try-resume"
|
| 16 |
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],
|
| 17 |
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"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
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| 18 |
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| 19 |
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"codePathLocal": ".venv/bin/mimose",
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| 20 |
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| 21 |
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"remote": "https://github.com/AImageLab-zip/IM-Fuse.git",
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| 22 |
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"commit": "939910fa6af8dc33e599ae158677254c2e760bc3"
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| 23 |
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},
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| 24 |
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"root": "/work/phd_mimose/runs/imfuse23_fold1",
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| 25 |
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"host": "nico",
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| 26 |
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"executable": "/homes/ocarpentiero/MiMoSe/.venv/bin/python3",
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"disk": {
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"/": {
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{
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"uuid": "GPU-c108ad3c-2c05-8183-e371-3e18a53f61f4"
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],
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"cudaVersion": "13.2",
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"slurm": {
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"cluster_name": "aimagelab",
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| 52 |
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"conf": "/etc/slurm/slurm.conf",
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| 53 |
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"cpus_on_node": "8",
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| 54 |
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"cpus_per_task": "8",
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| 55 |
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"gpus_on_node": "1",
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"gtids": "0",
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| 57 |
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"job_account": "phd_mimose",
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| 58 |
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"job_cpus_per_node": "8",
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"job_dependency": "singleton",
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"job_end_time": "1784548532",
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"job_gpus": "0",
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"job_id": "67726",
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"job_name": "IM_FUSO23_FOLD_1",
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"job_nodelist": "nico",
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| 66 |
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"job_num_nodes": "1",
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| 67 |
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"job_partition": "boost_usr_prod",
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"job_qos": "normal",
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"job_start_time": "1784462132",
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"job_uid": "92375",
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"job_user": "ocarpentiero",
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| 72 |
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"nodeid": "0",
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"nodelist": "nico",
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| 78 |
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"nprocs": "1",
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| 79 |
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| 80 |
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"oom_kill_step": "0",
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| 81 |
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| 82 |
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"procid": "0",
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| 83 |
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"submit_dir": "/homes/ocarpentiero/MiMoSe",
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| 84 |
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"submit_host": "ailb-login-03",
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| 85 |
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"task_pid": "2602957",
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| 86 |
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"tasks_per_node": "1",
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"topology_addr": "nico",
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| 88 |
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"topology_addr_pattern": "node",
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| 89 |
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"tres_per_task": "cpu=8"
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| 90 |
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},
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| 91 |
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"writerId": "kflcz2rifu6lif4sm51ke705ojclw1ty"
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| 92 |
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}
|
imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/logs/debug-core.log
ADDED
|
@@ -0,0 +1,7 @@
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|
|
|
|
|
|
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|
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|
|
| 1 |
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{"time":"2026-07-19T13:55:57.650352094+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmpt_i4ep0k/port-2602962.txt","pid":2602962,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
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| 2 |
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{"time":"2026-07-19T13:55:57.651173501+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":2602962}
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| 3 |
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{"time":"2026-07-19T13:55:57.651149205+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-2602962-2603070-355275573/socket","Net":"unix"}}
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| 4 |
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{"time":"2026-07-19T13:55:57.828565188+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
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| 5 |
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{"time":"2026-07-19T13:55:58.053998055+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"ep44kzjy","id":"1(@)"}
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| 6 |
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{"time":"2026-07-19T13:55:58.442488199+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"ep44kzjy","id":"1(@)"}
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| 7 |
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{"time":"2026-07-19T13:56:04.538867973+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"is205c3k4a6u"}
|
imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/logs/debug-internal.log
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/logs/debug.log
ADDED
|
@@ -0,0 +1,20 @@
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|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2026-07-19 13:55:57,422 INFO MainThread:2602962 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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| 2 |
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2026-07-19 13:55:57,423 INFO MainThread:2602962 [wandb_setup.py:_flush():81] Configure stats pid to 2602962
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| 3 |
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2026-07-19 13:55:57,423 INFO MainThread:2602962 [wandb_setup.py:_flush():81] Loading settings from environment variables
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2026-07-19 13:55:57,424 INFO MainThread:2602962 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/logs/debug.log
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| 5 |
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2026-07-19 13:55:57,425 INFO MainThread:2602962 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/imfuse23_fold1/wandb/run-20260719_135556-ep44kzjy/logs/debug-internal.log
|
| 6 |
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2026-07-19 13:55:57,426 INFO MainThread:2602962 [wandb_init.py:init():850] calling init triggers
|
| 7 |
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2026-07-19 13:55:57,426 INFO MainThread:2602962 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
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config: {'input_dir': '/work/phd_mimose/imfuse-preprocessed', 'output_dir': '/work/phd_mimose/runs/imfuse23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMFuse', 'model_kwargs': {'interleaved_tokenization': True, 'mamba_skip': True, 'num_cls': 4}, 'optimizer_class': 'RAdam', 'optimizer': {'lr': 0.0004, 'weight_decay': 3e-05, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMFuseLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
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2026-07-19 13:55:57,426 INFO MainThread:2602962 [wandb_init.py:init():898] starting backend
|
| 10 |
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2026-07-19 13:55:57,828 INFO MainThread:2602962 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
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2026-07-19 13:55:58,443 INFO MainThread:2602962 [wandb_init.py:init():918] backend started and connected
|
| 12 |
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2026-07-19 13:55:58,447 INFO MainThread:2602962 [wandb_init.py:init():988] updated telemetry
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2026-07-19 13:55:58,499 INFO MainThread:2602962 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
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| 14 |
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2026-07-19 13:55:58,967 INFO MainThread:2602962 [wandb_init.py:init():1051] run resumed
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| 15 |
+
2026-07-19 13:55:58,972 INFO MainThread:2602962 [wandb_init.py:init():1056] starting run threads in backend
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| 16 |
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2026-07-19 13:55:59,529 INFO MainThread:2602962 [wandb_run.py:_console_start():2554] atexit reg
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| 17 |
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2026-07-19 13:55:59,529 INFO MainThread:2602962 [wandb_run.py:_redirect():2403] redirect: wrap_raw
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| 18 |
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2026-07-19 13:55:59,530 INFO MainThread:2602962 [wandb_run.py:_redirect():2472] Wrapping output streams.
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| 19 |
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2026-07-19 13:55:59,530 INFO MainThread:2602962 [wandb_run.py:_redirect():2495] Redirects installed.
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| 20 |
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2026-07-19 13:55:59,534 INFO MainThread:2602962 [wandb_init.py:init():1094] run started, returning control to user process
|
inoutfusion18_fold3/huggingface/inoutfusion18_fold3/config.json
ADDED
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{
|
| 2 |
+
"mimose_model_name": "InOutFusion",
|
| 3 |
+
"model_class": "InOutFusion",
|
| 4 |
+
"model_kwargs": {
|
| 5 |
+
"num_cls": 4
|
| 6 |
+
}
|
| 7 |
+
}
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inoutfusion18_fold3/wandb/debug-internal.log
ADDED
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inoutfusion18_fold3/wandb/debug.log
ADDED
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| 1 |
+
2026-07-12 12:04:05,159 INFO MainThread:1349011 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-12 12:04:05,159 INFO MainThread:1349011 [wandb_setup.py:_flush():81] Configure stats pid to 1349011
|
| 3 |
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2026-07-12 12:04:05,159 INFO MainThread:1349011 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
+
2026-07-12 12:04:05,161 INFO MainThread:1349011 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/logs/debug.log
|
| 5 |
+
2026-07-12 12:04:05,162 INFO MainThread:1349011 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/logs/debug-internal.log
|
| 6 |
+
2026-07-12 12:04:05,162 INFO MainThread:1349011 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-12 12:04:05,163 INFO MainThread:1349011 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/inoutfusion-preprocessed', 'output_dir': '/work/phd_mimose/runs/inoutfusion18_fold3', 'num_epochs': 200, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 3}, 'model_class': 'InOutFusion', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'AdamW', 'optimizer': {'lr': 0.0006, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'InOutFusionLoss', 'loss_kwargs': {'num_classes': None, 'eps': 0.001}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 200, 'power': 0.0}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-12 12:04:05,163 INFO MainThread:1349011 [wandb_init.py:init():898] starting backend
|
| 10 |
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2026-07-12 12:04:05,657 INFO MainThread:1349011 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
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2026-07-12 12:04:06,142 INFO MainThread:1349011 [wandb_init.py:init():918] backend started and connected
|
| 12 |
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2026-07-12 12:04:06,146 INFO MainThread:1349011 [wandb_init.py:init():988] updated telemetry
|
| 13 |
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2026-07-12 12:04:06,226 INFO MainThread:1349011 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-12 12:04:06,660 INFO MainThread:1349011 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-12 12:04:07,323 INFO MainThread:1349011 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
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2026-07-12 12:04:07,324 INFO MainThread:1349011 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
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2026-07-12 12:04:07,324 INFO MainThread:1349011 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-12 12:04:07,324 INFO MainThread:1349011 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-12 12:04:07,337 INFO MainThread:1349011 [wandb_init.py:init():1094] run started, returning control to user process
|
| 20 |
+
2026-07-12 18:41:13,885 INFO MainThread:1349011 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/foms6y4n
|
| 21 |
+
2026-07-12 18:41:13,887 INFO MainThread:1349011 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
|
| 22 |
+
2026-07-12 18:41:13,890 INFO MainThread:1349011 [wandb_run.py:_restore():2502] restore
|
| 23 |
+
2026-07-12 18:41:13,890 INFO MainThread:1349011 [wandb_run.py:_restore():2508] restore done
|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/files/config.yaml
ADDED
|
@@ -0,0 +1,202 @@
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|
|
| 1 |
+
_wandb:
|
| 2 |
+
value:
|
| 3 |
+
cli_version: 0.26.1
|
| 4 |
+
e:
|
| 5 |
+
i3rn4473z5bxbyc3yf222wsgm8wqmwr5:
|
| 6 |
+
args:
|
| 7 |
+
- train
|
| 8 |
+
- --config
|
| 9 |
+
- inoutfusion_18.yaml
|
| 10 |
+
- --fold
|
| 11 |
+
- "3"
|
| 12 |
+
- --run-suffix
|
| 13 |
+
- fold3
|
| 14 |
+
- --seed
|
| 15 |
+
- "0"
|
| 16 |
+
- --try-resume
|
| 17 |
+
codePath: .venv/bin/mimose
|
| 18 |
+
codePathLocal: .venv/bin/mimose
|
| 19 |
+
cpu_count: 72
|
| 20 |
+
cpu_count_logical: 144
|
| 21 |
+
cudaVersion: "13.2"
|
| 22 |
+
disk:
|
| 23 |
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/:
|
| 24 |
+
total: "105089261568"
|
| 25 |
+
used: "15881871360"
|
| 26 |
+
executable: /homes/ocarpentiero/MiMoSe/.venv/bin/python3
|
| 27 |
+
git:
|
| 28 |
+
commit: 43ec89a6f363550241088042ebbde671ba2d1210
|
| 29 |
+
remote: https://github.com/AImageLab-zip/IM-Fuse.git
|
| 30 |
+
gpu: NVIDIA RTX PRO 6000 Blackwell Server Edition
|
| 31 |
+
gpu_count: 1
|
| 32 |
+
gpu_nvidia:
|
| 33 |
+
- architecture: Blackwell
|
| 34 |
+
cudaCores: 24064
|
| 35 |
+
memoryTotal: "102641958912"
|
| 36 |
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name: NVIDIA RTX PRO 6000 Blackwell Server Edition
|
| 37 |
+
uuid: GPU-bbcccbe8-a019-0622-5900-0ee905900e96
|
| 38 |
+
host: giacomo
|
| 39 |
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memory:
|
| 40 |
+
total: "540631396352"
|
| 41 |
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os: Linux-5.15.0-181-generic-x86_64-with-glibc2.35
|
| 42 |
+
program: /homes/ocarpentiero/MiMoSe/.venv/bin/mimose
|
| 43 |
+
python: CPython 3.12.13
|
| 44 |
+
root: /work/phd_mimose/runs/inoutfusion18_fold3
|
| 45 |
+
slurm:
|
| 46 |
+
cluster_name: aimagelab
|
| 47 |
+
conf: /etc/slurm/slurm.conf
|
| 48 |
+
cpus_on_node: "8"
|
| 49 |
+
cpus_per_task: "8"
|
| 50 |
+
distribution: cyclic
|
| 51 |
+
gpus_on_node: "1"
|
| 52 |
+
gtids: "0"
|
| 53 |
+
job_account: phd_mimose
|
| 54 |
+
job_cpus_per_node: "8"
|
| 55 |
+
job_dependency: singleton
|
| 56 |
+
job_end_time: "1783937009"
|
| 57 |
+
job_gid: "502"
|
| 58 |
+
job_gpus: "0"
|
| 59 |
+
job_id: "64083"
|
| 60 |
+
job_name: INOUTFUSION18_FOLD_3
|
| 61 |
+
job_nodelist: giacomo
|
| 62 |
+
job_num_nodes: "1"
|
| 63 |
+
job_partition: boost_usr_prod
|
| 64 |
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job_qos: normal
|
| 65 |
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job_start_time: "1783850609"
|
| 66 |
+
job_uid: "92375"
|
| 67 |
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job_user: ocarpentiero
|
| 68 |
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jobid: "64083"
|
| 69 |
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launch_node_ipaddr: 155.185.48.224
|
| 70 |
+
localid: "0"
|
| 71 |
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mem_per_node: "102400"
|
| 72 |
+
nnodes: "1"
|
| 73 |
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nodeid: "0"
|
| 74 |
+
nodelist: giacomo
|
| 75 |
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nprocs: "1"
|
| 76 |
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ntasks: "1"
|
| 77 |
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oom_kill_step: "0"
|
| 78 |
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prio_process: "0"
|
| 79 |
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procid: "0"
|
| 80 |
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pty_port: "40787"
|
| 81 |
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pty_win_col: "102"
|
| 82 |
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pty_win_row: "15"
|
| 83 |
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srun_comm_host: 155.185.48.224
|
| 84 |
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srun_comm_port: "34401"
|
| 85 |
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step_gpus: "0"
|
| 86 |
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step_id: "0"
|
| 87 |
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step_launcher_port: "34401"
|
| 88 |
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step_nodelist: dracula
|
| 89 |
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step_num_nodes: "1"
|
| 90 |
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step_num_tasks: "1"
|
| 91 |
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step_tasks_per_node: "1"
|
| 92 |
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stepid: "0"
|
| 93 |
+
submit_dir: /homes/ocarpentiero/MiMoSe
|
| 94 |
+
submit_host: dracula
|
| 95 |
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task_pid: "1349005"
|
| 96 |
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tasks_per_node: "1"
|
| 97 |
+
topology_addr: giacomo
|
| 98 |
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topology_addr_pattern: node
|
| 99 |
+
tres_per_task: cpu=8
|
| 100 |
+
startedAt: "2026-07-12T10:04:04.777235Z"
|
| 101 |
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writerId: i3rn4473z5bxbyc3yf222wsgm8wqmwr5
|
| 102 |
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m: []
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python_version: 3.12.13
|
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t:
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"1":
|
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"2":
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"3":
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"4": 3.12.13
|
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"5": 0.26.1
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"6": 5.12.1
|
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"12": 0.26.1
|
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"13": linux-x86_64
|
| 126 |
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batch_size:
|
| 127 |
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value: 2
|
| 128 |
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compile:
|
| 129 |
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value: false
|
| 130 |
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custom_trainer_kwargs:
|
| 131 |
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value:
|
| 132 |
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debug: false
|
| 133 |
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fold: 3
|
| 134 |
+
iter_per_epoch: null
|
| 135 |
+
patch_size: 128
|
| 136 |
+
region_fusion_start_epoch: 0
|
| 137 |
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split_file: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 138 |
+
train_masking_mode: random
|
| 139 |
+
transform_kind: imfuse
|
| 140 |
+
val_masking_mode: validation
|
| 141 |
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dataset_type:
|
| 142 |
+
value: BRATS18
|
| 143 |
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debug:
|
| 144 |
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value: false
|
| 145 |
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fp16:
|
| 146 |
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value: false
|
| 147 |
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hf_repo:
|
| 148 |
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value: AImageLab-Zip/MiMoSe
|
| 149 |
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input_dir:
|
| 150 |
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value: /work/phd_mimose/inoutfusion-preprocessed
|
| 151 |
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iter_per_epoch:
|
| 152 |
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value: null
|
| 153 |
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loss_class:
|
| 154 |
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value: InOutFusionLoss
|
| 155 |
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loss_kwargs:
|
| 156 |
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value:
|
| 157 |
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eps: 0.001
|
| 158 |
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num_classes: null
|
| 159 |
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model_class:
|
| 160 |
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value: InOutFusion
|
| 161 |
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model_kwargs:
|
| 162 |
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value:
|
| 163 |
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num_cls: 4
|
| 164 |
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num_epochs:
|
| 165 |
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value: 200
|
| 166 |
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num_workers:
|
| 167 |
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value: 8
|
| 168 |
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optimizer:
|
| 169 |
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value:
|
| 170 |
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betas:
|
| 171 |
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- 0.9
|
| 172 |
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- 0.999
|
| 173 |
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eps: 1e-08
|
| 174 |
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lr: 0.0006
|
| 175 |
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momentum: null
|
| 176 |
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weight_decay: 0.0001
|
| 177 |
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optimizer_class:
|
| 178 |
+
value: AdamW
|
| 179 |
+
output_dir:
|
| 180 |
+
value: /work/phd_mimose/runs/inoutfusion18_fold3
|
| 181 |
+
patch_size:
|
| 182 |
+
value: 128
|
| 183 |
+
push_to_hf:
|
| 184 |
+
value: true
|
| 185 |
+
region_fusion_start_epoch:
|
| 186 |
+
value: 0
|
| 187 |
+
scheduler_class:
|
| 188 |
+
value: PolynomialLR
|
| 189 |
+
scheduler_kwargs:
|
| 190 |
+
value:
|
| 191 |
+
power: 0
|
| 192 |
+
total_iters: 200
|
| 193 |
+
seed:
|
| 194 |
+
value: 0
|
| 195 |
+
split_file:
|
| 196 |
+
value: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 197 |
+
train_masking_mode:
|
| 198 |
+
value: RANDOM
|
| 199 |
+
val_masking_mode:
|
| 200 |
+
value: VALIDATION
|
| 201 |
+
validation_every:
|
| 202 |
+
value: 10
|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/files/output.log
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Processing Files (1 / 1) : 100%|██████████| 40.6MB / 40.6MB, 9.67MB/s
|
| 2 |
+
New Data Upload : 100%|██████████| 40.6MB / 40.6MB, 9.67MB/s
|
| 3 |
+
..._weights_only.safetensors: 100%|██████████| 40.6MB / 40.6MB
|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
+
nvidia-nccl-cu12==2.27.5
|
| 6 |
+
regex==2026.6.28
|
| 7 |
+
ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
+
idna==3.13
|
| 11 |
+
annotated-types==0.7.0
|
| 12 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
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typing-inspection==0.4.2
|
| 16 |
+
ninja==1.13.0
|
| 17 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
+
MarkupSafe==3.0.3
|
| 48 |
+
timm==1.0.22
|
| 49 |
+
charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
+
threadpoolctl==3.6.0
|
| 53 |
+
anyio==4.13.0
|
| 54 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
+
mamba-ssm==2.3.2.post1
|
| 63 |
+
psutil==7.2.2
|
| 64 |
+
filelock==3.29.0
|
| 65 |
+
httpx==0.28.1
|
| 66 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
+
markdown-it-py==4.0.0
|
| 68 |
+
urllib3==2.6.3
|
| 69 |
+
h11==0.16.0
|
| 70 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 71 |
+
pyparsing==3.3.2
|
| 72 |
+
annotated-doc==0.0.4
|
| 73 |
+
hf-xet==1.4.3
|
| 74 |
+
cuda-pathfinder==1.5.6
|
| 75 |
+
platformdirs==4.9.6
|
| 76 |
+
MedPy==0.5.2
|
| 77 |
+
einops==0.8.2
|
| 78 |
+
wheel==0.47.0
|
| 79 |
+
tqdm==4.67.3
|
| 80 |
+
h5py==3.16.0
|
| 81 |
+
protobuf==6.33.6
|
| 82 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
+
fsspec==2026.4.0
|
| 84 |
+
ttkbootstrap==1.20.2
|
| 85 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
+
mpmath==1.3.0
|
| 87 |
+
rich==15.0.0
|
| 88 |
+
pillow==12.2.0
|
| 89 |
+
cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
+
joblib==1.5.3
|
| 93 |
+
pydantic==2.13.3
|
| 94 |
+
nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
+
openpyxl==3.1.5
|
| 96 |
+
huggingface_hub==1.13.0
|
| 97 |
+
torchvision==0.24.1
|
| 98 |
+
sentry-sdk==2.58.0
|
| 99 |
+
cuda-core==1.0.1
|
| 100 |
+
apache-tvm-ffi==0.1.9
|
| 101 |
+
wandb==0.26.1
|
| 102 |
+
fonttools==4.62.1
|
| 103 |
+
Pygments==2.20.0
|
| 104 |
+
triton==3.5.1
|
| 105 |
+
setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
+
scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
+
mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
+
pluggy==1.6.0
|
| 119 |
+
ruff==0.15.12
|
| 120 |
+
librt==0.9.0
|
| 121 |
+
pathspec==1.1.1
|
| 122 |
+
pytest==9.0.3
|
| 123 |
+
mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
| 3 |
+
"python": "CPython 3.12.13",
|
| 4 |
+
"startedAt": "2026-07-12T10:04:04.777235Z",
|
| 5 |
+
"args": [
|
| 6 |
+
"train",
|
| 7 |
+
"--config",
|
| 8 |
+
"inoutfusion_18.yaml",
|
| 9 |
+
"--fold",
|
| 10 |
+
"3",
|
| 11 |
+
"--run-suffix",
|
| 12 |
+
"fold3",
|
| 13 |
+
"--seed",
|
| 14 |
+
"0",
|
| 15 |
+
"--try-resume"
|
| 16 |
+
],
|
| 17 |
+
"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
|
| 18 |
+
"codePath": ".venv/bin/mimose",
|
| 19 |
+
"codePathLocal": ".venv/bin/mimose",
|
| 20 |
+
"git": {
|
| 21 |
+
"remote": "https://github.com/AImageLab-zip/IM-Fuse.git",
|
| 22 |
+
"commit": "43ec89a6f363550241088042ebbde671ba2d1210"
|
| 23 |
+
},
|
| 24 |
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"root": "/work/phd_mimose/runs/inoutfusion18_fold3",
|
| 25 |
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"host": "giacomo",
|
| 26 |
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"executable": "/homes/ocarpentiero/MiMoSe/.venv/bin/python3",
|
| 27 |
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"cpu_count": 72,
|
| 28 |
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"cpu_count_logical": 144,
|
| 29 |
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"gpu": "NVIDIA RTX PRO 6000 Blackwell Server Edition",
|
| 30 |
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"gpu_count": 1,
|
| 31 |
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"disk": {
|
| 32 |
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"/": {
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| 33 |
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"total": "105089261568",
|
| 34 |
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"used": "15881871360"
|
| 35 |
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}
|
| 36 |
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},
|
| 37 |
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"memory": {
|
| 38 |
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"total": "540631396352"
|
| 39 |
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},
|
| 40 |
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"gpu_nvidia": [
|
| 41 |
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{
|
| 42 |
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"name": "NVIDIA RTX PRO 6000 Blackwell Server Edition",
|
| 43 |
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"memoryTotal": "102641958912",
|
| 44 |
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"cudaCores": 24064,
|
| 45 |
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"architecture": "Blackwell",
|
| 46 |
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"uuid": "GPU-bbcccbe8-a019-0622-5900-0ee905900e96"
|
| 47 |
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}
|
| 48 |
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],
|
| 49 |
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"cudaVersion": "13.2",
|
| 50 |
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"slurm": {
|
| 51 |
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"cluster_name": "aimagelab",
|
| 52 |
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"conf": "/etc/slurm/slurm.conf",
|
| 53 |
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"cpus_on_node": "8",
|
| 54 |
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"cpus_per_task": "8",
|
| 55 |
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"distribution": "cyclic",
|
| 56 |
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"gpus_on_node": "1",
|
| 57 |
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"gtids": "0",
|
| 58 |
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"job_account": "phd_mimose",
|
| 59 |
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"job_cpus_per_node": "8",
|
| 60 |
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"job_dependency": "singleton",
|
| 61 |
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"job_end_time": "1783937009",
|
| 62 |
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"job_gid": "502",
|
| 63 |
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"job_gpus": "0",
|
| 64 |
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"job_id": "64083",
|
| 65 |
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"job_name": "INOUTFUSION18_FOLD_3",
|
| 66 |
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"job_nodelist": "giacomo",
|
| 67 |
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"job_num_nodes": "1",
|
| 68 |
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"job_partition": "boost_usr_prod",
|
| 69 |
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"job_qos": "normal",
|
| 70 |
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"job_start_time": "1783850609",
|
| 71 |
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"job_uid": "92375",
|
| 72 |
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"job_user": "ocarpentiero",
|
| 73 |
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"jobid": "64083",
|
| 74 |
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"launch_node_ipaddr": "155.185.48.224",
|
| 75 |
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"localid": "0",
|
| 76 |
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"mem_per_node": "102400",
|
| 77 |
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"nnodes": "1",
|
| 78 |
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"nodeid": "0",
|
| 79 |
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"nodelist": "giacomo",
|
| 80 |
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"nprocs": "1",
|
| 81 |
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"ntasks": "1",
|
| 82 |
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"oom_kill_step": "0",
|
| 83 |
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"prio_process": "0",
|
| 84 |
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"procid": "0",
|
| 85 |
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"pty_port": "40787",
|
| 86 |
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"pty_win_col": "102",
|
| 87 |
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"pty_win_row": "15",
|
| 88 |
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"srun_comm_host": "155.185.48.224",
|
| 89 |
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"srun_comm_port": "34401",
|
| 90 |
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"step_gpus": "0",
|
| 91 |
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"step_id": "0",
|
| 92 |
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"step_launcher_port": "34401",
|
| 93 |
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"step_nodelist": "dracula",
|
| 94 |
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"step_num_nodes": "1",
|
| 95 |
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"step_num_tasks": "1",
|
| 96 |
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"step_tasks_per_node": "1",
|
| 97 |
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"stepid": "0",
|
| 98 |
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"submit_dir": "/homes/ocarpentiero/MiMoSe",
|
| 99 |
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"submit_host": "dracula",
|
| 100 |
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"task_pid": "1349005",
|
| 101 |
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"tasks_per_node": "1",
|
| 102 |
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"topology_addr": "giacomo",
|
| 103 |
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"topology_addr_pattern": "node",
|
| 104 |
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"tres_per_task": "cpu=8"
|
| 105 |
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},
|
| 106 |
+
"writerId": "i3rn4473z5bxbyc3yf222wsgm8wqmwr5"
|
| 107 |
+
}
|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/files/wandb-summary.json
ADDED
|
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| 1 |
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|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/logs/debug-core.log
ADDED
|
@@ -0,0 +1,19 @@
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{"time":"2026-07-12T12:04:05.492265978+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":1349011}
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| 11 |
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| 16 |
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| 17 |
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{"time":"2026-07-12T18:41:15.446929475+02:00","level":"INFO","msg":"connection: closed successfully","id":"1(@)"}
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| 18 |
+
{"time":"2026-07-12T18:41:15.446935605+02:00","level":"INFO","msg":"connection: ManageConnectionData: connection closed","id":"1(@)"}
|
| 19 |
+
{"time":"2026-07-12T18:41:15.446946093+02:00","level":"INFO","msg":"server is closed"}
|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/logs/debug-internal.log
ADDED
|
The diff for this file is too large to render.
See raw diff
|
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|
inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/logs/debug.log
ADDED
|
@@ -0,0 +1,23 @@
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| 1 |
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2026-07-12 12:04:05,159 INFO MainThread:1349011 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-12 12:04:05,159 INFO MainThread:1349011 [wandb_setup.py:_flush():81] Configure stats pid to 1349011
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2026-07-12 12:04:05,159 INFO MainThread:1349011 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
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2026-07-12 12:04:05,161 INFO MainThread:1349011 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/logs/debug.log
|
| 5 |
+
2026-07-12 12:04:05,162 INFO MainThread:1349011 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/inoutfusion18_fold3/wandb/run-20260712_120404-foms6y4n/logs/debug-internal.log
|
| 6 |
+
2026-07-12 12:04:05,162 INFO MainThread:1349011 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-12 12:04:05,163 INFO MainThread:1349011 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/inoutfusion-preprocessed', 'output_dir': '/work/phd_mimose/runs/inoutfusion18_fold3', 'num_epochs': 200, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 3}, 'model_class': 'InOutFusion', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'AdamW', 'optimizer': {'lr': 0.0006, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'InOutFusionLoss', 'loss_kwargs': {'num_classes': None, 'eps': 0.001}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 200, 'power': 0.0}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
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2026-07-12 12:04:05,163 INFO MainThread:1349011 [wandb_init.py:init():898] starting backend
|
| 10 |
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2026-07-12 12:04:05,657 INFO MainThread:1349011 [wandb_init.py:init():913] sending inform_init request
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| 11 |
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2026-07-12 12:04:06,142 INFO MainThread:1349011 [wandb_init.py:init():918] backend started and connected
|
| 12 |
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2026-07-12 12:04:06,146 INFO MainThread:1349011 [wandb_init.py:init():988] updated telemetry
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2026-07-12 12:04:06,226 INFO MainThread:1349011 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
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2026-07-12 12:04:06,660 INFO MainThread:1349011 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
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2026-07-12 12:04:07,323 INFO MainThread:1349011 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
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2026-07-12 12:04:07,324 INFO MainThread:1349011 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
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2026-07-12 12:04:07,324 INFO MainThread:1349011 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
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2026-07-12 12:04:07,324 INFO MainThread:1349011 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-12 12:04:07,337 INFO MainThread:1349011 [wandb_init.py:init():1094] run started, returning control to user process
|
| 20 |
+
2026-07-12 18:41:13,885 INFO MainThread:1349011 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/foms6y4n
|
| 21 |
+
2026-07-12 18:41:13,887 INFO MainThread:1349011 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
|
| 22 |
+
2026-07-12 18:41:13,890 INFO MainThread:1349011 [wandb_run.py:_restore():2502] restore
|
| 23 |
+
2026-07-12 18:41:13,890 INFO MainThread:1349011 [wandb_run.py:_restore():2508] restore done
|
mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/files/config.yaml
ADDED
|
@@ -0,0 +1,208 @@
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|
| 1 |
+
_wandb:
|
| 2 |
+
value:
|
| 3 |
+
cli_version: 0.26.1
|
| 4 |
+
e:
|
| 5 |
+
0xtcpp28krazuzrigyejf6kxmv2dl9uh:
|
| 6 |
+
args:
|
| 7 |
+
- train
|
| 8 |
+
- --config
|
| 9 |
+
- mcpl_18.yaml
|
| 10 |
+
- --fold
|
| 11 |
+
- "1"
|
| 12 |
+
- --run-suffix
|
| 13 |
+
- fold1
|
| 14 |
+
- --seed
|
| 15 |
+
- "0"
|
| 16 |
+
- --try-resume
|
| 17 |
+
codePath: .venv/bin/mimose
|
| 18 |
+
codePathLocal: .venv/bin/mimose
|
| 19 |
+
cpu_count: 24
|
| 20 |
+
cpu_count_logical: 48
|
| 21 |
+
cudaVersion: "13.2"
|
| 22 |
+
disk:
|
| 23 |
+
/:
|
| 24 |
+
total: "214643507200"
|
| 25 |
+
used: "37793730560"
|
| 26 |
+
executable: /homes/ocarpentiero/MiMoSe/.venv/bin/python3
|
| 27 |
+
git:
|
| 28 |
+
commit: 7396fc914d67b4178770ca6c84d4e78146222b5c
|
| 29 |
+
remote: https://github.com/AImageLab-zip/IM-Fuse.git
|
| 30 |
+
gpu: NVIDIA L40S
|
| 31 |
+
gpu_count: 1
|
| 32 |
+
gpu_nvidia:
|
| 33 |
+
- architecture: Ada
|
| 34 |
+
cudaCores: 18176
|
| 35 |
+
memoryTotal: "48305799168"
|
| 36 |
+
name: NVIDIA L40S
|
| 37 |
+
uuid: GPU-952e4eca-738c-2c68-5afd-35b393cd041f
|
| 38 |
+
host: franco
|
| 39 |
+
memory:
|
| 40 |
+
total: "540712640512"
|
| 41 |
+
os: Linux-5.15.0-181-generic-x86_64-with-glibc2.35
|
| 42 |
+
program: /homes/ocarpentiero/MiMoSe/.venv/bin/mimose
|
| 43 |
+
python: CPython 3.12.13
|
| 44 |
+
root: /work/phd_mimose/runs/mcpl18_fold1
|
| 45 |
+
slurm:
|
| 46 |
+
cluster_name: aimagelab
|
| 47 |
+
conf: /etc/slurm/slurm.conf
|
| 48 |
+
cpus_on_node: "8"
|
| 49 |
+
cpus_per_task: "8"
|
| 50 |
+
distribution: cyclic
|
| 51 |
+
gpus_on_node: "1"
|
| 52 |
+
gtids: "0"
|
| 53 |
+
job_account: phd_mimose
|
| 54 |
+
job_cpus_per_node: "8"
|
| 55 |
+
job_dependency: singleton
|
| 56 |
+
job_end_time: "1784213212"
|
| 57 |
+
job_gid: "502"
|
| 58 |
+
job_gpus: "0"
|
| 59 |
+
job_id: "66691"
|
| 60 |
+
job_name: MCPL18_FOLD_1
|
| 61 |
+
job_nodelist: franco
|
| 62 |
+
job_num_nodes: "1"
|
| 63 |
+
job_partition: boost_usr_prod
|
| 64 |
+
job_qos: normal
|
| 65 |
+
job_start_time: "1784126812"
|
| 66 |
+
job_uid: "92375"
|
| 67 |
+
job_user: ocarpentiero
|
| 68 |
+
jobid: "66691"
|
| 69 |
+
launch_node_ipaddr: 155.185.49.58
|
| 70 |
+
localid: "0"
|
| 71 |
+
mem_per_node: "102400"
|
| 72 |
+
nnodes: "1"
|
| 73 |
+
nodeid: "0"
|
| 74 |
+
nodelist: franco
|
| 75 |
+
nprocs: "1"
|
| 76 |
+
ntasks: "1"
|
| 77 |
+
oom_kill_step: "0"
|
| 78 |
+
prio_process: "0"
|
| 79 |
+
procid: "0"
|
| 80 |
+
pty_port: "35313"
|
| 81 |
+
pty_win_col: "157"
|
| 82 |
+
pty_win_row: "15"
|
| 83 |
+
srun_comm_host: 155.185.49.58
|
| 84 |
+
srun_comm_port: "46305"
|
| 85 |
+
step_gpus: "1"
|
| 86 |
+
step_id: "0"
|
| 87 |
+
step_launcher_port: "46305"
|
| 88 |
+
step_nodelist: giacomo
|
| 89 |
+
step_num_nodes: "1"
|
| 90 |
+
step_num_tasks: "1"
|
| 91 |
+
step_tasks_per_node: "1"
|
| 92 |
+
stepid: "0"
|
| 93 |
+
submit_dir: /homes/ocarpentiero/MiMoSe
|
| 94 |
+
submit_host: giacomo
|
| 95 |
+
task_pid: "1289974"
|
| 96 |
+
tasks_per_node: "1"
|
| 97 |
+
topology_addr: franco
|
| 98 |
+
topology_addr_pattern: node
|
| 99 |
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tres_per_task: cpu=8
|
| 100 |
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startedAt: "2026-07-15T14:47:18.354488Z"
|
| 101 |
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writerId: 0xtcpp28krazuzrigyejf6kxmv2dl9uh
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| 127 |
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|
| 129 |
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|
| 130 |
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custom_trainer_kwargs:
|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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fold: 1
|
| 138 |
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iter_per_epoch: null
|
| 139 |
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limage_lr: 0.005
|
| 140 |
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modal_contrast_weight: 0.01
|
| 141 |
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patch_size: 128
|
| 142 |
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pretrain_fraction: 0.5454545454545454
|
| 143 |
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split_file: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 144 |
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train_masking_mode: random
|
| 145 |
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transform_kind: imfuse
|
| 146 |
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val_masking_mode: validation
|
| 147 |
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dataset_type:
|
| 148 |
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value: BRATS18
|
| 149 |
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debug:
|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
+
value: AImageLab-Zip/MiMoSe
|
| 155 |
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input_dir:
|
| 156 |
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value: /work/phd_mimose/mcpl-preprocessed
|
| 157 |
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iter_per_epoch:
|
| 158 |
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value: null
|
| 159 |
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loss_class:
|
| 160 |
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value: MCPLLoss
|
| 161 |
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loss_kwargs:
|
| 162 |
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value:
|
| 163 |
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log_clamp_min: 0.005
|
| 164 |
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num_classes: null
|
| 165 |
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model_class:
|
| 166 |
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value: MCPL
|
| 167 |
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model_kwargs:
|
| 168 |
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value:
|
| 169 |
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cc_modalities: 4
|
| 170 |
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layers: 6
|
| 171 |
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num_cls: 4
|
| 172 |
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num_epochs:
|
| 173 |
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value: 1100
|
| 174 |
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num_workers:
|
| 175 |
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value: 8
|
| 176 |
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optimizer:
|
| 177 |
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value:
|
| 178 |
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betas:
|
| 179 |
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|
| 180 |
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|
| 181 |
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eps: 1e-08
|
| 182 |
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lr: 0.0012
|
| 183 |
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momentum: null
|
| 184 |
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weight_decay: 0.0001
|
| 185 |
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optimizer_class:
|
| 186 |
+
value: Adam
|
| 187 |
+
output_dir:
|
| 188 |
+
value: /work/phd_mimose/runs/mcpl18_fold1
|
| 189 |
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patch_size:
|
| 190 |
+
value: 128
|
| 191 |
+
push_to_hf:
|
| 192 |
+
value: true
|
| 193 |
+
scheduler_class:
|
| 194 |
+
value: CosineAnnealingLR
|
| 195 |
+
scheduler_kwargs:
|
| 196 |
+
value:
|
| 197 |
+
T_max: 600
|
| 198 |
+
eta_min: 0
|
| 199 |
+
seed:
|
| 200 |
+
value: 0
|
| 201 |
+
split_file:
|
| 202 |
+
value: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 203 |
+
train_masking_mode:
|
| 204 |
+
value: RANDOM
|
| 205 |
+
val_masking_mode:
|
| 206 |
+
value: VALIDATION
|
| 207 |
+
validation_every:
|
| 208 |
+
value: 10
|
mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/files/wandb-summary.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
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|
mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/logs/debug-internal.log
ADDED
|
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|
|
|
rfl18_fold3/huggingface/rfl18_fold3/config.json
ADDED
|
@@ -0,0 +1,7 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"mimose_model_name": "RFL",
|
| 3 |
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"model_class": "RFL",
|
| 4 |
+
"model_kwargs": {
|
| 5 |
+
"num_cls": 4
|
| 6 |
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|
| 7 |
+
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|
rfl18_fold3/wandb/debug-internal.log
ADDED
|
The diff for this file is too large to render.
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|
|
|
rfl18_fold3/wandb/debug.log
ADDED
|
@@ -0,0 +1,24 @@
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2026-07-13 18:17:59,672 INFO MainThread:3481391 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-13 18:17:59,673 INFO MainThread:3481391 [wandb_setup.py:_flush():81] Configure stats pid to 3481391
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2026-07-13 18:17:59,673 INFO MainThread:3481391 [wandb_setup.py:_flush():81] Loading settings from environment variables
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2026-07-13 18:17:59,673 INFO MainThread:3481391 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/rfl18_fold3/wandb/run-20260713_181759-v0x7hsty/logs/debug.log
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| 5 |
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2026-07-13 18:17:59,674 INFO MainThread:3481391 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/rfl18_fold3/wandb/run-20260713_181759-v0x7hsty/logs/debug-internal.log
|
| 6 |
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2026-07-13 18:17:59,674 INFO MainThread:3481391 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-13 18:17:59,674 INFO MainThread:3481391 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/rfl-preprocessed', 'output_dir': '/work/phd_mimose/runs/rfl18_fold3', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 4, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 3}, 'model_class': 'RFL', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0004, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'RFLLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'forward_weight': 1.0, 'rfl_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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| 9 |
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2026-07-13 18:17:59,674 INFO MainThread:3481391 [wandb_init.py:init():898] starting backend
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2026-07-13 18:18:00,006 INFO MainThread:3481391 [wandb_init.py:init():913] sending inform_init request
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2026-07-13 18:18:00,370 INFO MainThread:3481391 [wandb_init.py:init():918] backend started and connected
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2026-07-13 18:18:01,317 INFO MainThread:3481391 [wandb_init.py:init():1094] run started, returning control to user process
|
| 21 |
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2026-07-14 09:48:12,668 INFO MainThread:3481391 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/v0x7hsty
|
| 22 |
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2026-07-14 09:48:12,670 INFO MainThread:3481391 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
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|
| 24 |
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2026-07-14 09:48:12,673 INFO MainThread:3481391 [wandb_run.py:_restore():2508] restore done
|
rfl18_fold3/wandb/run-20260712_153957-v0x7hsty/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
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|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
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nvidia-nccl-cu12==2.27.5
|
| 6 |
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regex==2026.6.28
|
| 7 |
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ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
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idna==3.13
|
| 11 |
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annotated-types==0.7.0
|
| 12 |
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nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
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typing-inspection==0.4.2
|
| 16 |
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ninja==1.13.0
|
| 17 |
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nvidia-cufile-cu12==1.13.1.3
|
| 18 |
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nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
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torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
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pydantic_core==2.46.3
|
| 32 |
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nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
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nvidia-cusparselt-cu12==0.7.1
|
| 37 |
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nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
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nvidia-nvtx-cu12==12.8.90
|
| 40 |
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nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
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nvidia-cufft-cu12==11.3.3.83
|
| 42 |
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httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
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nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
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MarkupSafe==3.0.3
|
| 48 |
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timm==1.0.22
|
| 49 |
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charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
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threadpoolctl==3.6.0
|
| 53 |
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anyio==4.13.0
|
| 54 |
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nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
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nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
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nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
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mamba-ssm==2.3.2.post1
|
| 63 |
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psutil==7.2.2
|
| 64 |
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filelock==3.29.0
|
| 65 |
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httpx==0.28.1
|
| 66 |
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nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
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markdown-it-py==4.0.0
|
| 68 |
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urllib3==2.6.3
|
| 69 |
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h11==0.16.0
|
| 70 |
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nvidia-nvshmem-cu12==3.3.20
|
| 71 |
+
pyparsing==3.3.2
|
| 72 |
+
annotated-doc==0.0.4
|
| 73 |
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hf-xet==1.4.3
|
| 74 |
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cuda-pathfinder==1.5.6
|
| 75 |
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platformdirs==4.9.6
|
| 76 |
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MedPy==0.5.2
|
| 77 |
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einops==0.8.2
|
| 78 |
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wheel==0.47.0
|
| 79 |
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tqdm==4.67.3
|
| 80 |
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h5py==3.16.0
|
| 81 |
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protobuf==6.33.6
|
| 82 |
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nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
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fsspec==2026.4.0
|
| 84 |
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ttkbootstrap==1.20.2
|
| 85 |
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nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
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mpmath==1.3.0
|
| 87 |
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rich==15.0.0
|
| 88 |
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pillow==12.2.0
|
| 89 |
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cuda-bindings==13.3.1
|
| 90 |
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quack-kernels==0.6.0
|
| 91 |
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prompt_toolkit==3.0.52
|
| 92 |
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joblib==1.5.3
|
| 93 |
+
pydantic==2.13.3
|
| 94 |
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nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
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openpyxl==3.1.5
|
| 96 |
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huggingface_hub==1.13.0
|
| 97 |
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torchvision==0.24.1
|
| 98 |
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sentry-sdk==2.58.0
|
| 99 |
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cuda-core==1.0.1
|
| 100 |
+
apache-tvm-ffi==0.1.9
|
| 101 |
+
wandb==0.26.1
|
| 102 |
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fonttools==4.62.1
|
| 103 |
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Pygments==2.20.0
|
| 104 |
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triton==3.5.1
|
| 105 |
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setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
+
scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
+
mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
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pluggy==1.6.0
|
| 119 |
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ruff==0.15.12
|
| 120 |
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librt==0.9.0
|
| 121 |
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pathspec==1.1.1
|
| 122 |
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pytest==9.0.3
|
| 123 |
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mypy==1.20.2
|
| 124 |
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MiMoSe==0.0.2
|
rfl18_fold3/wandb/run-20260712_153957-v0x7hsty/files/wandb-metadata.json
ADDED
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|
| 1 |
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{
|
| 2 |
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"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
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|
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"startedAt": "2026-07-12T15:39:57.856068Z",
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"train",
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"--config",
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| 8 |
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|
| 9 |
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"--fold",
|
| 10 |
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"3",
|
| 11 |
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"--run-suffix",
|
| 12 |
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"fold3",
|
| 13 |
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"--seed",
|
| 14 |
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| 15 |
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|
| 16 |
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],
|
| 17 |
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"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
|
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rfl18_fold3/wandb/run-20260712_153957-v0x7hsty/logs/debug-core.log
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rfl18_fold3/wandb/run-20260712_153957-v0x7hsty/logs/debug-internal.log
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See raw diff
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rfl18_fold3/wandb/run-20260712_153957-v0x7hsty/logs/debug.log
ADDED
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2026-07-12 15:39:57,986 INFO MainThread:2893133 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-12 15:39:57,987 INFO MainThread:2893133 [wandb_init.py:init():850] calling init triggers
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2026-07-12 15:39:57,987 INFO MainThread:2893133 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
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| 8 |
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config: {'input_dir': '/work/phd_mimose/rfl-preprocessed', 'output_dir': '/work/phd_mimose/runs/rfl18_fold3', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 4, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 3}, 'model_class': 'RFL', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0004, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'RFLLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'forward_weight': 1.0, 'rfl_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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rfl18_fold3/wandb/run-20260713_181759-v0x7hsty/files/config.yaml
ADDED
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@@ -0,0 +1,211 @@
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
_wandb:
|
| 2 |
+
value:
|
| 3 |
+
cli_version: 0.26.1
|
| 4 |
+
e:
|
| 5 |
+
8v14wko7xnr55rg5kkbl8yxsez5pizzr:
|
| 6 |
+
args:
|
| 7 |
+
- train
|
| 8 |
+
- --config
|
| 9 |
+
- rfl_18.yaml
|
| 10 |
+
- --fold
|
| 11 |
+
- "3"
|
| 12 |
+
- --run-suffix
|
| 13 |
+
- fold3
|
| 14 |
+
- --seed
|
| 15 |
+
- "0"
|
| 16 |
+
- --try-resume
|
| 17 |
+
codePath: .venv/bin/mimose
|
| 18 |
+
codePathLocal: .venv/bin/mimose
|
| 19 |
+
cpu_count: 40
|
| 20 |
+
cpu_count_logical: 80
|
| 21 |
+
cudaVersion: "13.2"
|
| 22 |
+
disk:
|
| 23 |
+
/:
|
| 24 |
+
total: "105089261568"
|
| 25 |
+
used: "20368654336"
|
| 26 |
+
executable: /homes/ocarpentiero/MiMoSe/.venv/bin/python3
|
| 27 |
+
git:
|
| 28 |
+
commit: 43ec89a6f363550241088042ebbde671ba2d1210
|
| 29 |
+
remote: https://github.com/AImageLab-zip/IM-Fuse.git
|
| 30 |
+
gpu: NVIDIA L40S
|
| 31 |
+
gpu_count: 1
|
| 32 |
+
gpu_nvidia:
|
| 33 |
+
- architecture: Ada
|
| 34 |
+
cudaCores: 18176
|
| 35 |
+
memoryTotal: "48305799168"
|
| 36 |
+
name: NVIDIA L40S
|
| 37 |
+
uuid: GPU-64fdd4a0-d875-d3ce-b221-d0f8c2416f20
|
| 38 |
+
host: bimbogigi
|
| 39 |
+
memory:
|
| 40 |
+
total: "540709269504"
|
| 41 |
+
os: Linux-5.15.0-181-generic-x86_64-with-glibc2.35
|
| 42 |
+
program: /homes/ocarpentiero/MiMoSe/.venv/bin/mimose
|
| 43 |
+
python: CPython 3.12.13
|
| 44 |
+
root: /work/phd_mimose/runs/rfl18_fold3
|
| 45 |
+
slurm:
|
| 46 |
+
cluster_name: aimagelab
|
| 47 |
+
conf: /etc/slurm/slurm.conf
|
| 48 |
+
cpus_on_node: "8"
|
| 49 |
+
cpus_per_task: "8"
|
| 50 |
+
distribution: cyclic
|
| 51 |
+
gpus_on_node: "1"
|
| 52 |
+
gtids: "0"
|
| 53 |
+
job_account: phd_mimose
|
| 54 |
+
job_cpus_per_node: "8"
|
| 55 |
+
job_dependency: singleton
|
| 56 |
+
job_end_time: "1784053050"
|
| 57 |
+
job_gid: "502"
|
| 58 |
+
job_gpus: "3"
|
| 59 |
+
job_id: "64128"
|
| 60 |
+
job_name: RFL18_FOLD_3
|
| 61 |
+
job_nodelist: bimbogigi
|
| 62 |
+
job_num_nodes: "1"
|
| 63 |
+
job_partition: boost_usr_prod
|
| 64 |
+
job_qos: normal
|
| 65 |
+
job_start_time: "1783966650"
|
| 66 |
+
job_uid: "92375"
|
| 67 |
+
job_user: ocarpentiero
|
| 68 |
+
jobid: "64128"
|
| 69 |
+
launch_node_ipaddr: 155.185.48.224
|
| 70 |
+
localid: "0"
|
| 71 |
+
mem_per_node: "102400"
|
| 72 |
+
nnodes: "1"
|
| 73 |
+
nodeid: "0"
|
| 74 |
+
nodelist: bimbogigi
|
| 75 |
+
nprocs: "1"
|
| 76 |
+
ntasks: "1"
|
| 77 |
+
oom_kill_step: "0"
|
| 78 |
+
prio_process: "0"
|
| 79 |
+
procid: "0"
|
| 80 |
+
pty_port: "40787"
|
| 81 |
+
pty_win_col: "102"
|
| 82 |
+
pty_win_row: "15"
|
| 83 |
+
srun_comm_host: 155.185.48.224
|
| 84 |
+
srun_comm_port: "34401"
|
| 85 |
+
step_gpus: "0"
|
| 86 |
+
step_id: "0"
|
| 87 |
+
step_launcher_port: "34401"
|
| 88 |
+
step_nodelist: dracula
|
| 89 |
+
step_num_nodes: "1"
|
| 90 |
+
step_num_tasks: "1"
|
| 91 |
+
step_tasks_per_node: "1"
|
| 92 |
+
stepid: "0"
|
| 93 |
+
submit_dir: /homes/ocarpentiero/MiMoSe
|
| 94 |
+
submit_host: dracula
|
| 95 |
+
task_pid: "3481388"
|
| 96 |
+
tasks_per_node: "1"
|
| 97 |
+
topology_addr: bimbogigi
|
| 98 |
+
topology_addr_pattern: node
|
| 99 |
+
tres_per_task: cpu=8
|
| 100 |
+
startedAt: "2026-07-13T18:17:59.520552Z"
|
| 101 |
+
writerId: 8v14wko7xnr55rg5kkbl8yxsez5pizzr
|
| 102 |
+
m: []
|
| 103 |
+
python_version: 3.12.13
|
| 104 |
+
t:
|
| 105 |
+
"1":
|
| 106 |
+
- 1
|
| 107 |
+
- 5
|
| 108 |
+
- 11
|
| 109 |
+
- 49
|
| 110 |
+
- 53
|
| 111 |
+
"2":
|
| 112 |
+
- 1
|
| 113 |
+
- 5
|
| 114 |
+
- 11
|
| 115 |
+
- 49
|
| 116 |
+
- 53
|
| 117 |
+
"3":
|
| 118 |
+
- 2
|
| 119 |
+
- 5
|
| 120 |
+
- 13
|
| 121 |
+
- 14
|
| 122 |
+
- 16
|
| 123 |
+
- 62
|
| 124 |
+
"4": 3.12.13
|
| 125 |
+
"5": 0.26.1
|
| 126 |
+
"6": 5.12.1
|
| 127 |
+
"12": 0.26.1
|
| 128 |
+
"13": linux-x86_64
|
| 129 |
+
batch_size:
|
| 130 |
+
value: 4
|
| 131 |
+
compile:
|
| 132 |
+
value: false
|
| 133 |
+
custom_trainer_kwargs:
|
| 134 |
+
value:
|
| 135 |
+
debug: false
|
| 136 |
+
fold: 3
|
| 137 |
+
iter_per_epoch: null
|
| 138 |
+
patch_size: 128
|
| 139 |
+
region_fusion_start_epoch: 0
|
| 140 |
+
split_file: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 141 |
+
train_masking_mode: random
|
| 142 |
+
transform_kind: imfuse
|
| 143 |
+
val_masking_mode: validation
|
| 144 |
+
dataset_type:
|
| 145 |
+
value: BRATS18
|
| 146 |
+
debug:
|
| 147 |
+
value: false
|
| 148 |
+
fp16:
|
| 149 |
+
value: true
|
| 150 |
+
hf_repo:
|
| 151 |
+
value: AImageLab-Zip/MiMoSe
|
| 152 |
+
input_dir:
|
| 153 |
+
value: /work/phd_mimose/rfl-preprocessed
|
| 154 |
+
iter_per_epoch:
|
| 155 |
+
value: null
|
| 156 |
+
loss_class:
|
| 157 |
+
value: RFLLoss
|
| 158 |
+
loss_kwargs:
|
| 159 |
+
value:
|
| 160 |
+
eps: 0.001
|
| 161 |
+
forward_weight: 1
|
| 162 |
+
fuse_weight: 1
|
| 163 |
+
log_clamp_min: 0.005
|
| 164 |
+
num_classes: null
|
| 165 |
+
prm_weight: 1
|
| 166 |
+
rfl_weight: 1
|
| 167 |
+
sep_weight: 1
|
| 168 |
+
model_class:
|
| 169 |
+
value: RFL
|
| 170 |
+
model_kwargs:
|
| 171 |
+
value:
|
| 172 |
+
num_cls: 4
|
| 173 |
+
num_epochs:
|
| 174 |
+
value: 1000
|
| 175 |
+
num_workers:
|
| 176 |
+
value: 8
|
| 177 |
+
optimizer:
|
| 178 |
+
value:
|
| 179 |
+
betas:
|
| 180 |
+
- 0.9
|
| 181 |
+
- 0.999
|
| 182 |
+
eps: 1e-08
|
| 183 |
+
lr: 0.0004
|
| 184 |
+
momentum: null
|
| 185 |
+
weight_decay: 0.0001
|
| 186 |
+
optimizer_class:
|
| 187 |
+
value: Adam
|
| 188 |
+
output_dir:
|
| 189 |
+
value: /work/phd_mimose/runs/rfl18_fold3
|
| 190 |
+
patch_size:
|
| 191 |
+
value: 128
|
| 192 |
+
push_to_hf:
|
| 193 |
+
value: true
|
| 194 |
+
region_fusion_start_epoch:
|
| 195 |
+
value: 0
|
| 196 |
+
scheduler_class:
|
| 197 |
+
value: PolynomialLR
|
| 198 |
+
scheduler_kwargs:
|
| 199 |
+
value:
|
| 200 |
+
power: 0.9
|
| 201 |
+
total_iters: 1000
|
| 202 |
+
seed:
|
| 203 |
+
value: 0
|
| 204 |
+
split_file:
|
| 205 |
+
value: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 206 |
+
train_masking_mode:
|
| 207 |
+
value: RANDOM
|
| 208 |
+
val_masking_mode:
|
| 209 |
+
value: VALIDATION
|
| 210 |
+
validation_every:
|
| 211 |
+
value: 10
|
rfl18_fold3/wandb/run-20260713_181759-v0x7hsty/files/output.log
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Processing Files (1 / 1) : 100%|██████████| 281MB / 281MB, 29.2MB/s
|
| 2 |
+
New Data Upload : 100%|██████████| 280MB / 280MB, 29.2MB/s
|
| 3 |
+
..._weights_only.safetensors: 100%|██████████| 281MB / 281MB
|
rfl18_fold3/wandb/run-20260713_181759-v0x7hsty/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
+
nvidia-nccl-cu12==2.27.5
|
| 6 |
+
regex==2026.6.28
|
| 7 |
+
ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
+
idna==3.13
|
| 11 |
+
annotated-types==0.7.0
|
| 12 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
+
typing-inspection==0.4.2
|
| 16 |
+
ninja==1.13.0
|
| 17 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
+
MarkupSafe==3.0.3
|
| 48 |
+
timm==1.0.22
|
| 49 |
+
charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
+
threadpoolctl==3.6.0
|
| 53 |
+
anyio==4.13.0
|
| 54 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
+
mamba-ssm==2.3.2.post1
|
| 63 |
+
psutil==7.2.2
|
| 64 |
+
filelock==3.29.0
|
| 65 |
+
httpx==0.28.1
|
| 66 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
+
markdown-it-py==4.0.0
|
| 68 |
+
urllib3==2.6.3
|
| 69 |
+
h11==0.16.0
|
| 70 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 71 |
+
pyparsing==3.3.2
|
| 72 |
+
annotated-doc==0.0.4
|
| 73 |
+
hf-xet==1.4.3
|
| 74 |
+
cuda-pathfinder==1.5.6
|
| 75 |
+
platformdirs==4.9.6
|
| 76 |
+
MedPy==0.5.2
|
| 77 |
+
einops==0.8.2
|
| 78 |
+
wheel==0.47.0
|
| 79 |
+
tqdm==4.67.3
|
| 80 |
+
h5py==3.16.0
|
| 81 |
+
protobuf==6.33.6
|
| 82 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
+
fsspec==2026.4.0
|
| 84 |
+
ttkbootstrap==1.20.2
|
| 85 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
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mpmath==1.3.0
|
| 87 |
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rich==15.0.0
|
| 88 |
+
pillow==12.2.0
|
| 89 |
+
cuda-bindings==13.3.1
|
| 90 |
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quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
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joblib==1.5.3
|
| 93 |
+
pydantic==2.13.3
|
| 94 |
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nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
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openpyxl==3.1.5
|
| 96 |
+
huggingface_hub==1.13.0
|
| 97 |
+
torchvision==0.24.1
|
| 98 |
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sentry-sdk==2.58.0
|
| 99 |
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cuda-core==1.0.1
|
| 100 |
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apache-tvm-ffi==0.1.9
|
| 101 |
+
wandb==0.26.1
|
| 102 |
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fonttools==4.62.1
|
| 103 |
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Pygments==2.20.0
|
| 104 |
+
triton==3.5.1
|
| 105 |
+
setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
+
scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
+
mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
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pluggy==1.6.0
|
| 119 |
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ruff==0.15.12
|
| 120 |
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librt==0.9.0
|
| 121 |
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pathspec==1.1.1
|
| 122 |
+
pytest==9.0.3
|
| 123 |
+
mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
rfl18_fold3/wandb/run-20260713_181759-v0x7hsty/files/wandb-metadata.json
ADDED
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|
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| 18 |
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2026-07-13 18:18:01,311 INFO MainThread:3481391 [wandb_run.py:_redirect():2472] Wrapping output streams.
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2026-07-13 18:18:01,311 INFO MainThread:3481391 [wandb_run.py:_redirect():2495] Redirects installed.
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2026-07-13 18:18:01,317 INFO MainThread:3481391 [wandb_init.py:init():1094] run started, returning control to user process
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2026-07-14 09:48:12,668 INFO MainThread:3481391 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/v0x7hsty
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rfnet18_fold3/huggingface/rfnet18_fold3/config.json
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{
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"mimose_model_name": "RFNet",
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"model_class": "RFNet",
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"model_kwargs": {
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"num_cls": 4
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rfnet18_fold3/wandb/debug.log
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2026-07-12 17:39:54,386 INFO MainThread:757268 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-12 17:39:54,386 INFO MainThread:757268 [wandb_setup.py:_flush():81] Configure stats pid to 757268
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2026-07-12 17:39:54,386 INFO MainThread:757268 [wandb_setup.py:_flush():81] Loading settings from environment variables
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2026-07-12 17:39:54,387 INFO MainThread:757268 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/rfnet18_fold3/wandb/run-20260712_173954-jvrkselb/logs/debug.log
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2026-07-12 17:39:54,387 INFO MainThread:757268 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/rfnet18_fold3/wandb/run-20260712_173954-jvrkselb/logs/debug-internal.log
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2026-07-12 17:39:54,387 INFO MainThread:757268 [wandb_init.py:init():850] calling init triggers
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2026-07-12 17:39:54,387 INFO MainThread:757268 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
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config: {'input_dir': '/work/phd_mimose/rfnet-preprocessed', 'output_dir': '/work/phd_mimose/runs/rfnet18_fold3', 'num_epochs': 300, 'validation_every': 10, 'batch_size': 6, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 20, 'patch_size': 80, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 3}, 'model_class': 'RFNet', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.006, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMFuseLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 300, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 20, 'patch_size': 80, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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2026-07-12 17:39:54,388 INFO MainThread:757268 [wandb_init.py:init():898] starting backend
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2026-07-12 17:39:54,808 INFO MainThread:757268 [wandb_init.py:init():913] sending inform_init request
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2026-07-12 17:39:55,331 INFO MainThread:757268 [wandb_init.py:init():918] backend started and connected
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2026-07-12 17:39:55,335 INFO MainThread:757268 [wandb_init.py:init():988] updated telemetry
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2026-07-12 17:39:55,369 INFO MainThread:757268 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
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2026-07-12 17:39:55,685 INFO MainThread:757268 [wandb_init.py:init():1056] starting run threads in backend
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2026-07-12 17:39:55,985 INFO MainThread:757268 [wandb_run.py:_console_start():2554] atexit reg
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2026-07-12 17:39:55,985 INFO MainThread:757268 [wandb_run.py:_redirect():2403] redirect: wrap_raw
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2026-07-12 17:39:55,985 INFO MainThread:757268 [wandb_run.py:_redirect():2472] Wrapping output streams.
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2026-07-12 17:39:55,985 INFO MainThread:757268 [wandb_run.py:_redirect():2495] Redirects installed.
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2026-07-12 17:39:55,991 INFO MainThread:757268 [wandb_init.py:init():1094] run started, returning control to user process
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2026-07-13 02:52:52,924 INFO MainThread:757268 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/jvrkselb
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2026-07-13 02:52:52,925 INFO MainThread:757268 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
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2026-07-13 02:52:52,928 INFO MainThread:757268 [wandb_run.py:_restore():2502] restore
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2026-07-13 02:52:52,928 INFO MainThread:757268 [wandb_run.py:_restore():2508] restore done
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