messages listlengths 3 3 | meta dict |
|---|---|
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
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