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def crop(self, height, width, center_i=None, center_j=None): height = int(np.round(height)) width = int(np.round(width)) if center_i is None: center_i = float(self.height) / 2 if center_j is None: center_j = float(self.width) / 2 ...
Crop the image centered around center_i, center_j. Parameters ---------- height : int The height of the desired image. width : int The width of the desired image. center_i : int The center height point at which to crop. If not specified, the...
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def orient_to(self, other, index=None, inplace=False, scaling=False): arr_self, arr_other = self._get_samples_shared_with(other, index=index) if scaling: raise NotImplementedError() else: self_mean = arr_self.mean(axis=0) other_mean = arr_other.mean...
Orient this Projection to another dataset. Orient this projection using reflection, rotation and translation to match another projection using procrustes superimposition. Scaling is optional. Args: other (:py:class:`pymds.Projection` or :py:class:`pandas.Dat...
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def _pwl1_to_poly(self, generators): for g in generators: if (g.pcost_model == PW_LINEAR) and (len(g.p_cost) == 2): g.pwl_to_poly() return generators
Converts single-block piecewise-linear costs into linear polynomial.
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def get_jobs_to_queue(self, with_times=False): return self.get_jobs(to_unix(datetime.utcnow()), with_times=with_times)
Returns a list of job instances that should be queued (score lower than current timestamp). If with_times is True a list of tuples consisting of the job instance and it's scheduled execution time is returned.
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def getVentRequiredEnabled(self): command = settings = self.sendCommand(command) flags = int(settings[2], 16) return not (flags & 0x0004)
Returns True if enabled, False if disabled
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def kde_gauss(events_x, events_y, xout=None, yout=None): valid_combi = ((xout is None and yout is None) or (xout is not None and yout is not None) ) if not valid_combi: raise ValueError("Both `xout` and `yout` must be (un)set.") if yout is None and yout is...
Gaussian Kernel Density Estimation Parameters ---------- events_x, events_y: 1D ndarray The input points for kernel density estimation. Input is flattened automatically. xout, yout: ndarray The coordinates at which the KDE should be computed. If set to none, input coordi...
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def connect_delete_namespaced_service_proxy_with_path(self, name, namespace, path, **kwargs): kwargs[] = True if kwargs.get(): return self.connect_delete_namespaced_service_proxy_with_path_with_http_info(name, namespace, path, **kwargs) else: (data) = self.connec...
connect DELETE requests to proxy of Service This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True >>> thread = api.connect_delete_namespaced_service_proxy_with_path(name, namespace, path, async_req=True) >>> result = thr...
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def sorteditems(self, multi=False): for key in sorted(dict.keys(self)): if multi: for value in self.getlist(key): yield key, value else: yield key, self[key]
Return an iterator of ``(key, value)`` pairs, sorted by key. :param multi: If set to `True` the iterator returned will have a pair for each value of each key. Otherwise it will only contain pairs for the lasted added of each key.
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def get_static(self, _, file_name=None): content_type = { : , : , }.get(file_name[-2:]) if not content_type: raise HttpError(HTTPStatus.NOT_FOUND, 42) return HttpResponse(self.load_static(file_name), headers={ : content_type, ...
Get static content for UI.
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def chown(self, path, user=, group=): _complain_ifclosed(self.closed) return self.fs.chown(path, user, group)
Change file owner and group. :type path: str :param path: the path to the file or directory :type user: str :param user: Hadoop username. Set to '' if only setting group :type group: str :param group: Hadoop group name. Set to '' if only setting user :raises: :ex...
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def deregister(self, event, fn): if event in self._handler_dict and fn in self._handler_dict[event]: self._handler_dict[event].remove(fn)
Deregister the handler function from the given event.
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def bend_miter(angle, Di=None, Re=None, roughness=0.0, L_unimpeded=None, method=): rRennelsCraneMillerBlevinsCraneMillerBlevinsRennelsMillerCraneBlevinsMiller if method is None: method = if method == : angle_rad = radians(angle) sin_half_angle = sin(angle_rad*0.5) ...
r'''Returns loss coefficient for any single-joint miter bend in a pipe of angle `angle`, diameter `Di`, Reynolds number `Re`, roughness `roughness` unimpeded downstream length `L_unimpeded`, and using the specified method. This calculation has four methods available. The 'Rennels' method is based on a ...
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def update_nodes(nodes,**kwargs): user_id = kwargs.get() updated_nodes = [] for n in nodes: updated_node_i = update_node(n, flush=False, user_id=user_id) updated_nodes.append(updated_node_i) db.DBSession.flush() return updated_nodes
Update multiple nodes. If new attributes are present, they will be added to the node. The non-presence of attributes does not remove them. %TODO:merge this with the 'update_nodes' functionality in the 'update_netework' function, so we're not duplicating functionality. D.R.Y! returns: a list of upd...
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def random_connection(self): yield random.choice( [conn for conn in self.connections() if conn.alive()])
Pick a random living connection
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def _get_all_containing(self, containing_contigs, name, exclude=None, max_depth=10): contains_name = set() if max_depth < 0: return contains_name if name in containing_contigs: for containing_contig in containing_contigs[name]: ...
containing_contigs is a dict: key=contig name. Value = set of contigs that contain the key. Returns alls contigs called "name" that contain that contig
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def write_assoc(self, assoc): if assoc.get("header", False): return subj = assoc[] db, db_object_id = self._split_prefix(subj) rel = assoc[] qualifier = rel[] if assoc[]: qualifier = + qualifier goid = assoc[][] ev = ...
Write a single association to a line in the output file
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def cl_mutect(self, params, tmp_dir): gatk_jar = self._get_jar("muTect", ["mutect"]) jvm_opts = config_utils.adjust_opts(self._jvm_opts, {"algorithm": {"memory_adjust": {"magnitude": ...
Define parameters to run the mutect paired algorithm.
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def get(self, deviceUid, eventId): if not isinstance(deviceUid, DeviceUid) and isinstance(deviceUid, dict): deviceUid = DeviceUid(**deviceUid) url = "api/v0002/device/types/%s/devices/%s/events/%s" % (deviceUid.typeId, deviceUid.deviceId, eventId) r = self._apiClient.get(u...
Retrieves the last cached message for specified event from a specific device.
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def _nix_collect_garbage(): nixhome = os.path.join(os.path.expanduser(.format(__opts__[])), ) return [os.path.join(nixhome, )]
Make sure we get the right nix-store, too.
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def up(self,x,L_change = 12): y = L_change*ssd.upsample(x,L_change) y = signal.lfilter(self.b,[1],y) return y
Upsample and filter the signal
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def _load_start_paths(self): " Start the Read-Eval-Print Loop. " if self._startup_paths: for path in self._startup_paths: if os.path.exists(path): with open(path, ) as f: code = compile(f.read(), path, ) six....
Start the Read-Eval-Print Loop.
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def shift(self, count=1): if self: self._index = (self._index + count) % len(self) else: self._index = 0
Shift the view a specified number of times. :param count: The count of times to shift the view.
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def build_schema(schema: Schema) -> Mapping[str, Any]: builder = Schemas(build_parameter=build_parameter) return builder.build(schema)
Build JSON schema from a marshmallow schema.
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def and_return_result_of(self, return_value): if not check_func_takes_args(return_value): self._return_value = lambda *args, **kwargs: return_value() else: self._return_value = return_value return self
Causes the double to return the result of calling the provided value. :param return_value: A callable that will be invoked to determine the double's return value. :type return_value: any callable object
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def main(): log.setup_main_logger(console=True, file_logging=False) log.log_sockeye_version(logger) params = argparse.ArgumentParser(description="Rerank nbest lists of translations." " Reranking sorts a list of hypotheses according" ...
Commandline interface to rerank nbest lists.
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def get_comments_by_book(self, book_id): mgr = self._get_provider_manager(, local=True) lookup_session = mgr.get_comment_lookup_session_for_book(book_id, proxy=self._proxy) lookup_session.use_isolated_book_view() return lookup_session.get_comments()
Gets the list of ``Comments`` associated with a ``Book``. arg: book_id (osid.id.Id): ``Id`` of a ``Book`` return: (osid.commenting.CommentList) - list of related comments raise: NotFound - ``book_id`` is not found raise: NullArgument - ``book_id`` is ``null`` raise: Operat...
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def system_with_timeout(i): import subprocess import time cmd=i[] rc=0 to=i.get(,) p=subprocess.Popen(cmd, shell=True) if to != : xto=float(to) t0=time.time() t=0 tx=float(i[]) while p.poll() == None and t<xto: time.sleep(0.1) ...
Input: { cmd - command line (timeout) - timeout in seconds (granularity 0.01 sec) - may cause overheads ... } Output: { return - return code = 0, if successful > 0, if error ...
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def close(self): if self._subprocess is not None: os.killpg(self._subprocess.pid, signal.SIGTERM) self._subprocess = None
Close child subprocess
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def get_color_data(self, condition): if condition not in self.color_icons: condition_lc = condition.lower() if in condition_lc or in condition_lc: if in condition_lc: condition = else: condi...
Disambiguate similarly-named weather conditions, and return the icon and color that match.
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def retry(*dargs, **dkw): if len(dargs) == 1 and callable(dargs[0]): def wrap_simple(f): @six.wraps(f) def wrapped_f(*args, **kw): return Retrying().call(f, *args, **kw) return wrapped_f return wrap_simple(dargs[0]) else: ...
Decorator function that instantiates the Retrying object @param *dargs: positional arguments passed to Retrying object @param **dkw: keyword arguments passed to the Retrying object
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def map(self, f, preservesPartitioning=False): return ( self .mapPartitions(lambda p: (f(e) for e in p), preservesPartitioning) .transform(lambda rdd: rdd.setName(.format(rdd.prev.name(), f))) )
Apply function f :param f: mapping function :rtype: DStream Example: >>> import pysparkling >>> sc = pysparkling.Context() >>> ssc = pysparkling.streaming.StreamingContext(sc, 0.1) >>> ( ... ssc ... .queueStream([[4], [2], [7]]) ...
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def is_break_tag(self, el): name = el.name return name in self.break_tags or name in self.user_break_tags
Check if tag is an element we should break on.
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def formatDuration(self, duration): days = duration.days hours, remainder = divmod(duration.seconds, 3600) minutes, seconds = divmod(remainder, 60) if days: return .format(days, "s" if days > 1 else "", hours, minutes,...
Format the duration. This method could be overridden if really needed, as the duration format in gerrit is an arbitrary string. :param duration: duration in timedelta
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def trigger_update(self, trigger_parent=True): if not self.update_model() or (hasattr(self, "_in_init_") and self._in_init_): return self._trigger_params_changed(trigger_parent)
Update the model from the current state. Make sure that updates are on, otherwise this method will do nothing :param bool trigger_parent: Whether to trigger the parent, after self has updated
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def cat(f=None, o=None): if f is None or o is None: return target = o infiles = asiterable(f) logger.debug("cat {0!s} > {1!s} ".format(" ".join(infiles), target)) with open(target, ) as out: rc = subprocess.call([] + infiles, stdout=out) if rc != 0: msg = "faile...
Concatenate files *f*=[...] and write to *o*
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def _read_as_int(self, addr, numBytes): buf = self.read_register(addr, numBytes) if len(buf) >= 4: return struct.unpack_from("<i", buf)[0] else: rtn = 0 for i, byte in enumerate(buf): rtn |= byte << 8 * i return rtn
Convenience method. Oftentimes we need to read a range of registers to represent an int. This method will automatically read @numBytes registers starting at @addr and convert the array into an int.
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def bound_symbols(self): try: lhs_syms = self.lhs.bound_symbols except AttributeError: lhs_syms = set() try: rhs_syms = self.rhs.bound_symbols except AttributeError: rhs_syms = set() return lhs_syms | rhs_syms
Set of bound SymPy symbols contained within the equation.
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def read_fits_region(filename, errors=): regions = [] hdul = fits.open(filename) for hdu in hdul: if hdu.name == : table = Table.read(hdu) wcs = WCS(hdu.header, keysel=[, , ]) regions_list = FITSRegionParser(table, errors).shapes.to_regions() fo...
Reads a FITS region file and scans for any fits regions table and converts them into `Region` objects. Parameters ---------- filename : str The file path errors : ``warn``, ``ignore``, ``strict`` The error handling scheme to use for handling parsing errors. The default is 'stric...
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def _create_filter_dsl(urlkwargs, definitions): filters = [] for name, filter_factory in definitions.items(): values = request.values.getlist(name, type=text_type) if values: filters.append(filter_factory(values)) for v in values: urlkwargs.add(name, ...
Create a filter DSL expression.
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def Receive(self, replytype, **kw): self.ReceiveSOAP(**kw) ps = self.ps tp = _find_type(ps.body_root) isarray = ((type(tp) in (tuple,list) and tp[1] == ) or _find_arraytype(ps.body_root)) if self.typesmodule is None or isarray: return _Binding.Receive(self, ...
Parse message, create Python object. KeyWord data: faults -- list of WSDL operation.fault typecodes wsaction -- If using WS-Address, must specify Action value we expect to receive.
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def setup(self): neb_dirs = self.neb_dirs if self.backup: for f in VASP_NEB_INPUT_FILES: shutil.copy(f, "{}.orig".format(f)) for path in neb_dirs: poscar = os.path.join(path, "POSCAR") shutil.copy...
Performs initial setup for VaspNEBJob, including overriding any settings and backing up.
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def cmd_line(line, ctrl): clients = ctrl.modules if line == "update start": for client in clients: client.updating_start() elif line == "update stop": for client in clients: client.updating_stop() return line
:type: list[WrapperClient]
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def find_autosummary_in_files(filenames): documented = [] for filename in filenames: f = open(filename, ) lines = f.read().splitlines() documented.extend(find_autosummary_in_lines(lines, filename=filename)) f.close() return documented
Find out what items are documented in source/*.rst. See `find_autosummary_in_lines`.
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def generate_mediation_matrix(dsm): cat = dsm.categories ent = dsm.entities size = dsm.size[0] if not cat: cat = [] * size packages = [e.split()[0] for e in ent] mediation_matrix = [[0 for _ in range(size)] for ...
Generate the mediation matrix of the given matrix. Rules for mediation matrix generation: Set -1 for items NOT to be considered Set 0 for items which MUST NOT be present Set 1 for items which MUST be present Each module has optional dependencies to itself. - Framework...
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def display_context(doc): from rowgenerators.exceptions import DownloadError context = {s.name.lower(): s.as_dict() for s in doc if s.name.lower() != } mandatory_sections = [, ] deletes = [] for k,v in context.items(): try: del v[] except KeyError:...
Create a Jinja context for display
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def set_title(self, s, delay_draw=False): "set plot title" self.conf.relabel(title=s, delay_draw=delay_draw)
set plot title
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def find_config(test_file=None, defaults=None, root=os.curdir): if defaults is None: defaults = [".benchbuild.yml", ".benchbuild.yaml"] def walk_rec(cur_path, root): cur_path = local.path(root) / test_file if cur_path.exists(): return cur_path new_root = local....
Find the path to the default config file. We look at :root: for the :default: config file. If we can't find it there we start looking at the parent directory recursively until we find a file named :default: and return the absolute path to it. If we can't find anything, we return None. Args: ...
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def overall_state_id(self): overall_state = 0 if not self.monitored: overall_state = 5 elif self.acknowledged: overall_state = 1 elif self.downtimed: overall_state = 2 elif self.state_type == : if self.state == : ...
Get the service overall state. The service overall state identifier is the service status including: - the monitored state - the acknowledged state - the downtime state The overall state is (prioritized): - a service is not monitored (5) - a service critical or ...
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def indexFromItem(self, regItem, col=0): sourceIndex = self.sourceModel().indexFromItem(regItem, col=col) return self.mapFromSource(sourceIndex)
Gets the index (with column=0) for the row that contains the regItem If col is negative, it is counted from the end
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def _open_debug_interface(self, conn_id, callback, connection_string=None): self._try_connect(connection_string) callback(conn_id, self.id, True, None)
Enable debug interface for this IOTile device Args: conn_id (int): the unique identifier for the connection callback (callback): Callback to be called when this command finishes callback(conn_id, adapter_id, success, failure_reason)
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def precision(truth, recommend, k=None): if len(recommend) == 0: if len(truth) == 0: return 1. return 0. if k is None: k = len(recommend) return count_true_positive(truth, recommend[:k]) / float(k)
Precision@k. Args: truth (numpy 1d array): Set of truth samples. recommend (numpy 1d array): Ordered set of recommended samples. k (int): Top-k items in `recommend` will be recommended. Returns: float: Precision@k.
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def show_generic_keywords(self, layer): keywords = KeywordIO(layer) self.print_button.setEnabled(False) try: message = keywords.to_message() send_static_message(self, message) except InvalidMessageItemError: pass self.show...
Show the keywords defined for the active layer. .. note:: The print button will be disabled if this method is called. .. versionchanged:: 3.3 - changed parameter from keywords object to a layer object so that we can show extra stuff like CRS and data source in the keywords. ...
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def _merge_slowly(self, other_trajectory, rename_dict): for other_key in rename_dict: new_key = rename_dict[other_key] other_instance = other_trajectory.f_get(other_key) if other_instance.f_is_empty(): with self._nn_interface._disab...
Merges trajectories by loading iteratively items of the other trajectory and store it into the current trajectory. :param rename_dict: Dictionary containing mappings from the old result names in the `other_trajectory` to the new names in the current trajectory.
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def param_str(self, param, s): param.pair = (self.value(s).strip(), str) return True
Parse a str in parameter list
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def insert(self, entity_id, property_uri, value): if not entity_id.startswith("http"): entity_uri = urllib.parse.urljoin(self.base_url, entity_id) else: entity_uri = entity_id if entity_uri.endswith("/"): e...
Method inserts a new entity's property in Fedora4 Repository Args: entity_id(string): Unique ID of Fedora object property_uri(string): URI of property value: Value of the property, can be literal or URI reference Returns: boolean: True if successful chan...
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def show_absolute_url(context, page, lang=None): if not lang: lang = context.get(, pages_settings.PAGE_DEFAULT_LANGUAGE) page = get_page_from_string_or_id(page, lang) if not page: return {: } url = page.get_url_path(language=lang) if url: return {: url} return {: }
Show the url of a page in the right language Example :: {% show_absolute_url page_object %} You can also use the slug of a page:: {% show_absolute_url "my-page-slug" %} Keyword arguments: :param page: the page object, slug or id :param lang: the wanted language \ (defaul...
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def restart(self, hard=False, timeout=30, force=True): body = dict() body[] = { : if hard else , : .format(timeout), : if force else } path = .format(self.uuid) self.cloud_manager.post_request(path, body) object.__setattr__...
Restart the server. By default, issue a soft restart with a timeout of 30s and a hard restart after the timeout. After the a timeout a hard restart is performed if the server has not stopped. Note: API responds immediately (unlike in start), with state: started. This client will, howev...
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def _beyond_unit_bound(self, loglstar): if self.logl_first_update is None: return loglstar >= self.logl_first_update
Check whether we should update our bound beyond the initial unit cube.
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def _set_ldp_rcv_label_silence_time(self, v, load=False): if hasattr(v, "_utype"): v = v._utype(v) try: t = YANGDynClass(v,base=RestrictedClassType(base_type=RestrictedClassType(base_type=long, restriction_dict={: []}, int_size=32), restriction_dict={: [u]}), default=RestrictedClassType(base_ty...
Setter method for ldp_rcv_label_silence_time, mapped from YANG variable /mpls_config/router/mpls/mpls_cmds_holder/ldp/ldp_holder/ldp_rcv_label_silence_time (uint32) If this variable is read-only (config: false) in the source YANG file, then _set_ldp_rcv_label_silence_time is considered as a private method. ...
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def _get_titles(self, limit): raw = .join((self.rawdir, self.files[][])) model = Model(self.graph) col = [, , , ] with open(raw, , encoding=) as csvfile: filereader = csv.reader(csvfile, delimiter=, quotechar=) header = next(filereader) heade...
The file processed here is of the format: #NBK_id GR_shortname OMIM NBK1103 trimethylaminuria 136132 NBK1103 trimethylaminuria 602079 NBK1104 cdls 122470 Where each of the rows represents a mapping between a gr id and an omim id. These are a 1:many relat...
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def explain(self, entry): d = self.get_explanation_dict(entry) print("The uncorrected value of the energy of %s is %f eV" % (entry.composition, d["uncorrected_energy"])) print("The following corrections / screening are applied for %s:\n" % d["compatibility"])...
Prints an explanation of the corrections that are being applied for a given compatibility scheme. Inspired by the "explain" methods in many database methodologies. Args: entry: A ComputedEntry.
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def quality_comparator(video_data): def parse_resolution(res: str) -> Tuple[int, ...]: return tuple(map(int, res.split())) raw_resolution = video_data[] resolution = parse_resolution(raw_resolution) return resolution
Custom comparator used to choose the right format based on the resolution.
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def plot(self, figsize=None, rotation=45): fig, ax = plt.subplots(figsize=figsize) plt.imshow(self._cm, interpolation=, cmap=plt.cm.Blues, aspect=) plt.title() plt.colorbar() tick_marks = np.arange(len(self._labels)) plt.xticks(tick_marks, self._labels, rotation=rotation) plt.yticks(t...
Plot the confusion matrix. Args: figsize: tuple (x, y) of ints. Sets the size of the figure rotation: the rotation angle of the labels on the x-axis.
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def swaggerize_response(response, op): response_spec = get_response_spec(response.status_int, op) bravado_core.response.validate_response( response_spec, op, PyramidSwaggerResponse(response))
Delegate handling the Swagger concerns of the response to bravado-core. :type response: :class:`pyramid.response.Response` :type op: :class:`bravado_core.operation.Operation`
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def _jit_update_fun(predict_fun, loss_fun, optimizer, lr_fun, num_devices): if num_devices == 1: def single_update(i, opt_state, batch, rng): rng, subrng = jax_random.split(rng[0]) _, opt_update = optimizer(lr_fun) params = trax_opt.get_params(opt_state) return opt_update(i, backend.g...
Get jit-ed update function for loss, optimizer, learning rate function.
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def pyminify(options, files): global name_generator if not is_iterable(files): print( "Error: The argument must be a list, tuple, etc of files. " "Strings and bytes wont do anything else prepend = None if options.prepend: try: prepend = ope...
Given an *options* object (from `optparse.OptionParser` or similar), performs minification and/or obfuscation on the given *files* (any iterable containing file paths) based on said *options*. All accepted options can be listed by running ``python __main__.py -h`` or examining the :py:func:`__init__.ma...
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def fetch_group_cached(group_id, failures=True, wait=0, count=None, broker=None): if not broker: broker = get_broker() start = time() if count: while True: if count_group_cached(group_id) == count or wait and (time() - start) * 1000 >= wait >= 0: break ...
Return a list of Tasks for a task group in the cache backend
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def write(self, data): if self.padded: if len(self._bits) > 0: self._flush_bits_to_stream() self._stream.write(data) else: if len(data) == 0: return bits = bytes_to_bits(data) ...
Write data to the stream :data: the data to write to the stream :returns: None
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def Process(self, request, context): LOG.debug("Process called") try: metrics = self.plugin.process( [Metric(pb=m) for m in request.Metrics], ConfigMap(pb=request.Config) ) return MetricsReply(metrics=[m.pb for m in metrics]) ...
Dispatches the request to the plugins process method
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def high_low(data, channels=None, high=None, low=None, full_output=False): if channels is None: data_ch = data else: data_ch = data[:,channels] if data_ch.ndim == 1: data_ch = data_ch.reshape((-1,1)) if high is None: if hasattr(data_ch, ): ...
Gate out high and low values across all specified channels. Gate out events in `data` with values in the specified channels which are larger than or equal to `high` or less than or equal to `low`. Parameters ---------- data : FCSData or numpy array NxD flow cytometry data where N is the nu...
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def verbose_ping(hostname, timeout=WAIT_TIMEOUT, count=NUM_PACKETS, packet_size=PACKET_SIZE, path_finder=False): signal.signal(signal.SIGINT, signal_handler) if hasattr(signal, "SIGBREAK"): signal.signal(signal.SIGBREAK, signal_handler) myStats = MyStats() m...
Send >count< ping to >destIP< with the given >timeout< and display the result.
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def pack_command(self, *args): command = args[0] if in command: args = tuple([Token(s) for s in command.split()]) + args[1:] else: args = (Token(command),) + args[1:] args_output = SYM_EMPTY.join([ ...
Pack a series of arguments into a value SSDB command
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def resize(self, newWidth = 0, newHeight = 0): self.height = newHeight self.width = newWidth
! \~english Resize width and height of rectangles @param newWidth: new width value @param newHeight: new height value \~chinese 重新设定矩形高宽 @param newWidth: 新宽度 @param newHeight: 新高度
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def _cookiecutter_configs_have_changed(template, old_version, new_version): temple.check.is_git_ssh_path(template) repo_path = temple.utils.get_repo_path(template) github_client = temple.utils.GithubClient() api = .format(repo_path) old_config_resp = github_client.get(api, params={: old_versio...
Given an old version and new version, check if the cookiecutter.json files have changed When the cookiecutter.json files change, it means the user will need to be prompted for new context Args: template (str): The git SSH path to the template old_version (str): The git SHA of the old versi...
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def update(self, series_list): if not series_list: self.series_notebook.AddPage(wx.Panel(self, -1), _("+")) return self.updating = True self.series_notebook.DeleteAllPages() for page, attrdict in enumerate(series_list): ...
Updates widget content from series_list Parameters ---------- series_list: List of dict \tList of dicts with data from all series
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def listing(self): "Return a list of filename entries currently in the archive" return [.join([f,ext]) if ext else f for (f,ext) in self._files.keys()]
Return a list of filename entries currently in the archive
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def create_table(self, data, table_name, error_if_exists = False, **kwargs): t insert anything.You passed no sample values, or all the values you passed were null.IF NOT EXISTS CREATE TABLE %s %s ( %s %s );' % (if_not_exists, quote(table_name), quote(k), get_column_type(startdata[k])...
Create a table based on the data, but don\'t insert anything.
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def setup_data(self): data = self.data if len(data) == 0: return type(data)() data = self.geom.setup_data(data) check_required_aesthetics( self.geom.REQUIRED_AES, set(data.columns) | set(self.geom.aes_params), self.geom.__class__...
Prepare/modify data for plotting
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def sonify(annotation, sr=22050, duration=None, **kwargs): length = None if duration is None: duration = annotation.duration if duration is not None: length = int(duration * sr) if annotation.namespace in SONIFY_MAPPING: ann = coerce_annotation(annotation, annotatio...
Sonify a jams annotation through mir_eval Parameters ---------- annotation : jams.Annotation The annotation to sonify sr = : positive number The sampling rate of the output waveform duration : float (optional) Optional length (in seconds) of the output waveform kwargs...
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def get_recurring_bill_by_client(self, *, customer_id, date_begin=None, date_final=None): params = { "customerId": customer_id, } if date_begin and date_final: params[] = date_begin.strftime() params[] = date_final.strftime() return self.clien...
Consulta de las facturas que están pagadas o pendientes por pagar. Se puede consultar por cliente, por suscripción o por rango de fechas. Args: customer_id: date_begin: date_final: Returns:
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def serialize_b58(self, private=True): return ensure_str( base58.b58encode_check(unhexlify(self.serialize(private))))
Encode the serialized node in base58.
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def ip_in_subnet(ip, subnet): ipaddr = int(.join([ % int(x) for x in ip.split()]), 16) netstr, bits = subnet.split() netaddr = int(.join([ % int(x) for x in netstr.split()]), 16) mask = (0xffffffff << (32 - int(bits))) & 0xffffffff return (ipaddr & mask) == (netaddr & mask)
Does IP exists in a given subnet utility. Returns a boolean
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def _get_tough_method(self, method): def tough_method(*args, **kwargs): transaction = self._transaction if not transaction: try: if not self._con.db.status: raise AttributeError if self._maxusage: ...
Return a "tough" version of a connection class method. The tough version checks whether the connection is bad (lost) and automatically and transparently tries to reset the connection if this is the case (for instance, the database has been restarted).
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def gcd2(a, b): while a: a, b = b%a, a return b
Greatest common divisor using Euclid's algorithm.
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def resize(image, width=None, height=None, crop=False, namespace="resized"): return resize_lazy(image=image, width=width, height=height, crop=crop, namespace=namespace, as_url=True)
Returns the url of the resized image
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def generate(env): link.generate(env) env[] = env[] = env[] = env[] = env[] + env[] = SCons.Util.CLVar() env[] = env[] + env[] = env[] = env[] = SCons.Util.CLVar() env[] =
Add Builders and construction variables for applelink to an Environment.
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def key(self) -> Tuple[int, int]: return self._source.index, self._target.index
The unique identifier of the edge consisting of the indexes of its source and target nodes.
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def get_space_system(self, name): url = .format(self._instance, name) response = self._client.get_proto(url) message = mdb_pb2.SpaceSystemInfo() message.ParseFromString(response.content) return SpaceSystem(message)
Gets a single space system by its unique name. :param str name: A fully-qualified XTCE name :rtype: .SpaceSystem
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def generate_submit_array(templates, directories, **kwargs): dirname = kwargs.setdefault(, os.path.curdir) reldirs = [relpath(p, start=dirname) for p in asiterable(directories)] missing = [p for p in (os.path.join(dirname, subdir) for subdir in reldirs) if not os.path.exists(p)] if l...
Generate a array job. For each ``work_dir`` in *directories*, the array job will 1. cd into ``work_dir`` 2. run the job as detailed in the template It will use all the queuing system directives found in the template. If more complicated set ups are required, then this function cannot be used....
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def previous(task): params = task.get_params() previous_params = {} previous_date_params = {} for param_name, param_obj in params: param_value = getattr(task, param_name) if isinstance(param_obj, parameter.DateParameter): previous_date_params[param_name] = param_value ...
Return a previous Task of the same family. By default checks if this task family only has one non-global parameter and if it is a DateParameter, DateHourParameter or DateIntervalParameter in which case it returns with the time decremented by 1 (hour, day or interval)
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def convert_string_value_to_type_value(string_value, data_type): from ast import literal_eval try: if data_type in (str, type(None)): converted_value = str(string_value) elif data_type == int: converted_value = int(string_value) elif data_type == float: ...
Helper function to convert a given string to a given data type :param str string_value: the string to convert :param type data_type: the target data type :return: the converted value
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def iter_descendants_labels(self, ontology, iri, size=None, sleep=None): for label in _help_iterate_labels(self.iter_descendants(ontology, iri, size=size, sleep=sleep)): yield label
Iterates over the labels for the descendants of a given term :param str ontology: The name of the ontology :param str iri: The IRI of a term :param int size: The size of each page. Defaults to 500, which is the maximum allowed by the EBI. :param int sleep: The amount of time to sleep be...
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def dump(self): reading = self.reading if reading is not None: reading = reading.asdict() return { u: str(self.selector), u: reading }
Serialize the state of this stream walker. Returns: dict: The serialized state.
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def sampleset(self): x1, x4 = self.bounding_box dw = self.width * 0.5 x2 = self.x_0 - dw x3 = self.x_0 + dw if self._n_models == 1: w = [x1, x2, x3, x4] else: w = list(zip(x1, x2, x3, x4)) return np.asarray(w)
Return ``x`` array that samples the feature.
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def location_autosuggest(self, **params): service_url = "{url}/{params_path}".format( url=self.LOCATION_AUTOSUGGEST_URL, params_path=self._construct_params( params, self.LOCATION_AUTOSUGGEST_PARAMS) ) return self.make_request( service_...
Location Autosuggest Services Doc URLs: http://business.skyscanner.net/portal/en-GB/ Documentation/Autosuggest http://business.skyscanner.net/portal/en-GB/ Documentation/CarHireAutoSuggest http://business.skyscanner.net/portal/en-GB/ Doc...
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def _parse_impute2_line(self, line): row = line.rstrip("\r\n").split(" ") prob = np.array(row[5:], dtype=float) prob.shape = (prob.shape[0] // 3, 3) dosage = 2 * prob[:, 2] + prob[:, 1] if self.prob_t > 0: dosage[~np.any(prob >= s...
Parses the current IMPUTE2 line (a single variant). Args: line (str): An IMPUTE2 line. Returns: Genotypes: The genotype in dosage format. Warning ======= By default, the genotypes object has multiallelic set to False.
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def _cookie_expiration(self): value = (datetime.datetime.utcnow() + datetime.timedelta(seconds=self._session_duration)) LOGGER.debug(, value.isoformat()) return value
Return the expiration timestamp for the session cookie. :rtype: datetime
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def _verified_frame_length(frame_length, content_type): if content_type == ContentType.FRAMED_DATA and frame_length > MAX_FRAME_SIZE: raise SerializationError( "Specified frame length larger than allowed maximum: {found} > {max}".format( found=frame_length, max=MAX_FRAM...
Verify a frame length value for a message content type. :param int frame_length: Frame length to verify :param ContentType content_type: Message content type to verify against :return: frame length :rtype: int :raises SerializationError: if frame length is too large :raises SerializationError: ...
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def determine_extended_chord6(chord, shorthand=False, no_inversions=False, no_polychords=False): if len(chord) != 6: return False def inversion_exhauster( chord, shorthand, tries, result, polychords, ): if ...
Determine the names of an 6 note chord.
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def get_sortobj(self, goea_results, **kws): nts_goea = MgrNtGOEAs(goea_results).get_goea_nts_prt(**kws) goids = set(nt.GO for nt in nts_goea) go2nt = {nt.GO:nt for nt in nts_goea} grprobj = Grouper("GOEA", goids, self.hdrobj, self.grprdflt.gosubdag, go2nt=go2nt) grprobj....
Return a Grouper object, given a list of GOEnrichmentRecord.