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def block_html(self, html): if self.options.get() and \ html.lower().startswith(): return if self.options.get(): return escape(html) return html
Rendering block level pure html content. :param html: text content of the html snippet.
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def run_single_with_display(wf, display): S = Scheduler(error_handler=display.error_handler) W = Queue() \ >> branch(log_job_start.to(sink_map(display))) \ >> worker \ >> branch(sink_map(display)) return S.run(W, get_workflow(wf))
Adds a display to the single runner. Everything still runs in a single thread. Every time a job is pulled by the worker, a message goes to the display routine; when the job is finished the result is sent to the display routine.
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def uncrop(data, crinfo, orig_shape, resize=False, outside_mode="constant", cval=0): if crinfo is None: crinfo = list(zip([0] * data.ndim, orig_shape)) elif np.asarray(crinfo).size == data.ndim: crinfo = list(zip(crinfo, np.asarray(crinfo) + data.shape)) crinfo = fix_crinfo(crinfo) ...
Put some boundary to input image. :param data: input data :param crinfo: array with minimum and maximum index along each axis [[minX, maxX],[minY, maxY],[minZ, maxZ]]. If crinfo is None, the whole input image is placed into [0, 0, 0]. If crinfo is just series of three numbers, it is used as an...
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def create_regular_expression(self, regexp): for parameter in self.situation_context.situation_parameters: if parameter.type == : return self.add_parameter_value( , **{: parameter.href, : regexp}) raise...
Create a regular expression for this inspection situation context. The inspection situation must be using an inspection context that supports regex. :param str regexp: regular expression string :raises CreateElementFailed: failed to modify the situation
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def getfqdn(name=): name = name.strip() if not name or name == : name = gethostname() try: hostname, aliases, ipaddrs = gethostbyaddr(name) except error: pass else: aliases.insert(0, hostname) for name in aliases: if in name: ...
Get fully qualified domain name from name. An empty argument is interpreted as meaning the local host. First the hostname returned by gethostbyaddr() is checked, then possibly existing aliases. In case no FQDN is available, hostname from gethostname() is returned.
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def object(self, o_type, o_name=None): o_found = self._get_object(o_type=o_type, o_name=o_name) if not o_found: return {: u, : u % o_type} return o_found
Get an object from the scheduler. The result is a serialized object which is a Json structure containing: - content: the serialized object content - __sys_python_module__: the python class of the returned object The Alignak unserialize function of the alignak.misc.serialization package...
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def add_mod(self, seq, mod): modstr = self.value(mod) if modstr == : seq.parser_tree = parsing.Complement(seq.parser_tree) elif modstr == : seq.parser_tree = parsing.LookAhead(seq.parser_tree) elif modstr == : seq.parser_tree = parsing.Neg(seq.parser_tree) elif modstr ==...
Create a tree.{Complement, LookAhead, Neg, Until}
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def _setup_metric_group_values(self): mg_defs = self._metrics_context.metric_group_definitions metric_group_name = None resource_uri = None dt_timestamp = None object_values = None metric_group_values = list() state = 0 for mr_line in self._met...
Return the list of MetricGroupValues objects for this metrics response, by processing its metrics response string. The lines in the metrics response string are:: MetricsResponse: MetricsGroup{0,*} <emptyline> a third empty line at the end Metr...
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def project_from_files( files, func_wrapper=_astroid_wrapper, project_name="no name", black_list=("CVS",) ): astroid_manager = manager.AstroidManager() project = Project(project_name) for something in files: if not os.path.exists(something): fpath = modutils.file_from_modpa...
return a Project from a list of files or modules
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def upload_file_handle( self, bucket: str, key: str, src_file_handle: typing.BinaryIO, content_type: str=None, metadata: dict=None): raise NotImplementedError()
Saves the contents of a file handle as the contents of an object in a bucket.
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def uninstall(self, package): if isinstance(package, tuple): package = .join(package) if not self.is_installed(package): self._write_to_log( % package) return try: self._execute_pip([, , package]) except subprocess.CalledProcessErr...
Uninstalls the given package (given in pip's package syntax or a tuple of ('name', 'ver')) from this virtual environment.
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def delete(args): m = TemplateManager(args.hosts) m.delete(args.name)
Delete a template by name
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def _scatter_obs( adata, x=None, y=None, color=None, use_raw=None, layers=, sort_order=True, alpha=None, basis=None, groups=None, components=None, projection=, legend_loc=, legend_fontsize=None, legen...
See docstring of scatter.
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def pkg_config_libdirs(packages): if token.startswith("-L"): libdirs.append(token[2:]) return libdirs
Returns a list of all library paths that pkg-config says should be included when linking against the list of packages given as 'packages'. An empty return list means that the package may be found in the standard system locations, irrespective of pkg-config.
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def children(self): for c in self.table.columns: if c.parent == self.name and not c.valuetype_class.is_label(): yield c
Return the table's other column that have this column as a parent, excluding labels
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def format_lines(statements, lines): pairs = [] i = 0 j = 0 start = None statements = sorted(statements) lines = sorted(lines) while i < len(statements) and j < len(lines): if statements[i] == lines[j]: if start == None: start = lines[j] e...
Nicely format a list of line numbers. Format a list of line numbers for printing by coalescing groups of lines as long as the lines represent consecutive statements. This will coalesce even if there are gaps between statements. For example, if `statements` is [1,2,3,4,5,10,11,12,13,14] and `lines...
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def stage_config(self): def get_stage_setting(stage, extended_stages=None): if extended_stages is None: extended_stages = [] if stage in extended_stages: raise RuntimeError(stage + " has already been extended to these settings. " ...
A shortcut property for settings of a stage.
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def _len_objid(self): try: return self._size except AttributeError: temp = (self.object_id, self.birth_vol_id, self.birth_object_id, self.birth_domain_id) self._size = sum([ObjectID._UUID_SIZE for data in temp if data is not None]) return self._size
Get the actual size of the content, as some attributes have variable sizes
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def _update_progress(self, percentage, **kwargs): if self._show_progressbar: if self._progressbar is None: self._initialize_progressbar() self._progressbar.update(percentage * 10000) if self._progress_callback is not None: self._progress_ca...
Update the progress with a percentage, including updating the progressbar as well as calling the progress callback. :param float percentage: Percentage of the progressbar. from 0.0 to 100.0. :param kwargs: Other parameters that will be passed to the progress_callback handler. ...
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def create_channel( self, name, values=None, *, shape=None, units=None, dtype=None, **kwargs ) -> Channel: if name in self.channel_names: warnings.warn(name, wt_exceptions.ObjectExistsWarning) return self[name] elif name in self.variable_names: ra...
Append a new channel. Parameters ---------- name : string Unique name for this channel. values : array (optional) Array. If None, an empty array equaling the data shape is created. Default is None. shape : tuple of int Shape to use...
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def choose(n, k): if 0 <= k <= n: ntok = 1 ktok = 1 for t in xrange(1, min(k, n - k) + 1): ntok *= n ktok *= t n -= 1 return ntok // ktok else: return 0
A fast way to calculate binomial coefficients by Andrew Dalke (contrib).
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def added_env_paths(env_vars, env=None): if not env_vars: return None if not env: env = dict(os.environ) result = dict(env) for env_var, paths in env_vars.items(): separator = paths[0] paths = paths[1:] current = env.get(env_var, "") current = [x fo...
:param dict|None env_vars: Env vars to customize :param dict env: Original env vars
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def connect_put_namespaced_service_proxy_with_path(self, name, namespace, path, **kwargs): kwargs[] = True if kwargs.get(): return self.connect_put_namespaced_service_proxy_with_path_with_http_info(name, namespace, path, **kwargs) else: (data) = self.connect_...
connect_put_namespaced_service_proxy_with_path # noqa: E501 connect PUT requests to proxy of Service # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.connect_put_namespaced_service_p...
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def role_exists(role, **kwargs): return len(tsql_query(query=.format(role), as_dict=True, **kwargs)) == 1
Checks if a role exists. CLI Example: .. code-block:: bash salt minion mssql.role_exists db_owner
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def list_authors(): authors = Author.query.all() content = for author in authors: content += % author.name return content
List all authors. e.g.: GET /authors
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def poisson_equation(image, gradient=1, max_iter=100, convergence=.01, percentile = 90.0): pe = np.zeros((image.shape[0]+2, image.shape[1]+2)) if image.shape[0] > 64 and image.shape[1] > 64: sub_image = image[::2, ::2] sub_pe = poisson_equation(sub_image, ...
Estimate the solution to the Poisson Equation The Poisson Equation is the solution to gradient(x) = h^2/4 and, in this context, we use a boundary condition where x is zero for background pixels. Also, we set h^2/4 = 1 to indicate that each pixel is a distance of 1 from its neighbors. The estimatio...
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def apply_parameters(self, parameters): class SafeString(object): def __init__(self, s): self.string = s def __repr__(self): return "{" + self.string + "}" def __str__(self): return "{" + self.string + "}" ...
Recursively apply dictionary entries in 'parameters' to {item}s in recipe structure, leaving undefined {item}s as they are. A special case is a {$REPLACE:item}, which replaces the string with a copy of the referenced parameter item. Examples: parameters = { 'x':'5' } ap...
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def _compute_sources_for_target(self, target): def resolve_target_sources(target_sources): resolved_sources = [] for tgt in target_sources: if tgt.has_sources(): resolved_sources.extend(tgt.sources_relative_to_buildroot()) return resolved_sources sources = [s for s in t...
Computes and returns the sources (relative to buildroot) for the given target.
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def from_string(string): lines = list(clean_lines(string.splitlines())) def input_mode(line): if line[0] == "&": return ("sections", line[1:].lower()) elif "ATOMIC_SPECIES" in line: return ("pseudo", ) elif "K_POINTS" in line:...
Reads an PWInput object from a string. Args: string (str): PWInput string Returns: PWInput object
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def _from_dict(cls, _dict): args = {} if in _dict: args[] = WorkspaceSystemSettingsTooling._from_dict( _dict.get()) if in _dict: args[ ] = WorkspaceSystemSettingsDisambiguation._from_dict( _dict.get()) ...
Initialize a WorkspaceSystemSettings object from a json dictionary.
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def update_settings(self, settings, force=False, timeout=-1): data = settings.copy() if in data: ethernet_default_values = self._get_default_values(self.SETTINGS_ETHERNET_DEFAULT_VALUES) data[] = merge_resources(data[], ...
Updates interconnect settings on the logical interconnect. Changes to interconnect settings are asynchronously applied to all managed interconnects. (This method is not available from API version 600 onwards) Args: settings: Interconnect settings force: If set to true, th...
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def get_html_string(self, **kwargs): options = self._get_options(kwargs) if options["format"]: string = self._get_formatted_html_string(options) else: string = self._get_simple_html_string(options) return string
Return string representation of HTML formatted version of table in current state. Arguments: start - index of first data row to include in output end - index of last data row to include in output PLUS ONE (list slice style) fields - names of fields (columns) to include header -...
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def partial(self, *args): def part(*args2): args3 = args + args2 return self.obj(*args3) return self._wrap(part)
Partially apply a function by creating a version that has had some of its arguments pre-filled, without changing its dynamic `this` context.
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def _CreateDatabase(self): goodlogging.Log.Info("DB", "Initialising new database", verbosity=self.logVerbosity) with sqlite3.connect(self._dbPath) as db: db.execute("CREATE TABLE Config (" "Name TEXT UNIQUE NOT NULL, " "Value TEXT)") db.execute("CREA...
Create all database tables.
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def __getCashToBuyStock(self): account=self.__strategy.getAccountCopy() if (account.getCash() >= account.getTotalValue() / self.buying_ratio): return account.getTotalValue() / self.buying_ratio else: return 0
calculate the amount of money to buy stock
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def write_main(self): main_section = main_header = self.write_main_header() main_section = main_section + main_header main_section = main_section + wf_declarations_to_write = self.write_main_wfdeclarations() main_section = main_section + wf...
Writes out a huge string representing the main section of the python compiled toil script. Currently looks at and writes 5 sections: 1. JSON Variables (includes importing and preparing files as tuples) 2. TSV Variables (includes importing and preparing files as tuples) 3. CSV Va...
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def inferRowCompat(self, distribution): if self.hack_ is None: self.clean_outcpd() return self.hack_.vecMaxProd(distribution)
Equivalent to the category inference of zeta1.TopLevel. Computes the max_prod (maximum component of a component-wise multiply) between the rows of the histogram and the incoming distribution. May be slow if the result of clean_outcpd() is not valid. :param distribution: Array of length equal to the num...
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def compile_vocab(docs, limit=1e6, verbose=0, tokenizer=Tokenizer(stem=None, lower=None, strip=None)): tokenizer = make_tokenizer(tokenizer) d = Dictionary() try: limit = min(limit, docs.count()) docs = docs.iterator() except (AttributeError, TypeError): pass for i, doc...
Get the set of words used anywhere in a sequence of documents and assign an integer id This vectorizer is much faster than the scikit-learn version (and only requires low/constant RAM ?). >>> gen = ('label: ' + chr(ord('A') + i % 3)*3 for i in range(11)) >>> d = compile_vocab(gen, verbose=0) >>> d ...
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def search_messages(session, thread_id, query, limit=20, offset=0, message_context_details=None, window_above=None, window_below=None): query = { : thread_id, : query, : limit, : offset } if message_context_details: query[]...
Search for messages
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def prepare_dispatches(): dispatches = [] target_messages = Message.get_without_dispatches() cache = {} for message_model in target_messages: if message_model.cls not in cache: message_cls = get_registered_message_type(message_model.cls) subscribers = message_cls....
Automatically creates dispatches for messages without them. :return: list of Dispatch :rtype: list
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def greaterThan(self, value): newq = self.copy() newq.setOp(Query.Op.GreaterThan) newq.setValue(value) return newq
Sets the operator type to Query.Op.GreaterThan and sets the value to the inputted value. :param value <variant> :return <Query> :sa __gt__ :usage |>>> from orb import Query as Q |>>> query = Q('te...
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def write_error(self, status_code, **kwargs): if "exc_info" in kwargs: exc_info = kwargs["exc_info"] error = exc_info[1] errormessage = "%s: %s" % (status_code, error) self.render("error.html", errormessage=errormessage) else: errormessage = "%s" % (status_code) self.re...
:param status_code: :param kwargs: :return:
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def macontrol(self, data: [, str] = None, ewmachart: str = None, machart: str = None, procopts: str = None, stmtpassthrough: str = None, **kwargs: dict) -> :
Python method to call the MACONTROL procedure Documentation link: https://go.documentation.sas.com/?cdcId=pgmsascdc&cdcVersion=9.4_3.4&docsetId=qcug&docsetTarget=qcug_macontrol_toc.htm&locale=en :param data: SASdata object or string. This parameter is required. :parm ewmachart: The ewm...
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def get_edit_token(self): if not self.edit_token or (time.time() - self.instantiation_time) > self.token_renew_period: self.generate_edit_credentials() self.instantiation_time = time.time() return self.edit_token
Can be called in order to retrieve the edit token from an instance of WDLogin :return: returns the edit token
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async def disconnect(self): self._is_shutdown = True self.ready.clear() self.update_state(NodeState.DISCONNECTING) await self.player_manager.disconnect() if self._ws is not None and self._ws.open: await self._ws.close() if self._listener_task is n...
Shuts down and disconnects the websocket.
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def lvscan(self): self.open() lv_list = [] lv_handles = lvm_vg_list_lvs(self.handle) if not bool(lv_handles): return lv_list lvh = dm_list_first(lv_handles) while lvh: c = cast(lvh, POINTER(lvm_lv_list)) lv = LogicalVolume(self...
Probes the volume group for logical volumes and returns a list of LogicalVolume instances:: from lvm2py import * lvm = LVM() vg = lvm.get_vg("myvg") lvs = vg.lvscan() *Raises:* * HandleError
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def save(self, filename=None, *, gzipped=None, byteorder=None): if gzipped is None: gzipped = self.gzipped if filename is None: filename = self.filename if filename is None: raise ValueError() open_file = gzip.open if gzipped else ...
Write the file at the specified location. The `gzipped` keyword only argument indicates if the file should be gzipped. The `byteorder` keyword only argument lets you specify whether the file should be big-endian or little-endian. If the method is called without any argument, it w...
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def server_exists(s_name, ip=None, s_state=None, **connection_args): *serverName server = _server_get(s_name, **connection_args) if server is None: return False if ip is not None and ip != server.get_ipaddress(): return False if s_state is not None and s_state.upper() != server.get_s...
Checks if a server exists CLI Example: .. code-block:: bash salt '*' netscaler.server_exists 'serverName'
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def _map_block_index_to_location(ir_blocks): block_index_to_location = {} current_block_ixs = [] for num, ir_block in enumerate(ir_blocks): if isinstance(ir_block, blocks.GlobalOperationsStart): if len(current_block_ixs) > 0: unassociated_blocks = [ir_...
Associate each IR block with its corresponding location, by index.
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def save_anim(self, fig, animate, init, bitrate=10000, fps=30): from matplotlib import animation anim = animation.FuncAnimation(fig, animate, init_func=init, frames=360, interval=20) FFMpegWriter = animation.writers[] writer = FFMpegWriter(bitrate= bitrate, fps=fps) ...
Not functional -- TODO
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def count(self): if self._total_count is None: self._total_count = self._get_total_count() return self._total_count
Approximate number of results, according to the API
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def fetch(self, start=False, full_data=True): if self.id is None: return self if full_data is True: fields = None elif isinstance(full_data, dict): fields = full_data else: fields = { "_id": 0, "pa...
Get the current job data and possibly flag it as started.
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def personal_sign(self, message, account, password=None): return (yield from self.rpc_call(, [message, account, password]))
https://github.com/ethereum/go-ethereum/wiki/Management-APIs#personal_sign :param message: Message for sign :type message: str :param account: Account address :type account: str :param password: Password of account (optional) :type password: str :return: signa...
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def _cut_to_pieces(self, bunch_stack): stack_len = len(bunch_stack[0]) for i in xrange(0, stack_len, self.fragment_length): yield np.array(map(lambda stack: stack[i: i + self.fragment_length], bunch_stack))
:type bunch_stack: list of list of int
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async def setup_hostname() -> str: machine_id = open().read().strip() hostname = machine_id[:6] with open(, ) as ehn: ehn.write(f) LOG.debug("Setting hostname") proc = await asyncio.create_subprocess_exec( , , , stdout=asyncio.subprocess.PIPE, stderr=asyn...
Intended to be run when the server starts. Sets the machine hostname. The machine hostname is set from the systemd-generated machine-id, which changes at every boot. Once the hostname is set, we restart avahi. This is a separate task from establishing and changing the opentrons machine name, whic...
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def sign(self, value): value = want_bytes(value) timestamp = base64_encode(int_to_bytes(self.get_timestamp())) sep = want_bytes(self.sep) value = value + sep + timestamp return value + sep + self.get_signature(value)
Signs the given string and also attaches a time information.
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def modification_time(self): timestamp = getattr( self._cpio_archive_file_entry, , None) if timestamp is None: return None return dfdatetime_posix_time.PosixTime(timestamp=timestamp)
dfdatetime.DateTimeValues: modification time or None if not available.
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def register_type(self, typename): typekey = typehash(typename) if typekey in self._type_register: raise ValueError("Type name collision. Type %s has the same hash." % repr(self._type_register[typekey])) self._type_register[typekey] = typename
Registers a type name so that it may be used to send and receive packages. :param typename: Name of the packet type. A method with the same name and a "on_" prefix should be added to handle incomming packets. :raises ValueError: If there is a hash code collision.
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def issue_instant_ok(self): upper = time_util.shift_time(time_util.time_in_a_while(days=1), self.timeslack).timetuple() lower = time_util.shift_time(time_util.time_a_while_ago(days=1), -self.timeslack).timetuple() ...
Check that the response was issued at a reasonable time
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def is_script(self, container): try: style = self._style(container) return style.get_value(, container) != TextPosition.NORMAL except StyleException: return False
Returns `True` if this styled text is super/subscript.
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def _parse_proxy(proxy): scheme, r_scheme = splittype(proxy) if not r_scheme.startswith("/"): scheme = None authority = proxy else: if not r_scheme.startswith("//"): raise ValueError("proxy URL with no authority: %r" % proxy) ...
Return (scheme, user, password, host/port) given a URL or an authority. If a URL is supplied, it must have an authority (host:port) component. According to RFC 3986, having an authority component means the URL must have two slashes after the scheme: >>> _parse_proxy('file:/ftp.example.com/') Trace...
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def wait_for_current_tasks(self): logger.info("Waiting for all remaining tasks to complete") for task_id in self.tasks: fut = self.tasks[task_id][] if not fut.done(): logger.debug("Waiting for task {} to complete".format(task_id...
Waits for all tasks in the task list to be completed, by waiting for their AppFuture to be completed. This method will not necessarily wait for any tasks added after cleanup has started (such as data stageout?)
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def symmetry_reduce(tensors, structure, tol=1e-8, **kwargs): sga = SpacegroupAnalyzer(structure, **kwargs) symmops = sga.get_symmetry_operations(cartesian=True) unique_mapping = TensorMapping([tensors[0]], [[]], tol=tol) for tensor in tensors[1:]: is_unique = True for unique_tensor,...
Function that converts a list of tensors corresponding to a structure and returns a dictionary consisting of unique tensor keys with symmop values corresponding to transformations that will result in derivative tensors from the original list Args: tensors (list of tensors): list of Tensor objec...
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def point_in_segment(ac, b): onin (a,c) = ac abc = [np.asarray(u) for u in (a,b,c)] if any(len(u.shape) > 1 for u in abc): (a,b,c) = [np.reshape(u,(len(u),-1)) for u in abc] else: (a,b,c) = abc vab = b - a vbc = c - b vac = c - a dab = np.sqrt(np.sum(...
point_in_segment((a,b), c) yields True if point x is in segment (a,b) and False otherwise. Note that this differs from point_on_segment in that a point that if c is equal to a or b it is considered 'on' but not 'in' the segment.
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def count_collisions(Collisions): CollisionCount = 0 CollisionIndicies = [] lastval = True for i, val in enumerate(Collisions): if val == True and lastval == False: CollisionIndicies.append(i) CollisionCount += 1 lastval = val return CollisionCount, Colli...
Counts the number of unique collisions and gets the collision index. Parameters ---------- Collisions : array_like Array of booleans, containing true if during a collision event, false otherwise. Returns ------- CollisionCount : int Number of unique collisions CollisionIndi...
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def exists(name=None, region=None, key=None, keyid=None, profile=None, vpc_id=None, vpc_name=None, group_id=None): conn = _get_conn(region=region, key=key, keyid=keyid, profile=profile) group = _get_group(conn, name=name, vpc_id=vpc_id, vpc_name=vpc_name, group_id=group_i...
Check to see if a security group exists. CLI example:: salt myminion boto_secgroup.exists mysecgroup
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def print_results(self): if self.package_data.get(): print(.format(c.Style.BRIGHT, c.Fore.BLUE)) for p in self.package_data[]: print( .format( p.get(), c.Style.BRIGHT, c.Fore.CYAN, p.get() )...
Print results of the package command.
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def NDP_Attack_DAD_DoS_via_NA(iface=None, mac_src_filter=None, tgt_filter=None, reply_mac=None): def na_reply_callback(req, reply_mac, iface): mac = req[Ether].src dst = req[IPv6].dst tgt = req[ICMPv6ND_NS].tgt rep = Ether(src=re...
Perform the DAD DoS attack using NS described in section 4.1.3 of RFC 3756. This is done by listening incoming NS messages *sent from the unspecified address* and sending a NA reply for the target address, leading the peer to believe that another node is also performing DAD for that address. By def...
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def cover(self, match_set): assert isinstance(match_set, MatchSet) assert match_set.model.algorithm is self condition = bitstrings.BitCondition.cover( match_set.situation, self.wildcard_probability ) action_candidates...
Return a new classifier rule that can be added to the match set, with a condition that matches the situation of the match set and an action selected to avoid duplication of the actions already contained therein. The match_set argument is a MatchSet instance representing the match set to ...
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def matching_tokens(self, text, start=0): for token_class, regexp in self._tokens: match = regexp.match(text, pos=start) if match: yield token_class, match
Retrieve all token definitions matching the beginning of a text. Args: text (str): the text to test start (int): the position where matches should be searched in the string (see re.match(rx, txt, pos)) Yields: (token_class, re.Match): all token class...
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def install(args: List[str]) -> None: with clean_pip_env(): subprocess_env = os.environ.copy() sitedir_index = _first_sitedir_index() _extend_python_path(subprocess_env, sys.path[sitedir_index:]) process = subprocess.Popen( [sys.executabl...
`pip install` as a function. Accepts a list of pip arguments. .. code-block:: py >>> install(['numpy', '--target', 'site-packages']) Collecting numpy Downloading numpy-1.13.3-cp35-cp35m-manylinux1_x86_64.whl (16.9MB) 100% || 16.9MB 53kB/s Installing collected packa...
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def build_index_from_design(df, design, remove_prefix=None, types=None, axis=1, auto_convert_numeric=True, unmatched_columns=): df = df.copy() if not in design.index.names: design = design.set_index() if remove_prefix is None: remove_prefix = [] if type(remove_prefix) is str: ...
Build a MultiIndex from a design table. Supply with a table with column headings for the new multiindex and a index containing the labels to search for in the data. :param df: :param design: :param remove: :param types: :param axis: :param auto_convert_numeric: :return:
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def ics2task(): from argparse import ArgumentParser, FileType from sys import stdin parser = ArgumentParser(description=) parser.add_argument(, nargs=, type=FileType(), default=stdin, help=) parser.add_argument(, nargs=, help=, default=expanduser()) args = parser.pa...
Command line tool to convert from iCalendar to Taskwarrior
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def _addToSegmentUpdates(self, c, i, segUpdate): if segUpdate is None or len(segUpdate.activeSynapses) == 0: return key = (c, i) if self.segmentUpdates.has_key(key): self.segmentUpdates[key] += [(self.lrnIterationIdx, segUpdate)] else: self.segmentUpdates[key] = ...
Store a dated potential segment update. The "date" (iteration index) is used later to determine whether the update is too old and should be forgotten. This is controlled by parameter ``segUpdateValidDuration``. :param c: TODO: document :param i: TODO: document :param segUpdate: TODO: document
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def obj_box_zoom( im, classes=None, coords=None, zoom_range=(0.9, 1.1), row_index=0, col_index=1, channel_index=2, fill_mode=, cval=0., order=1, is_rescale=False, is_center=False, is_random=False, thresh_wh=0.02, thresh_wh2=12. ): if classes is...
Zoom in and out of a single image, randomly or non-randomly, and compute the new bounding box coordinates. Objects outside the cropped image will be removed. Parameters ----------- im : numpy.array An image with dimension of [row, col, channel] (default). classes : list of int or None ...
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def concentric_circles_path(size): width, height = size x0, y0 = width // 2, height // 2 max_radius = int(sqrt(2) * max(height, width)) yield from fill_concentric_circles(radius=max_radius, center=(x0, y0), size=size)
Yields a set of paths that are concentric circles, moving outwards, about the center of the image. :param size: The (width, height) of the image :return: Yields individual circles, where each circle is a generator that yields pixel coordinates.
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def getOverlayInputMethod(self, ulOverlayHandle): fn = self.function_table.getOverlayInputMethod peInputMethod = VROverlayInputMethod() result = fn(ulOverlayHandle, byref(peInputMethod)) return result, peInputMethod
Returns the current input settings for the specified overlay.
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def str(self, var, default=NOTSET, multiline=False): value = self.get_value(var, default=default) if multiline: return value.replace(, ) return value
:rtype: str
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def decompose_by_component(model, observed_time_series, parameter_samples): with tf.compat.v1.name_scope(, values=[observed_time_series]): [ observed_time_series, is_missing ] = sts_util.canonicalize_observed_time_series_with_mask( observed_time_serie...
Decompose an observed time series into contributions from each component. This method decomposes a time series according to the posterior represention of a structural time series model. In particular, it: - Computes the posterior marginal mean and covariances over the additive model's latent space. -...
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def img2img_transformer2d_n31(): hparams = img2img_transformer2d_base() hparams.batch_size = 1 hparams.num_encoder_layers = 6 hparams.num_decoder_layers = 12 hparams.num_heads = 8 hparams.query_shape = (16, 32) hparams.memory_flange = (16, 32) return hparams
Set of hyperparameters.
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def parse_media_range(range): (type, subtype, params) = parse_mime_type(range) if not in params or not params[] or \ float(params[]) > 1 or float(params[]) < 0: params[] = return (type, subtype, params)
Carves up a media range and returns a tuple of the (type, subtype, params) where 'params' is a dictionary of all the parameters for the media range. For example, the media range 'application/*;q=0.5' would get parsed into: ('application', '*', {'q', '0.5'}) In addition this f...
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def add_node(self, info): if not info.initialized: return graph = self._request_graph(info.ui.control) if graph is None: return IDs = [v.ID for v in graph.nodes] node = Node(ID=make_unique_name("node", IDs)) graph.nodes.append(node) ...
Handles adding a Node to the graph.
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def check(self, completed, failed=None): if len(self) == 0: return True against = set() if self.success: against = completed if failed is not None and self.failure: against = against.union(failed) if self.all: return self.i...
check whether our dependencies have been met.
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def init(): cwd = _getcwd() res = _glfw.glfwInit() os.chdir(cwd) return res
Initializes the GLFW library. Wrapper for: int glfwInit(void);
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def _get_struct_dropshadowfilter(self): obj = _make_object("DropShadowFilter") obj.DropShadowColor = self._get_struct_rgba() obj.BlurX = unpack_fixed16(self._src) obj.BlurY = unpack_fixed16(self._src) obj.Angle = unpack_fixed16(self._src) obj.Distance = unpack_fi...
Get the values for the DROPSHADOWFILTER record.
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def setattr(self, name, val): nodes = self._do_query(multiple=False) try: return self.poco.agent.hierarchy.setAttr(nodes, name, val) except UnableToSetAttributeException as e: raise InvalidOperationException(.format(str(e), self))
Change the attribute value of the UI element. Not all attributes can be casted to text. If changing the immutable attributes or attributes which do not exist, the InvalidOperationException exception is raised. Args: name: attribute name val: new attribute value to cast ...
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def _set_lldp(self, v, load=False): if hasattr(v, "_utype"): v = v._utype(v) try: t = YANGDynClass(v,base=lldp.lldp, is_container=, presence=True, yang_name="lldp", rest_name="lldp", parent=self, path_helper=self._path_helper, extmethods=self._extmethods, register_paths=True, extensions={u: {u:...
Setter method for lldp, mapped from YANG variable /protocol/lldp (container) If this variable is read-only (config: false) in the source YANG file, then _set_lldp is considered as a private method. Backends looking to populate this variable should do so via calling thisObj._set_lldp() directly.
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def list_overlay_names(self): overlay_names = [] for fname in _ls(self._overlays_abspath): name, ext = os.path.splitext(fname) overlay_names.append(name) return overlay_names
Return list of overlay names.
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def read_client_secrets(): client_secrets = _default_client_secrets() secrets = get_secrets_file() if secrets is not None: client_secrets = read_json(secrets) else: from sregistry.defaults import SREGISTRY_CLIENT_SECRETS write_json(client_secrets, SREGISTRY...
for private or protected registries, a client secrets file is required to be located at .sregistry. If no secrets are found, we use default of Singularity Hub, and return a dummy secrets.
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def infos(self, type=None, failed=False): nodes = self.nodes(failed="all") infos = [] for n in nodes: infos.extend(n.infos(type=type, failed=failed)) return infos
Get all infos created by the participants nodes. Return a list of infos produced by nodes associated with the participant. If specified, ``type`` filters by class. By default, failed infos are excluded, to include only failed nodes use ``failed=True``, for all nodes use ``failed=all``. ...
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def build_message(self, checker): solution = % checker.solution if self.with_solutions else return .format(checker.code, checker.msg, solution)
Builds the checker's error message to report
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def filter_composite_from_subgroups(s): dims = [] for letter, sg in zip(, s[2:]): dims.append(.format(letter)) if dims: return .join(dims)
Given a sorted list of subgroups, return a string appropriate to provide as the a composite track's `filterComposite` argument >>> import trackhub >>> trackhub.helpers.filter_composite_from_subgroups(['cell', 'ab', 'lab', 'knockdown']) 'dimA dimB' Parameters ---------- s : list A l...
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def status_counter(self): counter = collections.Counter() for task in self: counter[str(task.status)] += 1 return counter
Returns a `Counter` object that counts the number of task with given status (use the string representation of the status as key).
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def get_reference_line_numeration_marker_patterns(prefix=u): title = u"" if type(prefix) in (str, unicode): title = prefix g_name = u g_close = u space = r patterns = [ space + title + g_name + r + g_close, space + title + g_name + r + g_close, ...
Return a list of compiled regex patterns used to search for the marker. Marker of a reference line in a full-text document. :param prefix: (string) the possible prefix to a reference line :return: (list) of compiled regex patterns.
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def gather_dilated_memory_blocks(x, num_memory_blocks, gap_size, query_block_size, memory_block_size, gather_indices, dire...
Gathers blocks with gaps in between. Args: x: Tensor of shape [length, batch, heads, depth] num_memory_blocks: how many memory blocks to look in "direction". Each will be separated by gap_size. gap_size: an integer indicating the gap size query_block_size: an integer indicating size of query bl...
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def Nu_cylinder_Zukauskas(Re, Pr, Prw=None): r if Re <= 40: c, m = 0.75, 0.4 elif Re < 1E3: c, m = 0.51, 0.5 elif Re < 2E5: c, m = 0.26, 0.6 else: c, m = 0.076, 0.7 if Pr <= 10: n = 0.37 else: n = 0.36 Nu = c*Re**m*Pr**n if Prw: ...
r'''Calculates Nusselt number for crossflow across a single tube at a specified Re. Method from [1]_, also shown without modification in [2]_. .. math:: Nu_{D}=CRe^{m}Pr^{n}\left(\frac{Pr}{Pr_s}\right)^{1/4} Parameters ---------- Re : float Reynolds number with respect to cylinder ...
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def sources(self): try: return self._sources except AttributeError: self._sources = find_sources(self) return self._sources
Returns a dictionary of source methods found on this object, keyed on method name. Source methods are identified by (self, context) arguments on this object. For example: .. code-block:: python def f(self, context): ... is a source method, but ...
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def variations(iterable, optional=lambda x: False): iterable = tuple(iterable) o = [optional(x) for x in iterable] a = set() for p in product([False, True], repeat=sum(o)): p = list(p) v = [b and (b and p.pop(0)) for b in o] v = tuple(...
Returns all possible variations of a sequence with optional items.
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def update_Broyden_J(self): CLOG.debug() delta_vals = self.param_vals - self._last_vals delta_residuals = self.calc_residuals() - self._last_residuals nrm = np.sqrt(np.dot(delta_vals, delta_vals)) direction = delta_vals / nrm vals = delta_residuals / nrm ...
Execute a Broyden update of J
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def start(self): version = self.request("get", "/version") if version != 2: raise GanetiApiError("Cans calm down, this is totally reasonable. Certain features = [] else: raise logging.info("RAPI...
Confirm that we may access the target cluster.