Unnamed: 0
int64
0
389k
code
stringlengths
26
79.6k
docstring
stringlengths
1
46.9k
381,300
def threshold_img(data, threshold, mask=None, mask_out=): if mask is not None: mask = threshold_img(mask, threshold, mask_out=mask_out) return data * mask.astype(bool) if mask_out.startswith(): data[data < threshold] = 0 elif mask_out.startswith(): data[data > threshold]...
Threshold data, setting all values in the array above/below threshold to zero. Args: data (ndarray): The image data to threshold. threshold (float): Numeric threshold to apply to image. mask (ndarray): Optional 1D-array with the same length as the data. If passed, the thresho...
381,301
def devices(self): devices = None with self.socket.Connect(): devices = self._command("host:devices") return parse_device_list(devices)
Return a list of connected devices in the form (*serial*, *status*) where status can be any of the following: 1. device 2. offline 3. unauthorized :returns: A list of tuples representing connected devices
381,302
def _get_griddistrict(ding0_filepath): grid_district = os.path.basename(ding0_filepath) grid_district_search = re.search(, grid_district) if grid_district_search: grid_district = int(grid_district_search.group(0)[2:]) return grid_district else: raise (KeyError(.format(grid_d...
Just get the grid district number from ding0 data file path Parameters ---------- ding0_filepath : str Path to ding0 data ending typically `/path/to/ding0_data/"ding0_grids__" + str(``grid_district``) + ".xxx"` Returns ------- int grid_district number
381,303
def validate_scopes(self, client_id, scopes, client, request, *args, **kwargs): if hasattr(client, ): return client.validate_scopes(scopes) return set(client.default_scopes).issuperset(set(scopes))
Ensure the client is authorized access to requested scopes.
381,304
def create_spot_instances(ec2, price, image_id, spec, num_instances=1, timeout=None, tentative=False, tags=None): def spotRequestNotFound(e): return e.error_code == "InvalidSpotInstanceRequestID.NotFound" for attempt in retry_ec2(retry_for=a_long_time, retry_while=inco...
:rtype: Iterator[list[Instance]]
381,305
def as_dict(self): return { "destination": self.destination, "packet_transmit": self.packet_transmit, "packet_receive": self.packet_receive, "packet_loss_count": self.packet_loss_count, "packet_loss_rate": self.packet_loss_rate, "...
ping statistics. Returns: |dict|: Examples: >>> import pingparsing >>> parser = pingparsing.PingParsing() >>> parser.parse(ping_result) >>> parser.as_dict() { "destination": "google.com", "packet_tr...
381,306
def disable(self): self.ticker_text_label.hide() if self.current_observed_sm_m: self.stop_sm_m_observation(self.current_observed_sm_m)
Relieve all state machines that have no active execution and hide the widget
381,307
def add_api_compression(self, api_id, min_compression_size): self.apigateway_client.update_rest_api( restApiId=api_id, patchOperations=[ { : , : , : str(min_compression_size) } ...
Add Rest API compression
381,308
def _profile(self, frame, event, arg): if event.startswith(): return time1 = self.timer() frames = self.frame_stack(frame) if frames: frames.pop() parent_stats = self.stats for f in frames: parent_stats = parent_stats....
The callback function to register by :func:`sys.setprofile`.
381,309
def unmount(self, client): getattr(client, self.unmount_fun)(mount_point=self.path)
Unmounts a backend within Vault
381,310
def check_version(server, version, filename, timeout=SHORT_TIMEOUT): address = VERSION_ENDPOINT.format(server=server) print() log.info(, version) log.info(, address) try: response = requests.get(address, timeout=timeout) response.raise_for_status() except (requests.except...
Check for the latest version of OK and update accordingly.
381,311
def _stinespring_to_choi(data, input_dim, output_dim): trace_dim = data[0].shape[0] // output_dim stine_l = np.reshape(data[0], (output_dim, trace_dim, input_dim)) if data[1] is None: stine_r = stine_l else: stine_r = np.reshape(data[1], (output_dim, trace_dim, input_dim)) retur...
Transform Stinespring representation to Choi representation.
381,312
def _cdf(self, xloc, left, right, cache): left = evaluation.get_forward_cache(left, cache) right = evaluation.get_forward_cache(right, cache) if isinstance(left, Dist): if isinstance(right, Dist): raise evaluation.DependencyError( "under-...
Cumulative distribution function. Example: >>> print(chaospy.Uniform().fwd([-0.5, 0.5, 1.5, 2.5])) [0. 0.5 1. 1. ] >>> print(chaospy.Add(chaospy.Uniform(), 1).fwd([-0.5, 0.5, 1.5, 2.5])) [0. 0. 0.5 1. ] >>> print(chaospy.Add(1, chaospy.Uniform())....
381,313
def dup_idx(arr): _, b = np.unique(arr, return_inverse=True) return np.nonzero(np.logical_or.reduce( b[:, np.newaxis] == np.nonzero(np.bincount(b) > 1), axis=1))[0]
Return the indices of all duplicated array elements. Parameters ---------- arr : array-like object An array-like object Returns ------- idx : NumPy array An array containing the indices of the duplicated elements Examples -------- >>> from root_numpy import dup_idx...
381,314
def get_feature_sequence(self, feature_id, organism=None, sequence=None): data = { : , : [ {: feature_id} ] } data = self._update_data(data, organism, sequence) return self.post(, data)
[CURRENTLY BROKEN] Get the sequence of a feature :type feature_id: str :param feature_id: Feature UUID :type organism: str :param organism: Organism Common Name :type sequence: str :param sequence: Sequence Name :rtype: dict :return: A standard apollo ...
381,315
def SelfReferenceProperty(label=None, collection_name=None, **attrs): if in attrs: raise ConfigurationError( ) return ReferenceProperty(_SELF_REFERENCE, label, collection_name, **attrs)
Create a self reference.
381,316
def update(self): self._tmpdir = tempfile.mkdtemp() try: self._rebase_file = self._tmpdir + print url = header = {: } req = urllib2.Request(url, headers=header) con = urllib2.urlopen(req) with open(s...
Update definitions.
381,317
def mktmp(self): try: if not os.path.isdir(self.location): os.makedirs(self.location) except: log.debug(self.location, exc_info=1) return self
Make the I{location} directory if it doesn't already exits.
381,318
def _call_variants_samtools(align_bams, ref_file, items, target_regions, tx_out_file): config = items[0]["config"] mpileup = prep_mpileup(align_bams, ref_file, config, target_regions=target_regions, want_bcf=True) bcftools = config_utils.get_program("bcftools", config) sa...
Call variants with samtools in target_regions. Works around a GATK VCF 4.2 compatibility issue in samtools 1.0 by removing addition 4.2-only isms from VCF header lines.
381,319
def action_create(self, courseid, taskid, path): path = path.strip() if not path.startswith("/"): path = "/" + path want_directory = path.endswith("/") wanted_path = self.verify_path(courseid, taskid, path, True) if wanted_path is None: ...
Delete a file or a directory
381,320
def set_device_name(self, newname): return self.write(request.SetDeviceName(self.seq, *self.prep_str(newname)))
Sets internal device name. (not announced bluetooth name). requires utf-8 encoded string.
381,321
def construct_rest_of_worlds(self, excluded, fp=None, use_mp=True, simplify=True): geoms = {} raw_data = [] for key in sorted(excluded): locations = excluded[key] for location in locations: assert location in self.locations, "Can't find location {...
Construct many rest-of-world geometries and optionally write to filepath ``fp``. ``excluded`` must be a **dictionary** of {"rest-of-world label": ["names", "of", "excluded", "locations"]}``.
381,322
def parse_qtype(self, param_type, param_value): if param_type == : return self._parse_quniform(param_value) if param_type == : param_value[:2] = np.log(param_value[:2]) return list(np.exp(self._parse_quniform(param_value))) raise RuntimeError("Not su...
parse type of quniform or qloguniform
381,323
def _integrate_scipy(self, intern_xout, intern_y0, intern_p, atol=1e-8, rtol=1e-8, first_step=None, with_jacobian=None, force_predefined=False, name=None, **kwargs): from scipy.integrate import ode ny = intern_y0.shape[-1] nx = intern_xo...
Do not use directly (use ``integrate('scipy', ...)``). Uses `scipy.integrate.ode <http://docs.scipy.org/doc/scipy/reference/generated/scipy.integrate.ode.html>`_ Parameters ---------- \*args : See :meth:`integrate`. name : str (default: 'lsoda'/'dopri5' when jacobia...
381,324
def from_dict(config): return ProxyConfig( http=config.get(), https=config.get(), ftp=config.get(), no_proxy=config.get(), )
Instantiate a new ProxyConfig from a dictionary that represents a client configuration, as described in `the documentation`_. .. _the documentation: https://docs.docker.com/network/proxy/#configure-the-docker-client
381,325
def set_value(self, value: datetime): assert isinstance(value, datetime) self.value = value
Sets the current value
381,326
def absent(name, orgname=None, profile=): grafana if isinstance(profile, string_types): profile = __salt__[](profile) ret = {: name, : None, : None, : {}} datasource = __salt__[](name, orgname, profile) if not datasource: ret[] = True ret[] = .format(name) return re...
Ensure that a data source is present. name Name of the data source to remove. orgname Name of the organization from which the data source should be absent. profile Configuration profile used to connect to the Grafana instance. Default is 'grafana'.
381,327
def plot(self, resolution_constant_regions=20, resolution_smooth_regions=200): if self.eps == 0: x = []; y = [] for I, value in zip(self._indicator_functions, self._values): x.append(I.L) y.append(value) x...
Return arrays x, y for plotting the piecewise constant function. Just the minimum number of straight lines are returned if ``eps=0``, otherwise `resolution_constant_regions` plotting intervals are insed in the constant regions with `resolution_smooth_regions` plotting intervals in the sm...
381,328
def trim_sparse(M, n_std=3, s_min=None, s_max=None): try: from scipy.sparse import coo_matrix except ImportError as e: print(str(e)) print("I am peforming dense normalization by default.") return trim_dense(M.todense()) r = M.tocoo() sparsity = np.array(r.sum(axis=1...
Apply the trimming procedure to a sparse matrix.
381,329
def main(): parser = arg_parser(usage=) parser.add_option(, , type=, default=10, help= ) parser.add_option(, , action=, help=( )) parser.add_option...
Provide the entry point to the subreddit_stats command.
381,330
def create_encoder_config(args: argparse.Namespace, max_seq_len_source: int, max_seq_len_target: int, config_conv: Optional[encoder.ConvolutionalEmbeddingConfig], num_embed_source: int) -> Tuple[encoder.EncoderConfig...
Create the encoder config. :param args: Arguments as returned by argparse. :param max_seq_len_source: Maximum source sequence length. :param max_seq_len_target: Maximum target sequence length. :param config_conv: The config for the convolutional encoder (optional). :param num_embed_source: The size...
381,331
def adjustReplicas(self, old_required_number_of_instances: int, new_required_number_of_instances: int): replica_num = old_required_number_of_instances while replica_num < new_required_number_of_instances: self.replicas.add_repli...
Add or remove replicas depending on `f`
381,332
def InitFromHuntObject(self, hunt_obj, hunt_counters=None, with_full_summary=False): self.urn = rdfvalue.RDFURN("hunts").Add(str(hunt_obj.hunt_id)) self.hunt_id = hunt_obj.hunt_id if (hunt_obj.args.hunt_type == rdf_hunt...
Initialize API hunt object from a database hunt object. Args: hunt_obj: rdf_hunt_objects.Hunt to read the data from. hunt_counters: Optional db.HuntCounters object with counters information. with_full_summary: if True, hunt_runner_args, completion counts and a few other fields will be fil...
381,333
def run_single(workflow, *, registry, db_file, always_cache=True): with JobDB(db_file, registry) as db: job_logger = make_logger("worker", push_map, db) result_logger = make_logger("worker", pull_map, db) @pull def pass_job(source): for msg in source():...
Run workflow in a single thread, storing results in a Sqlite3 database. :param workflow: Workflow or PromisedObject to be evaluated. :param registry: serialization Registry function. :param db_file: filename of Sqlite3 database, give `':memory:'` to keep the database in memory only. :param ...
381,334
def shape(self): if len(self) == 0: return () elif self.is_power_space: try: sub_shape = self[0].shape except AttributeError: sub_shape = () else: sub_shape = () return (len(self),) + sub_shape
Total spaces per axis, computed recursively. The recursion ends at the fist level that does not have a shape. Examples -------- >>> r2, r3 = odl.rn(2), odl.rn(3) >>> pspace = odl.ProductSpace(r2, r3) >>> pspace.shape (2,) >>> pspace2 = odl.ProductSpace(p...
381,335
def close(self): if self._image is None: return empty_image = fits.HDUList() for u in self._image: empty_image.append(u.__class__(data=None, header=None)) self._image.close() self._image = empty_image
Close the object nicely and release all the data arrays from memory YOU CANT GET IT BACK, the pointers and data are gone so use the getData method to get the data array returned for future use. You can use putData to reattach a new data array to the imageObject.
381,336
def list_of_mined(cls): result = [] if PyFunceble.CONFIGURATION["mining"]: if PyFunceble.INTERN["file_to_test"] in PyFunceble.INTERN["mined"]: for element in PyFunceble.INTERN["mined"][ PyFunceble.INTERN[...
Provide the list of mined so they can be added to the list queue. :return: The list of mined domains or URL. :rtype: list
381,337
def render(self, container, descender, state, space_below=0, first_line_only=False): indent_first = (float(self.get_style(, container)) if state.initial else 0) line_width = float(container.width) line_spacing = self.get_style(, container) ...
Typeset the paragraph The paragraph is typeset in the given container starting below the current cursor position of the container. When the end of the container is reached, the rendering state is preserved to continue setting the rest of the paragraph when this method is called with a n...
381,338
def get_example(cls) -> list: if cls.example is not None: return cls.example if cls.items is not None: if isinstance(cls.items, list): return [item.get_example() for item in cls.items] else: return [cls.items.get_example()] ...
Returns an example value for the Array type. If an example isn't a defined attribute on the class we return a list of 1 item containing the example value of the `items` attribute. If `items` is None we simply return a `[1]`.
381,339
def _flush(self, close=False): for channel in self.forward_channels: if close is True: channel.queue.put_next(None) channel.queue._flush_writes() for channels in self.shuffle_channels: for channel in channels: if close is True:...
Flushes remaining output records in the output queues to plasma. None is used as special type of record that is propagated from sources to sink to notify that the end of data in a stream. Attributes: close (bool): A flag denoting whether the channel should be also mar...
381,340
def put(self, message): return self.connection.put(, data=dict(message=message))
Simply test Put a string :param message: str of the message :return: str of the message
381,341
def expand(data): namejohnversionv1namejohnversionv2namelisaversionv1namelisaversionv2ll iterate over it for every possible combination of elements in the lists. If the element in question is not a list, then it is considered unique and repeated for each yielded configuration set. Example .. code-block:: yam...
Generates configuration sets based on the YAML input contents For an introduction to the YAML mark-up, just search the net. Here is one of its references: https://en.wikipedia.org/wiki/YAML A configuration set corresponds to settings for **all** variables in the input template that needs replacing. For exampl...
381,342
def diffusion_coeff_counts(self): return [(key, len(list(group))) for key, group in itertools.groupby(self.diffusion_coeff)]
List of tuples of (diffusion coefficient, counts) pairs. The order of the diffusion coefficients is as in self.diffusion_coeff.
381,343
def getLayout(self, algorithmName, verbose=None): response=api(url=self.___url++str(algorithmName)+, method="H", verbose=verbose, parse_params=False) return response
Returns all the details, including names, parameters, and compatible column types for the Layout algorithm specified by the `algorithmName` parameter. :param algorithmName: Name of the Layout algorithm :param verbose: print more :returns: 200: successful operation
381,344
def FromJsonString(self, value): timezone_offset = value.find() if timezone_offset == -1: timezone_offset = value.find() if timezone_offset == -1: timezone_offset = value.rfind() if timezone_offset == -1: raise ParseError( ) time_value = value[0:timezone_offset] ...
Parse a RFC 3339 date string format to Timestamp. Args: value: A date string. Any fractional digits (or none) and any offset are accepted as long as they fit into nano-seconds precision. Example of accepted format: '1972-01-01T10:00:20.021-05:00' Raises: ParseError: On parsing ...
381,345
def cli(ctx, resource): log = logging.getLogger() assert isinstance(ctx, Context) resource = str(resource).lower() if resource == : resource = IpsManager(ctx) for r in resource.versions.values(): click.secho(r.version.vstring, bold=True) return if resource...
Displays all locally cached <resource> versions available for installation. \b Available resources: ips (default) dev_tools
381,346
def update_user_type(self): if self.rb_tutor.isChecked(): self.user_type = elif self.rb_student.isChecked(): self.user_type = self.accept()
Return either 'tutor' or 'student' based on which radio button is selected.
381,347
def preferred_height(self, cli, width, max_available_height, wrap_lines): complete_state = cli.current_buffer.complete_state column_width = self._get_column_width(complete_state) column_count = max(1, (width - self._required_margin) // column_width) return int(math.ceil(len(com...
Preferred height: as much as needed in order to display all the completions.
381,348
def _get_default(self, obj): if self.name in obj._property_values: raise RuntimeError("Bokeh internal error, does not handle the case of self.name already in _property_values") is_themed = obj.themed_values() is not None and self.name in obj.themed_values() de...
Internal implementation of instance attribute access for default values. Handles bookeeping around |PropertyContainer| value, etc.
381,349
def doDirectPayment(self, params): defaults = {"method": "DoDirectPayment", "paymentaction": "Sale"} required = ["creditcardtype", "acct", "expdate", "cvv2", "ipaddress", "firstname", ...
Call PayPal DoDirectPayment method.
381,350
def process(self): print(.format(len(self.file_path_list))) print(.format(self.file_path_list)) hunt_action = flows_pb2.FileFinderAction( action_type=flows_pb2.FileFinderAction.DOWNLOAD) hunt_args = flows_pb2.FileFinderArgs( paths=self.file_path_list, action=hunt_action) return ...
Construct and start a new File hunt. Returns: The newly created GRR hunt object. Raises: RuntimeError: if no items specified for collection.
381,351
def get_poll(self, arg, *, request_policy=None): if isinstance(arg, str): match = self._url_re.match(arg) if match: arg = match.group() return self._http_client.get(.format(self._POLLS, arg), request_poli...
Retrieves a poll from strawpoll. :param arg: Either the ID of the poll or its strawpoll url. :param request_policy: Overrides :attr:`API.requests_policy` for that \ request. :type request_policy: Optional[:class:`RequestsPolicy`] :raises HTTPException: Requesting the poll faile...
381,352
def get_last_config_update_time_output_last_config_update_time(self, **kwargs): config = ET.Element("config") get_last_config_update_time = ET.Element("get_last_config_update_time") config = get_last_config_update_time output = ET.SubElement(get_last_config_update_time, "output"...
Auto Generated Code
381,353
def h_kinetic(T, P, MW, Hvap, f=1): r return (2*f)/(2-f)*(MW/(1000*2*pi*R*T))**0.5*(Hvap**2*P*MW)/(1000*R*T**2)
r'''Calculates heat transfer coefficient for condensation of a pure chemical inside a vertical tube or tube bundle, as presented in [2]_ according to [1]_. .. math:: h = \left(\frac{2f}{2-f}\right)\left(\frac{MW}{1000\cdot 2\pi R T} \right)^{0.5}\left(\frac{H_{vap}^2 P \cdot MW}{1000\cdot R...
381,354
def graph_from_voxels(fg_markers, bg_markers, regional_term = False, boundary_term = False, regional_term_args = False, boundary_term_args = False): logger = Logger.getInstance() ...
Create a graph-cut ready graph to segment a nD image using the voxel neighbourhood. Create a `~medpy.graphcut.maxflow.GraphDouble` object for all voxels of an image with a :math:`ndim * 2` neighbourhood. Every voxel of the image is regarded as a node. They are connected to their immediate neig...
381,355
def source_filename(self, docname: str, srcdir: str): docpath = Path(srcdir, docname) parent = docpath.parent imgpath = parent.joinpath(self.filename) if not imgpath.exists(): msg = f raise SphinxError(msg) return imgpath
Get the full filename to referenced image
381,356
def settings_system_update(self, data): data["auth_password"] = self._password response = self._put(url.settings_system, body=data) self._check_response(response, 200)
Set system settings. Uses PUT to /settings/system interface :Args: * *data*: (dict) Settings dictionary as specified `here <https://cloud.knuverse.com/docs/api/#api-System_Settings-Set_System_Settings>`_. :Returns: None
381,357
def state_by_node2state_by_state(tpm): tpm = np.array(tpm) tpm = to_multidimensional(tpm) N = tpm.shape[-1] S = 2**N sbs_tpm = np.zeros((S, S)) if not np.any(np.logical_and(tpm < 1, tpm > 0)): for previous_state_index in range(S): ...
Convert a state-by-node TPM to a state-by-state TPM. .. important:: A nondeterministic state-by-node TPM can have more than one representation as a state-by-state TPM. However, the mapping can be made to be one-to-one if we assume the TPMs to be conditionally independent. Therefore,...
381,358
def exception(self, e): self.logged_exception(e) self.logger.exception(e)
Log an error messsage. :param e: Exception to log.
381,359
def sync_header_chain(cls, path, bitcoind_server, last_block_id ): current_block_id = SPVClient.height( path ) if current_block_id is None: assert USE_TESTNET current_block_id = -1 assert (current_block_id >= 0 and USE_MAINNET) or USE_TESTNET if current...
Synchronize our local block headers up to the last block ID given. @last_block_id is *inclusive* @bitcoind_server is host:port or just host
381,360
def _set_time_property(self, v, load=False): if hasattr(v, "_utype"): v = v._utype(v) try: t = YANGDynClass(v,base=time_property.time_property, is_container=, presence=False, yang_name="time-property", rest_name="time-property", parent=self, path_helper=self._path_helper, extmethods=self._extme...
Setter method for time_property, mapped from YANG variable /ptp_state/time_property (container) If this variable is read-only (config: false) in the source YANG file, then _set_time_property is considered as a private method. Backends looking to populate this variable should do so via calling thisObj._s...
381,361
def _onMouseWheel(self, evt): x = evt.GetX() y = self.figure.bbox.height - evt.GetY() delta = evt.GetWheelDelta() rotation = evt.GetWheelRotation() rate = evt.GetLinesPerAction() step = rate*float(rotation)/delta evt...
Translate mouse wheel events into matplotlib events
381,362
def get_all_chains(self): return [self.get_chain(i) for i in range(len(self.leaves))]
Assemble and return a list of all chains for all leaf nodes to the merkle root.
381,363
def from_string(cls, string, *, default_func=None): if not isinstance(string, str): raise TypeError(f) parts = string.split(, 1) if len(parts) == 2: protocol, address = parts else: item, = parts protocol = None if defa...
Construct a Service from a string. If default_func is provided and any ServicePart is missing, it is called with default_func(protocol, part) to obtain the missing part.
381,364
def asset_view_atype(self, ): if not self.cur_asset: return atype = self.cur_asset.atype self.view_atype(atype)
View the project of the current atype :returns: None :rtype: None :raises: None
381,365
def delete_dcnm_out_nwk(self, tenant_id, fw_dict, is_fw_virt=False): tenant_name = fw_dict.get() ret = self._delete_service_nwk(tenant_id, tenant_name, ) if ret: res = fw_const.DCNM_OUT_NETWORK_DEL_SUCCESS LOG.info("out Service network deleted for tenant %s", ...
Delete the DCNM OUT network and update the result.
381,366
def __add_item(self, item, keys=None): if(not keys or not len(keys)): raise Exception( % (self.__class__.__name__, str(item))) direct_key = tuple(keys) for key in keys: key_type = str(type(key)) if(no...
Internal method to add an item to the multi-key dictionary
381,367
def get_plugin(cls, name=None, **kwargs): if isinstance(name, KurtPlugin): return name if in kwargs: kwargs[] = kwargs[].lower() if name: kwargs["name"] = name if not kwargs: raise ValueError, "No arguments" for plugin i...
Returns the first format plugin whose attributes match kwargs. For example:: get_plugin(extension="scratch14") Will return the :class:`KurtPlugin` whose :attr:`extension <KurtPlugin.extension>` attribute is ``"scratch14"``. The :attr:`name <KurtPlugin.name>` is used as th...
381,368
def getid(self, idtype): memorable_id = None while memorable_id in self._ids: l=[] for _ in range(4): l.append(str(randint(0, 19))) memorable_id = .join(l) self._ids.append(memorable_id) return idtype + + memorable_id
idtype in Uniq constants
381,369
def gather_layer_info(self): for i in range(len(self.cc[0])): layer_radii = [x[i].tags[] for x in self.cc] self.radii_layers.append(layer_radii) layer_alpha = [x[i].tags[] for x in self.cc] self.alpha_layers.append(layer_alpha) layer_ca = [x[i...
Extracts the tagged coiled-coil parameters for each layer.
381,370
def authentication_required(meth): def check(cls, *args, **kwargs): if cls.authenticated: return meth(cls, *args, **kwargs) raise Error("Authentication required") return check
Simple class method decorator. Checks if the client is currently connected. :param meth: the original called method
381,371
def make_data(): a = { (1,1):.25, (1,2):.15, (1,3):.2, (2,1):.3, (2,2):.3, (2,3):.1, (3,1):.15, (3,2):.65, (3,3):.05, (4,1):.1, (4,2):.05, (4,3):.8 } epsilon = 0.01 I,p = multidict({1:5, 2:6, 3:8, 4:20}) K,LB = multidict({1:.2, 2:.3, 3:.2}) return I,K...
creates example data set
381,372
def apply(self, data_source): dataframe = self.__get_dataframe(data_source, use_target=False) dataframe = self.__cleaner.apply(dataframe) dataframe = self.__transformer.apply(dataframe) return dataframe
Called with the predict data (new information). @param data_source: Either a pandas.DataFrame or a file-like object.
381,373
def implemented(cls, for_type): for function in cls.required(): if not function.implemented_for_type(for_type): raise TypeError( "%r doesn't implement %r so it cannot participate in " "the protocol %r." % (for_type...
Assert that protocol 'cls' is implemented for type 'for_type'. This will cause 'for_type' to be registered with the protocol 'cls'. Subsequently, protocol.isa(for_type, cls) will return True, as will isinstance, issubclass and others. Raises: TypeError if 'for_type' doesn't...
381,374
def get_api_link(self): url = self._api_link if url: qs = self.get_qs() url = "%s?type=choices" % url if qs: url = "%s&amp;%s" % (url, u.join([u % (k, urllib.quote(unicode(v).encode())) \ ...
Adds a query string to the api url. At minimum adds the type=choices argument so that the return format is json. Any other filtering arguments calculated by the `get_qs` method are then added to the url. It is up to the destination url to respect them as filters.
381,375
def get_tac_permissions(calendar_id): return _process_get_perm_resp( get_permissions_url, post_tac_resource(get_permissions_url, _create_get_perm_body(calendar_id)), TrumbaCalendar.TAC_CAMPUS_CODE, calendar_id)
Return a list of sorted Permission objects representing the user permissions of a given Tacoma calendar. :return: a list of trumba.Permission objects corresponding to the given campus calendar. None if error, [] if not exists raise DataFailureException or a corresponding TrumbaExce...
381,376
def _adjacent_tri(self, edge, i): if not np.isscalar(i): i = [x for x in i if x not in edge][0] try: pt1 = self._edges_lookup[edge] pt2 = self._edges_lookup[(edge[1], edge[0])] except KeyError: return None if pt1 == i...
Given a triangle formed by edge and i, return the triangle that shares edge. *i* may be either a point or the entire triangle.
381,377
def injector_gear_2_json(self): LOGGER.debug("InjectorCachedGear.injector_gear_2_json") json_obj = { : self.id, : self.name, : self.admin_queue, : self.description, : if self.running else } return json_obj
transform this local object to JSON. :return: the JSON from this local object
381,378
def get_property(obj, name): if obj == None: raise Exception("Object cannot be null") if name == None: raise Exception("Property name cannot be null") name = name.lower() try: for property_name in dir(obj): i...
Gets value of object property specified by its name. :param obj: an object to read property from. :param name: a name of the property to get. :return: the property value or null if property doesn't exist or introspection failed.
381,379
def apply_filters(self, filters): _configs = self.configs _stats = self.stats self.configs = {} self.stats = {} for f in filters: if f in _configs: self.configs[f] = _configs[f] elif f in _stats: self.stats[f] = _st...
It applies a specified filters. The filters are used to reduce the control groups which are accessed by get_confgs, get_stats, and get_defaults methods.
381,380
def sun_declination(day): day_of_year = day.toordinal() - date(day.year, 1, 1).toordinal() day_angle = 2 * pi * day_of_year / 365 declination_radians = sum([ 0.006918, 0.001480*sin(3*day_angle), 0.070257*sin(day_angle), 0.000907*sin(2*day_angle), -0.399912*cos(da...
Compute the declination angle of the sun for the given date. Uses the Spencer Formula (found at http://www.illustratingshadows.com/www-formulae-collection.pdf) :param day: The datetime.date to compute the declination angle for :returns: The angle, in degrees, of the angle of declination
381,381
def send_video_note(chat_id, video_note, duration=None, length=None, reply_to_message_id=None, reply_markup=None, disable_notification=False, **kwargs): files = None if isinstance(video_note, InputFile): files = [video_note] video = None elif not ...
Use this method to send video files, Telegram clients support mp4 videos (other formats may be sent as Document). :param chat_id: Unique identifier for the target chat or username of the target channel (in the format @channelusername) :param video_note: Video to send. Pass a file_id as String to send a video t...
381,382
def read_hotkey(suppress=True): queue = _queue.Queue() fn = lambda e: queue.put(e) or e.event_type == KEY_DOWN hooked = hook(fn, suppress=suppress) while True: event = queue.get() if event.event_type == KEY_UP: unhook(hooked) with _pressed_events_lock: ...
Similar to `read_key()`, but blocks until the user presses and releases a hotkey (or single key), then returns a string representing the hotkey pressed. Example: read_hotkey() # "ctrl+shift+p"
381,383
def get_mimetype(self): if hasattr(self, ): if (isinstance(self._mimetype, (tuple, list,)) and len(self._mimetype) == 2): return self._mimetype else: raise NodeError( ) mtype, encoding = mime...
Mimetype is calculated based on the file's content. If ``_mimetype`` attribute is available, it will be returned (backends which store mimetypes or can easily recognize them, should set this private attribute to indicate that type should *NOT* be calculated).
381,384
def timeit(output): b = time.time() yield print output, % (time.time()-b)
If output is string, then print the string and also time used
381,385
def gps_rtk_send(self, time_last_baseline_ms, rtk_receiver_id, wn, tow, rtk_health, rtk_rate, nsats, baseline_coords_type, baseline_a_mm, baseline_b_mm, baseline_c_mm, accuracy, iar_num_hypotheses, force_mavlink1=False): return self.send(self.gps_rtk_encode(time_last_baseline_ms, rtk_re...
RTK GPS data. Gives information on the relative baseline calculation the GPS is reporting time_last_baseline_ms : Time since boot of last baseline message received in ms. (uint32_t) rtk_receiver_id : Identification of connected RTK receiver. (uint8_t) ...
381,386
def init_db_conn(connection_name, HOSTS=None): el = elasticsearch.Elasticsearch(hosts=HOSTS) el_pool.connections[connection_name] = ElasticSearchClient(el)
Initialize a redis connection by each connection string defined in the configuration file
381,387
def executor(self) -> "ThreadPoolExecutor": if not isinstance(self.__executor, ThreadPoolExecutor) or self.__executor.is_shutdown: self.configure() return self.__executor
Executor instance. :rtype: ThreadPoolExecutor
381,388
def has_stack(self, stack_name): cf = self.cf_client try: resp = cf.describe_stacks(StackName=stack_name) if len(resp["Stacks"]) != 1: return False msg = str(e) if "Stack with id {0} does no...
Checks if a CloudFormation stack with given name exists :param stack_name: Name or ID of the stack :return: True if stack exists. False otherwise
381,389
def update_hosts(self, host_names): if self.host_access: curr_hosts = [access.host.name for access in self.host_access] else: curr_hosts = [] if set(curr_hosts) == set(host_names): log.info( ) return None n...
Primarily for puppet-unity use. Update the hosts for the lun if needed. :param host_names: specify the new hosts which access the LUN.
381,390
def getMachine(self, machineName): url = self._url + "/%s" % machineName return Machine(url=url, securityHandler=self._securityHandler, initialize=True, proxy_url=self._proxy_url, proxy_port=self._proxy_...
returns a machine object for a given machine Input: machineName - name of the box ex: SERVER.DOMAIN.COM
381,391
def pairs(args): import jcvi.formats.bed p = OptionParser(pairs.__doc__) p.set_pairs() opts, targs = p.parse_args(args) if len(targs) != 1: sys.exit(not p.print_help()) samfile, = targs bedfile = samfile.rsplit(".", 1)[0] + ".bed" if need_update(samfile, bedfile): ...
See __doc__ for OptionParser.set_pairs().
381,392
def svg(self, value): if len(value) < 500: self._svg = value return try: root = ET.fromstring(value) except ET.ParseError as e: log.error("Canxmlnsxmlns:xlink', "http://www.w3.org/1999/xlink") if len(root.findall("{http://www.w3...
Set SVG field value. If the svg has embed base64 element we will extract them to disk in order to avoid duplication of content
381,393
def job_file(self): job_file_name = % (self.name) job_file_path = os.path.join(self.initial_dir, job_file_name) self._job_file = job_file_path return self._job_file
The path to the submit description file representing this job.
381,394
def add_permission(self, perm): self.Permissions(permission=perm) PermissionCache.flush() self.save()
Soyut Role Permission nesnesi tanımlamayı sağlar. Args: perm (object):
381,395
def start_record(): global record, playback, current if record: raise StateError("Already recording.") if playback: raise StateError("Currently playing back.") record = True current = ReplayData() install(RecordingHTTPConnection, RecordingHTTPSConnection)
Install an httplib wrapper that records but does not modify calls.
381,396
def zoomedHealpixMap(title, map, lon, lat, radius, xsize=1000, **kwargs): reso = 60. * 2. * radius / xsize hp.gnomview(map=map, rot=[lon, lat, 0], title=title, xsize=xsize, reso=reso, degree=False, **kwargs)
Inputs: lon (deg), lat (deg), radius (deg)
381,397
def _make_sql_params(self,kw): return [ %k for k in kw.keys() ] for k,v in kw.iteritems(): vals.append( %k) return vals
Make a list of strings to pass to an SQL statement from the dictionary kw with Python types
381,398
def dasopr(fname): fname = stypes.stringToCharP(fname) handle = ctypes.c_int() libspice.dasopr_c(fname, ctypes.byref(handle)) return handle.value
Open a DAS file for reading. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/dasopr_c.html :param fname: Name of a DAS file to be opened. :type fname: str :return: Handle assigned to the opened DAS file. :rtype: int
381,399
def _execute_cell(args, cell_body): env = google.datalab.utils.commands.notebook_environment() config = google.datalab.utils.commands.parse_config(cell_body, env, False) or {} parameters = config.get() or [] if parameters: jsonschema.validate({: parameters}, BigQuerySchema.QUERY_PARAMS_SCHEMA) table_na...
Implements the BigQuery cell magic used to execute BQ queries. The supported syntax is: %%bq execute <args> [<inline SQL>] Args: args: the optional arguments following '%%bq execute'. cell_body: optional contents of the cell Returns: QueryResultsTable containing query result