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def _get_batch_name(items, skip_jointcheck=False): batch_names = collections.defaultdict(int) has_joint = any([is_joint(d) for d in items]) for data in items: if has_joint and not skip_jointcheck: batches = dd.get_sample_name(data) else: batches = dd.get_batches(...
Retrieve the shared batch name for a group of items.
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def _trychar(char, fallback, asciimode=None): if asciimode is True: return fallback if hasattr(sys.stdout, ) and sys.stdout.encoding: try: char.encode(sys.stdout.encoding) except Exception: pass else: return char return ...
Logic from IPython timeit to handle terminals that cant show mu Args: char (str): character, typically unicode, to try to use fallback (str): ascii character to use if stdout cannot encode char asciimode (bool): if True, always use fallback Example: >>> char = _trychar('µs', 'u...
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def build_date(self): if len(self.dutinformation) > 0 and (self.dutinformation.get(0).build is not None): return self.dutinformation.get(0).build.date return None
get build date. :return: build date. None if not found
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def move_window(self, destination="", session=None): session = session or self.get() proc = self.cmd( , % (self.get(), self.index), % (session, destination), ) if proc.stderr: raise exc.LibTmuxException(proc.stderr) sel...
Move the current :class:`Window` object ``$ tmux move-window``. Parameters ---------- destination : str, optional the ``target window`` or index to move the window to, default: empty string session : str, optional the ``target session`` or index to mo...
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def get_nearest_edges(G, X, Y, method=None, dist=0.0001): start_time = time.time() if method is None: ne = [get_nearest_edge(G, (x, y)) for x, y in zip(X, Y)] ne = [(u, v) for _, u, v in ne] elif method == : if not cKDTree: raise ImportError() ...
Return the graph edges nearest to a list of points. Pass in points as separate vectors of X and Y coordinates. The 'kdtree' method is by far the fastest with large data sets, but only finds approximate nearest edges if working in unprojected coordinates like lat-lng (it precisely finds the nearest edge ...
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def _extract(self, identifier): conjugation = [] if self.tree.xpath( + identifier.decode() + ): p = self.tree.xpath( + identifier.decode() + )[0].getparent() for font in p.iterfind(): text = self._normalize(font.text_content()) next = font.getnext() text += + self._normalize(next.text_content...
Extracts data from conjugation table.
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def content_val(self, ymldata=None, messages=None): self._ymlproc = YAMLProcessor(self._ymlfile, False) log.debug("BEGIN: Content-based validation of Command dictionary") if ymldata is not None: cmddict = ymldata elif ymldata is None and self._ymlproc.load...
Validates the Command Dictionary to ensure the contents for each of the fields meets specific criteria regarding the expected types, byte ranges, etc.
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def _parse_module_with_import(self, uri): mod = __import__(uri, fromlist=[uri]) obj_strs = [obj for obj in dir(mod) if not obj.startswith()] functions = [] classes = [] for obj_str in obj_strs: if obj_str not in mod.__dict__: ...
Look for functions and classes in an importable module. Parameters ---------- uri : str The name of the module to be parsed. This module needs to be importable. Returns ------- functions : list of str A list of (public) function names...
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def _format_exitcodes(exitcodes): str_exitcodes = ["{}({})".format(_get_exitcode_name(e), e) for e in exitcodes if e is not None] return "{" + ", ".join(str_exitcodes) + "}"
Format a list of exit code with names of the signals if possible
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def regex(self, *pattern, **kwargs): self.pattern(self.build_re(*pattern, **kwargs)) return self
Add re pattern :param pattern: :type pattern: :return: self :rtype: Rebulk
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def _get_closest_ansi_color(r, g, b, exclude=()): assert isinstance(exclude, tuple) saturation = abs(r - g) + abs(g - b) + abs(b - r) if saturation > 30: exclude += (, , , ) distance = 257*257*3 match = for name, (r2, g2, b2) in ANSI_COLORS_TO_RGB.items(...
Find closest ANSI color. Return it by name. :param r: Red (Between 0 and 255.) :param g: Green (Between 0 and 255.) :param b: Blue (Between 0 and 255.) :param exclude: A tuple of color names to exclude. (E.g. ``('ansired', )``.)
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def logger(self) -> Logger: if self._logger is None: self._logger = create_logger(self) return self._logger
A :class:`logging.Logger` logger for the app. This can be used to log messages in a format as defined in the app configuration, for example, .. code-block:: python app.logger.debug("Request method %s", request.method) app.logger.error("Error, of some kind")
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def _run_qmc(self, boot): self._tmp = os.path.join(self.dirs, ".tmpwtre") cmd = [ip.bins.qmc, "qrtt="+self.files.qdump, "otre="+self._tmp] proc = subprocess.Popen(cmd, stderr=subprocess.STDOUT, stdout=subprocess.PIPE) res = proc.communicate() if proc...
runs quartet max-cut on a quartets file
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def get_push_commits(self, repository_id, push_id, project=None, top=None, skip=None, include_links=None): route_values = {} if project is not None: route_values[] = self._serialize.url(, project, ) if repository_id is not None: route_values[] = self._serialize.u...
GetPushCommits. Retrieve a list of commits associated with a particular push. :param str repository_id: The id or friendly name of the repository. To use the friendly name, projectId must also be specified. :param int push_id: The id of the push. :param str project: Project ID or project...
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def execute(self, query): c = self.conn.cursor() result = c.execute(query) for i in result: yield i
Execute a query directly on the database.
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def get_element_tree(parent_to_parse): if isinstance(parent_to_parse, ElementTree): return parent_to_parse element = get_element(parent_to_parse) return ElementTree() if element is None else ElementTree(element)
:return: an ElementTree initialized with the parsed element. :see: get_element(parent_to_parse, element_path)
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def next_address_avoid_collision(self, start_addr): i = 1 while self.is_address_in_use(next_addr(start_addr, i)): i += 1 return next_addr(start_addr, i)
Finds the next address recursively which does not collide with any other address
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def handle_POST(self, environ, start_response): try: length = int(environ[]) data = environ[].read(length) response = self.dispatcher._marshaled_di...
Handles the HTTP POST request. Attempts to interpret all HTTP POST requests as XML-RPC calls, which are forwarded to the server's _dispatch method for handling. Most code taken from SimpleXMLRPCServer with modifications for wsgi and my custom dispatcher.
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def __on_message(self, ws, message): message = json.loads(message) self.logger.debug(json.dumps(message)) table = message[] if in message else None action = message[] if in message else None try: if in message: self.logger.debug("Subscribe...
Handler for parsing WS messages.
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def is_number(obj): try: from numbers import Number except ImportError: from operator import isNumberType return isNumberType(obj) else: return isinstance(obj, Number)
Helper function to determine numbers across Python 2.x and 3.x
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def update(self): if self._receiver_type == AVR_X_2016.type: return self._update_avr_2016() else: return self._update_avr()
Get the latest status information from device. Method executes the update method for the current receiver type.
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def dragMoveEvent( self, event ): filt = self.dragDropFilter() if not filt: super(XTreeWidget, self).dragMoveEvent(event) return filt(self, event)
Processes the drag drop event using the filter set by the \ setDragDropFilter :param event | <QDragEvent>
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def is_training(): curr = ctypes.c_bool() check_call(_LIB.MXAutogradIsTraining(ctypes.byref(curr))) return curr.value
Get status on training/predicting. Returns ------- Current state of training/predicting.
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def __parseParameters(self): self.__parameters = [] for parameter in self.__data[]: self.__parameters.append(Parameter(parameter))
Parses the parameters of data.
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def _onLexerError(self, message): self.isOK = False if message.strip() != "": self.lexerErrors.append(message)
Memorizes a lexer error message
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def toupper(self): return H2OFrame._expr(expr=ExprNode("toupper", self), cache=self._ex._cache)
Translate characters from lower to upper case for a particular column. :returns: new H2OFrame with all strings in the current frame converted to the uppercase.
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def modify_identity(self, identity, **kwargs): if isinstance(identity, zobjects.Identity): self.request(, {: identity._full_data}) return self.get_identities(identity=identity.name)[0] else: attrs = [] for attr, value in kwargs.items(): ...
Modify some attributes of an identity or its name. :param: identity a zobjects.Identity with `id` set (mandatory). Also set items you want to modify/set and/or the `name` attribute to rename the identity. Can also take the name in string and then attributes to modif...
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def sub_menu(request, page_id): page = Page.objects.get(id=page_id) pages = page.children.all() page_languages = settings.PAGE_LANGUAGES return render_to_response("admin/basic_cms/page/sub_menu.html", { : page, : pages, : page_languages, }, context_instance=RequestContex...
Render the children of the requested page with the sub_menu template.
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def validateDocumentFinal(self, doc): if doc is None: doc__o = None else: doc__o = doc._o ret = libxml2mod.xmlValidateDocumentFinal(self._o, doc__o) return ret
Does the final step for the document validation once all the incremental validation steps have been completed basically it does the following checks described by the XML Rec Check all the IDREF/IDREFS attributes definition for validity
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def get_objective_hierarchy_design_session_for_objective_bank(self, objective_bank_id, proxy): if not self.supports_objective_hierarchy_design(): raise errors.Unimplemented() return sessions.ObjectiveHierarchyDesignSession(objective_bank_id, proxy...
Gets the ``OsidSession`` associated with the objective hierarchy design service for the given objective bank. arg: objective_bank_id (osid.id.Id): the ``Id`` of the objective bank arg: proxy (osid.proxy.Proxy): a proxy return: (osid.learning.ObjectiveHierarchyDesignSession...
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def only_horizon(meshes, xs, ys, zs, expose_horizon=False): return {comp_no: mesh.visibilities * (mesh.mus > 0).astype(int) for comp_no, mesh in meshes.items()}, None, None
Check all visible or partial triangles to see if they're behind the horizon, by checking the direction of the z-component of the normals (ie hidden if mu<0)
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def DownloadData(name=, data_dir=DataPath()): if name == : for tmp_name in fits_collection.keys(): DownloadData(name=tmp_name, data_dir=data_dir) return if name not in fits_collection.keys(): raise Exception(%name) print(%name) data_url = fits_collection[name]....
Downloads fit data to DataPath() diretory. If name='all', gets all fit data.
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def p_file_cr_text_1(self, p): try: self.builder.set_file_copyright(self.document, p[2]) except OrderError: self.order_error(, , p.lineno(1)) except CardinalityError: self.more_than_one_error(, p.lineno(1))
file_cr_text : FILE_CR_TEXT file_cr_value
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def _append_national_number(self, national_number): prefix_before_nn_len = len(self._prefix_before_national_number) if (self._should_add_space_after_national_prefix and prefix_before_nn_len > 0 and self._prefix_before_national_number[-1] != _SEPARATOR_BEFORE_NATIONAL_NUMBER): ...
Combines the national number with any prefix (IDD/+ and country code or national prefix) that was collected. A space will be inserted between them if the current formatting template indicates this to be suitable.
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def rebuild(self, scene=None): rect = QRectF(0, 0, self.minimumWidth(), self.minimumHeight()) self.setRect(rect) self._dirty = False self.adjustTitleFont() return True
This method is where you will rebuild the geometry and \ data for a node. :param scene <QGraphicsScene> || None :return <bool> success
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def definition_rst(self, definition, spec_path=None): spec_path = spec_path or self.models_path definitions = self.spec[spec_path] definition_property = definitions[definition][].copy() if not definition_property: self.write(, self.indent_depth) return ...
Prepare and write information about definition :param definition: --name of definition that would be prepared for render :type definition: str, unicode :param spec_path: --path to definitions :type spec_path: str, unicode :return:
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def Write(self, schedule, output_file): root = ET.Element() root.attrib[] = doc = ET.SubElement(root, ) open_tag = ET.SubElement(doc, ) open_tag.text = self._CreateStopsFolder(schedule, doc) if self.split_routes: route_types = set() for route in schedule.GetRouteList(...
Writes out a feed as KML. Args: schedule: A transitfeed.Schedule object containing the feed to write. output_file: The name of the output KML file, or file object to use.
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def save_to_file(filename, content): import os.path path = os.path.abspath(filename) with open(path, "w") as text_file: text_file.write("{}".format(content))
Save content to file. Used by node initial contact but can be used anywhere. :param str filename: name of file to save to :param str content: content to save :return: None :raises IOError: permissions issue saving, invalid directory, etc
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def build_pydot(self, G=None): import pydot iamroot = False if G is None: G = pydot.Dot(graph_type=, bgcolor=None) iamroot=True node = pydot.Node(id(self), shape=, label=self.name) G.add_node(node) for child in self.parameters: ...
Build a pydot representation of this model. This needs pydot installed. Example Usage:: np.random.seed(1000) X = np.random.normal(0,1,(20,2)) beta = np.random.uniform(0,1,(2,1)) Y = X.dot(beta) m = RidgeRegression(X, Y) G = m.build_pydot(...
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def peaking(GdB, fc, Q=3.5, fs=44100.): mu = 10**(GdB/20.) kq = 4/(1 + mu)*np.tan(2*np.pi*fc/fs/(2*Q)) Cpk = (1 + kq *mu)/(1 + kq) b1 = -2*np.cos(2*np.pi*fc/fs)/(1 + kq*mu) b2 = (1 - kq*mu)/(1 + kq*mu) a1 = -2*np.cos(2*np.pi*fc/fs)/(1 + kq) a2 = (1 - kq)/(1 + kq) b = Cpk*np.array([1...
A second-order peaking filter having GdB gain at fc and approximately and 0 dB otherwise. The filter coefficients returns correspond to a biquadratic system function containing five parameters. Parameters ---------- GdB : Lowpass gain in dB fc : Center frequency in Hz Q : Filte...
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def create_keypair(self, xml_bytes): keypair_data = XML(xml_bytes) key_name = keypair_data.findtext("keyName") key_fingerprint = keypair_data.findtext("keyFingerprint") key_material = keypair_data.findtext("keyMaterial") return model.Keypair(key_name, key_fingerprint, ke...
Parse the XML returned by the C{CreateKeyPair} function. @param xml_bytes: XML bytes with a C{CreateKeyPairResponse} root element. @return: The L{Keypair} instance created.
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def signal_optimiser(d, analytes, min_points=5, threshold_mode=, threshold_mult=1., x_bias=0, weights=None, ind=None, mode=): errmsg = if isinstance(analytes, str): analytes = [analytes] if ind is None: ind = np.full(...
Optimise data selection based on specified analytes. Identifies the longest possible contiguous data region in the signal where the relative standard deviation (std) and concentration of all analytes is minimised. Optimisation is performed via a grid search of all possible contiguous data regions...
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def subnet2block(subnet): if not validate_subnet(subnet): return None ip, netmask = subnet.split() prefix = netmask2prefix(netmask) network = ip2network(ip) return _block_from_ip_and_prefix(network, prefix)
Convert a dotted-quad ip address including a netmask into a tuple containing the network block start and end addresses. >>> subnet2block('127.0.0.1/255.255.255.255') ('127.0.0.1', '127.0.0.1') >>> subnet2block('127/255') ('127.0.0.0', '127.255.255.255') >>> subnet2block('127.0.1/255.255') ...
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def process_action(self, raw_user, channel, raw_message): log.info("%s %s %s", channel, raw_user, raw_message) if not raw_user: return target, message = re.match( r self.factory.history.setdefault( ...
Called when a message is received from a channel or user.
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def get_pages(parser, token): try: tag_name, args = token.contents.split(None, 1) except ValueError: var_name = else: args = args.split() if len(args) == 2 and args[0] == : var_name = args[1] else: msg = % tag_name raise...
Add to context the list of page links. Usage: .. code-block:: html+django {% get_pages %} This is mostly used for Digg-style pagination. This call inserts in the template context a *pages* variable, as a sequence of page links. You can use *pages* in different ways: - just print *pa...
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def do_cleaning(self, arg): if arg is not None: if isinstance(arg, list): newlist = [] for entry in arg: newlist.append(self.do_cleaning(entry)) return newlist else: if sys.version_info[0] < 3: ...
Does the actual cleaning by using the delete methods above. :param arg: A string, the string which shell be cleaned. Or a list, in which case each of the strings within the list is cleaned. :return: A string, the cleaned string. Or a list with cleaned string entries.
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def plot_root_to_tip(self, add_internal=False, label=True, ax=None): Treg = self.setup_TreeRegression() if self.clock_model and in self.clock_model: cf = self.clock_model[] else: cf = False Treg.clock_plot(ax=ax, add_internal=add_internal, confidence=cf,...
Plot root-to-tip regression Parameters ---------- add_internal : bool If true, plot inte`rnal node positions label : bool If true, label the plots ax : matplotlib axes If not None, use the provided matplotlib axes to plot the results
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def restricted_cover(l, succsOf): fzl = frozenset(l) lut = dict() for i in l: lut[i] = fzl.intersection(succsOf(i)) return lambda x: lut[x]
Returns a restricted <succsOf> which only takes and yields values from <l>
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def execute(self, context): hook = GoogleCloudStorageHook( google_cloud_storage_conn_id=self.google_cloud_storage_conn_id, delegate_to=self.delegate_to) hook.upload( bucket_name=self.bucket, object_name=self.dst, mime_type=self.mime_t...
Uploads the file to Google cloud storage
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def lipd_read(path): _j = {} dir_original = os.getcwd() try: print("reading: {}".format(print_filename(path))) if os.stat(path).st_size > 1000000: _size = os.stat(path).st_size print("{} :Thatt need the csv output here. _j, _csv = get_csv_f...
Loads a LiPD file from local path. Unzip, read, and process data Steps: create tmp, unzip lipd, read files into memory, manipulate data, move to original dir, delete tmp. :param str path: Source path :return none:
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def get_seh_chain(self): seh_chain = list() try: process = self.get_process() seh = self.get_seh_chain_pointer() while seh != 0xFFFFFFFF: seh_func = process.read_pointer( seh + 4 ) seh_chain.append( (seh, seh_func) ) ...
@rtype: list of tuple( int, int ) @return: List of structured exception handlers. Each SEH is represented as a tuple of two addresses: - Address of this SEH block - Address of the SEH callback function Do not confuse this with the contents of the SEH bloc...
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def memory(self): if self._memory is not None: return self._memory elif self._config is not None: return self._config.defaultMemory else: raise AttributeError("Default value for cannot be determined")
The maximum number of bytes of memory the job will require to run.
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def _remove_attributes(attrs, remove_list): new_attrs = {} for attr in attrs.keys(): if attr not in remove_list: new_attrs[attr] = attrs[attr] return new_attrs
Removes attributes in the remove list from the input attribute dict :param attrs : Dict of operator attributes :param remove_list : list of attributes to be removed :return new_attr : Dict of operator attributes without the listed attributes.
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def children(self, unroll=False, skip_not_present=True): for child_inst in self.inst.children: if skip_not_present: if not child_inst.properties.get(, True): continue if unroll and isinstance(child_inst, ...
Returns an iterator that provides nodes for all immediate children of this component. Parameters ---------- unroll : bool If True, any children that are arrays are unrolled. skip_not_present : bool If True, skips children whose 'ispresent' property is se...
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def _findSwipl(): platform = sys.platform[:3] if platform == "win": (path, swiHome) = _findSwiplWin() elif platform in ("lin", "cyg"): (path, swiHome) = _findSwiplLin() elif platform == "dar": (path, swiHome) = _findSwiplDar() ...
This function makes a big effort to find the path to the SWI-Prolog shared library. Since this is both OS dependent and installation dependent, we may not aways succeed. If we do, we return a name/path that can be used by CDLL(). Otherwise we raise an exception. :return: Tuple. Fist element is the name...
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def trt_pmf(matrices): ntrts, nmags, ndists, nlons, nlats, neps = matrices.shape pmf = numpy.zeros(ntrts) for t in range(ntrts): pmf[t] = 1. - numpy.prod( [1. - matrices[t, i, j, k, l, m] for i in range(nmags) for j in range(ndists) for k in ra...
Fold full disaggregation matrix to tectonic region type PMF. :param matrices: a matrix with T submatrices :returns: an array of T probabilities one per each tectonic region type
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def _get_consumption(self, url, start, end, aggregation): start = self._to_milliseconds(start) end = self._to_milliseconds(end) headers = {"Authorization": "Bearer {}".format(self.access_token)} params = { "aggregation": aggregation, "from": start, ...
Request for both the get_consumption and get_sensor_consumption methods. Parameters ---------- url : str start : dt.datetime end : dt.datetime aggregation : int Returns ------- dict
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def rankdata(inlist): n = len(inlist) svec, ivec = shellsort(inlist) sumranks = 0 dupcount = 0 newlist = [0] * n for i in range(n): sumranks = sumranks + i dupcount = dupcount + 1 if i == n - 1 or svec[i] != svec[i + 1]: averank = sumranks / float(dupcoun...
Ranks the data in inlist, dealing with ties appropritely. Assumes a 1D inlist. Adapted from Gary Perlman's |Stat ranksort. Usage: rankdata(inlist) Returns: a list of length equal to inlist, containing rank scores
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def load_system_host_keys(self, filename=None): if filename is None: filename = os.path.expanduser("~/.ssh/known_hosts") try: self._system_host_keys.load(filename) except IOError: pass return self._syst...
Load host keys from a system (read-only) file. Host keys read with this method will not be saved back by `save_host_keys`. This method can be called multiple times. Each new set of host keys will be merged with the existing set (new replacing old if there are conflicts). If `...
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def pool_create_event(self, pool_info): pool_data = pool_info.get() listeners = pool_data.get() for listener in listeners: l_id = listener.get() l_info = self.neutronclient.show_listener(l_id) self.listener_create_event(l_info)
Process pool create event. Extract pool info and get listener info and call next listen_create_event
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def set_config_defaults(args): defaults = { : , : } for key in defaults: if not args[key]: args[key] = defaults[key] return args
Set configuration defaults :param args: a dict of arguments :type args: dict :return: a dict of arguments :rtype: dict
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def synchronize(self, func=None, wait=None, errors=()): def decorator(func): @wraps(func) def outer(*args, **kwargs): seconds = wait if wait is not None else capybara.default_max_wait_time def inner(): return func(*args, **kw...
This method is Capybara's primary defense against asynchronicity problems. It works by attempting to run a given decorated function until it succeeds. The exact behavior of this method depends on a number of factors. Basically there are certain exceptions which, when raised from the decorated fu...
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def p_select_related_where_statement(self, p): p[0] = SelectRelatedWhereNode(cardinality=p[2], variable_name=p[3], handle=p[6], navigation_chain=p[7], ...
statement : SELECT ONE variable_name RELATED BY navigation_hook navigation_chain WHERE expression | SELECT ANY variable_name RELATED BY navigation_hook navigation_chain WHERE expression | SELECT MANY variable_name RELATED BY navigation_hook navigation_chain WHERE expression
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def save_data(self, trigger_id, **data): title, content = super(ServiceTodoist, self).save_data(trigger_id, **data) if self.token: if title or content or data.get(): content = title + + content + + data.get() self.todoist.add_item(content) ...
let's save the data :param trigger_id: trigger ID from which to save data :param data: the data to check to be used and save :type trigger_id: int :type data: dict :return: the status of the save statement :rtype: boolean
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def from_xml(cls, data, api=None, parser=None): if parser is None: if isinstance(data, str): parser = XML_PARSER_SAX else: parser = XML_PARSER_DOM result = cls(api=api) if parser == XML_PARSER_DOM: import xml.etree.Ele...
Create a new instance and load data from xml data or object. .. note:: If parser is set to None, the functions tries to find the best parse. By default the SAX parser is chosen if a string is provided as data. The parser is set to DOM if an xml.etree.ElementTree.Elem...
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def get(self,request,*args,**kwargs): try: year = int(self.kwargs.get()) except (ValueError, TypeError): year = getIntFromGet(request,) kwargs.update({ : year, : request.GET.get(), }) if kwargs.get() not in EXPENSE_BASES....
Allow passing of basis and time limitations
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def _sample_chain(args): n, idx = args center = sampler.center np.random.seed((sampler._seed + idx) % np.iinfo(np.int32).max) pi = np.random.randint(sampler.n_warmup) prev = sampler.warmup[pi, ] prev = step(sampler, center, prev - center, 0.95) n_samples = max(sampler.n_sample...
Sample a single chain for OptGPSampler. center and n_samples are updated locally and forgotten afterwards.
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def watch_log_for(self, exprs, from_mark=None, timeout=600, process=None, verbose=False, filename=): start = time.time() tofind = [exprs] if isinstance(exprs, string_types) else exprs tofind = [re.compile(e) for e in tofind] matchings = [] reads = "" if len(tofin...
Watch the log until one or more (regular) expression are found. This methods when all the expressions have been found or the method timeouts (a TimeoutError is then raised). On successful completion, a list of pair (line matched, match object) is returned.
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def get_chain_details_by_related_pdb_chains(self, pdb_id, chain_id, pfam_accs): if not pfam_accs: return None associated_pdb_chains = set() pfam_api = self.get_pfam_api() for pfam_acc in pfam_accs: associated_pdb_chains = associated_pdb_chains.union(pfa...
Returns a dict of SCOPe details using info This returns Pfam-level information for a PDB chain i.e. no details on the protein, species, or domain will be returned. If there are SCOPe entries for the associated Pfam accession numbers which agree then this function returns pretty compl...
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def conv_cy(self, cy_cl): if not isinstance(cy_cl, PrefixedUnit): cy_cl = PrefixedUnit(cy_cl, , ) clock = self.machine[] element_size = self.kernel.datatypes_size[self.kernel.datatype] elements_per_cacheline = int(self.machine[]) // element_size it_s = clock/...
Convert cycles (cy/CL) to other units, such as FLOP/s or It/s.
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def by_interval_lookup(self, style_key, style_value): style_attr = style_key if self.style_types[style_key] is bool else None intervals = style_value["interval"] def proc(value, result): try: value = float(value) except TypeError: ...
Return a processor for an "interval" style value. Parameters ---------- style_key : str A style key. style_value : dict A dictionary with an "interval" key whose value consists of a sequence of tuples where each tuple should have the form `(start, ...
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def check_call(state, callstr, argstr=None, expand_msg=None): state.assert_is( ["function_defs", "lambda_functions"], "check_call", ["check_function_def", "check_lambda_function"], ) if expand_msg is None: expand_msg = "To verify it, we reran {{argstr}}. " stu_par...
When checking a function definition of lambda function, prepare has_equal_x for checking the call of a user-defined function. Args: callstr (str): call string that specifies how the function should be called, e.g. `f(1, a = 2)`. ``check_call()`` will replace ``f`` with the function/lambda yo...
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def response(status, description, resource=DefaultResource): def inner(o): value = Response(status, description, resource) try: getattr(o, ).add(value) except AttributeError: setattr(o, , {value}) return o return inner
Define an expected response. The values are based off `Swagger <https://swagger.io/specification>`_.
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def parse_subscription(self, params, region, subscription): topic_arn = subscription.pop() topic_name = topic_arn.split()[-1] if topic_name in self.topics: topic = self.topics[topic_name] manage_dictionary(topic[], , {}) protocol = subscription.pop() ...
Parse a single subscription and reference it in its corresponding topic :param params: Global parameters (defaults to {}) :param subscription: SNS Subscription
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def escape(s): if hasattr(s, ): return s.__html__() return Markup(text_type(s) .replace(, ) .replace(, ) .replace(, ) .replace("& )
Convert the characters &, <, >, ' and " in string s to HTML-safe sequences. Use this if you need to display text that might contain such characters in HTML. Marks return value as markup string.
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def openParametersDialog(params, title=None): QApplication.setOverrideCursor(QCursor(Qt.ArrowCursor)) dlg = ParametersDialog(params, title) dlg.exec_() QApplication.restoreOverrideCursor() return dlg.values
Opens a dialog to enter parameters. Parameters are passed as a list of Parameter objects Returns a dict with param names as keys and param values as values Returns None if the dialog was cancelled
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def _init_steps(self,): self._check_old_yaml_format() config_steps = self.flow_config.steps self._check_infinite_flows(config_steps) steps = [] for number, step_config in config_steps.items(): specs = self._visit_step(number, step_config) steps....
Given the flow config and everything else, create a list of steps to run, sorted by step number. :return: List[StepSpec]
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def cmd_export_all(*args): (output_dir, quality, page_format) = _get_export_params(args) dsearch = get_docsearch() try: os.mkdir(output_dir) except FileExistsError: pass out = [] docs = [d for d in dsearch.docs] docs.sort(key=lambda doc: doc.docid) output_dir =...
Arguments: <output folder> [-- [--quality <0-100>] [--page_format <page_format>]] Export all documents as PDF files. Default quality is 50. Default page format is A4. Possible JSON replies: -- { "status": "error", "exception": "yyy", "reason": "xxxx", "...
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def write(self, output_buffer, kmip_version=enums.KMIPVersion.KMIP_1_0): local_buffer = utils.BytearrayStream() if self._maximum_items: self._maximum_items.write(local_buffer, kmip_version=kmip_version) if self._offset_items: self._offset_items.write(local_buff...
Write the data encoding the Locate request payload to a buffer. Args: output_buffer (stream): A data buffer in which to encode object data, supporting a write method. kmip_version (KMIPVersion): An enumeration defining the KMIP version with which the obje...
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def clean_key(self): key = self.cleaned_data["key"] gpg = get_gpg() result = gpg.import_keys(key) if result.count == 0: raise forms.ValidationError(_("Invalid Key")) return key
Validate the key contains an email address.
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def subscribe(self, user_token, topic): response = _request(, url=self.url_v1( + topic), user_agent=self.user_agent, user_token=user_token, ) _raise_for_status(response)
Subscribe a user to the given topic. :param str user_token: The token of the user. :param str topic: The topic. :raises `requests.exceptions.HTTPError`: If an HTTP error occurred.
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def _compile(self, compile_request): try: argv = self._make_compile_argv(compile_request) except self._HeaderOnlyLibrary: self.context.log.debug(.format(compile_request)) return compiler = compile_request.compiler output_dir = compile_request.output_dir env = compiler.invoca...
Perform the process of compilation, writing object files to the request's 'output_dir'. NB: This method must arrange the output files so that `collect_cached_objects()` can collect all of the results (or vice versa)!
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def serialize_transaction(inputs, outputs, lock_time=0, version=1): serialized_inputs = .join([serialize_input(input) for input in inputs]) serialized_outputs = .join([serialize_output(output) for output in outputs]) return .join([ hexlify(struct.pack(, version)), ...
Serializes a transaction.
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def has_colors(stream): if not hasattr(stream, "isatty"): return False if not stream.isatty(): return False try: import curses curses.setupterm() return curses.tigetnum("colors") > 2 except: return False
Determine if the terminal supports ansi colors.
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def rnoncentral_t(mu, lam, nu, size=None): tau = rgamma(nu / 2., nu / (2. * lam), size) return rnormal(mu, tau)
Non-central Student's t random variates.
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def show_stories(self, raw=False, limit=None): show_stories = self._get_stories(, limit) if raw: show_stories = [story.raw for story in show_stories] return show_stories
Returns list of item ids of latest Show HN stories Args: limit (int): specifies the number of stories to be returned. raw (bool): Flag to indicate whether to transform all objects into raw json. Returns: `list` object containing ids of Show HN storie...
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def clean_video_data(_data): data = _data.copy() title = data.get() if title: data[] = clean_title(title) return data
Clean video data: -> cleans title -> ... Args: _data (dict): Information about the video. Returns: dict: Refined video data.
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def RemoveNIC(self,network_id): return( clc.v2.Requests( clc.v2.API.Call(, % (self.alias,self.id,network_id), session=self.session), alias=self.alias, session=self.session ))
Remove the NIC associated with the provided network from the server. https://www.ctl.io/api-docs/v2/#servers-remove-secondary-network network_id - ID associated with the network to remove >>> network = clc.v2.Networks(location="VA1").Get("10.128.166.0/24") >>> clc.v2.Server(alias='BTDI',id='WA1BT...
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def autosave(self, index): finfo = self.stack.data[index] document = finfo.editor.document() if not document.changed_since_autosave or finfo.newly_created: return autosave_filename = self.get_autosave_filename(finfo.filename) logger.debug(, finfo.filename, au...
Autosave a file. Do nothing if the `changed_since_autosave` flag is not set or the file is newly created (and thus not named by the user). Otherwise, save a copy of the file with the name given by `self.get_autosave_filename()` and clear the `changed_since_autosave` flag. Errors raised ...
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def connect(self, nice_quit_ev): _logger.debug("Connecting to discovered node: [%s]", self.server_host) stop_epoch = time.time() + \ nsq.config.client.MAXIMUM_CONNECT_ATTEMPT_PERIOD_S timeout_s = nsq.config.client.INITIAL_CONNECT_FAIL_WAIT_S backoff_r...
Connect the server. We expect this to implement backoff and all connection logistics for servers that were discovered via a lookup node.
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def docgraph2freqt(docgraph, root=None, include_pos=False, escape_func=FREQT_ESCAPE_FUNC): if root is None: return u"\n".join( sentence2freqt(docgraph, sentence, include_pos=include_pos, escape_func=escape_func) for sentence in docgr...
convert a docgraph into a FREQT string.
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def runStickyEregressions(infile_name,interval_size,meas_err,sticky,all_specs): S A JOKE, FUTURE REFEREES. interval_size : int Number of periods in each sub-interval. meas_err : bool Indicator for whether to add measurement error to DeltaLogC. sticky : bool Indicator for whether ...
Runs regressions for the main tables of the StickyC paper and produces a LaTeX table with results for one "panel". Parameters ---------- infile_name : str Name of tab-delimited text file with simulation data. Assumed to be in the results directory, and was almost surely generated by ma...
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def name(self): return str(conf.lib.clang_getCString(conf.lib.clang_getFileName(self)))
Return the complete file and path name of the file.
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def _deprecated_kwargs(kwargs, arg_newarg): warn_for = [] for (arg, new_kw) in arg_newarg: if arg in kwargs.keys(): val = kwargs.pop(arg) kwargs[new_kw] = val warn_for.append((arg, new_kw)) if len(warn_for) > 0: if len(warn_for) == 1: warn...
arg_newarg is a list of tuples, where each tuple has a pair of strings. ('old_arg', 'new_arg') A DeprecationWarning is raised for the arguments that need to be replaced.
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def load(self, languages=[]): duckling_load = self.clojure.var("duckling.core", "load!") clojure_hashmap = self.clojure.var("clojure.core", "hash-map") clojure_list = self.clojure.var("clojure.core", "list") if languages: clojure_list.invoke(*is...
Loads the Duckling corpus. Languages can be specified, defaults to all. Args: languages: Optional parameter to specify languages, e.g. [Duckling.ENGLISH, Duckling.FRENCH] or supported ISO 639-1 Codes (e.g. ["en", "fr"])
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def name(function): if isinstance(function, types.FunctionType): return function.__name__ else: return str(function)
Retrieve a pretty name for the function :param function: function to get name from :return: pretty name
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def list_nodes_select(call=None): if not call: call = if not get_configured_provider(): return info = [, , , , , , ] return salt.utils.cloud.list_nodes_select( list_nodes_full(call=), __opts__.get(, info), call)
Return a list of the VMs that are on the provider, with select fields
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def rating(self, value): self._rating = value self._thumb = self._link_to_img()
Set the rating parameter and regenerate the thumbnail link.
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def get_default_params(type=): p = Parameters() type = type.upper() p.Metric = p.NumberOfHistogramBins = 32 p.ImageSampler = p.NumberOfSpatialSamples = 2048 p.NewSamplesEveryIteration = True p.NumberOf...
get_default_params(type='BSPLINE') Get `Parameters` struct with parameters that users may want to tweak. The given `type` specifies the type of allowed transform, and can be 'RIGID', 'AFFINE', 'BSPLINE'. For detail on what parameters are available and how they should be used, we refer to t...
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def parse_delay_import_directory(self, rva, size): import_descs = [] while True: try: data = self.get_data( rva, Structure(self.__IMAGE_DELAY_IMPORT_DESCRIPTOR_format__).sizeof() ) except PEFormatError, e: ...
Walk and parse the delay import directory.