messages listlengths 3 3 | meta dict |
|---|---|
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "json_extraction",
"expected_keywords": [
"sample_id",
"site_id",
"recommended_action"
],
"requires_json": true
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "bash_mount_check",
"expected_keywords": [
"mountpoint",
"df -h",
"exit 1",
"set -euo pipefail"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "aws_s3",
"expected_keywords": [
"aws s3 sync",
"--dryrun",
"--only-show-errors",
"S3"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "workflow_checklist",
"expected_keywords": [
"raw",
"logs",
"results",
"checksums",
"reproducible"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "pandas_duplicate_check",
"expected_keywords": [
"pandas",
"groupby",
"duplicated",
"duplicate_count"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "cron_explanation",
"expected_keywords": [
"minute",
"hour",
"day",
"log"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "csv_validation",
"expected_keywords": [
"pandas",
"required columns",
"duplicate",
"sample_id",
"Validation"
],
"requires_json": false
} |
[
{
"role": "system",
"content": "You are a careful bioinformatics and data-engineering coding assistant. You help with Python, pandas, bash, AWS CLI, cron, file validation, scientific data organization, and reproducible workflows. When you write code, prefer clear comments, safe defaults, and practical error... | {
"task_type": "fastq_manifest",
"expected_keywords": [
"fastq.gz",
"sample_id",
"R1",
"R2",
"csv"
],
"requires_json": false
} |
End of preview. Expand in Data Studio
YAML Metadata Warning:The task_categories "text2text-generation" is not in the official list: text-classification, token-classification, table-question-answering, question-answering, zero-shot-classification, translation, summarization, feature-extraction, text-generation, fill-mask, sentence-similarity, text-to-speech, text-to-audio, automatic-speech-recognition, audio-to-audio, audio-classification, audio-text-to-text, voice-activity-detection, depth-estimation, image-classification, object-detection, image-segmentation, text-to-image, image-to-text, image-to-image, image-to-video, unconditional-image-generation, video-classification, reinforcement-learning, robotics, tabular-classification, tabular-regression, tabular-to-text, table-to-text, multiple-choice, text-ranking, text-retrieval, time-series-forecasting, text-to-video, image-text-to-text, image-text-to-image, image-text-to-video, visual-question-answering, document-question-answering, zero-shot-image-classification, graph-ml, mask-generation, zero-shot-object-detection, text-to-3d, image-to-3d, image-feature-extraction, video-text-to-text, keypoint-detection, visual-document-retrieval, any-to-any, video-to-video, other
Bio-DevOps Synthetic Instructions
This dataset contains synthetic instruction-following examples for biomedical-style data-engineering and scientific-computing workflows.
It was created for educational and portfolio use as part of a LoRA/QLoRA fine-tuning project using Qwen/Qwen2.5-Coder-7B-Instruct.
Related model:
AiLLMBS/qwen25-coder-bio-devops-lora
Dataset Contents
The dataset includes synthetic examples for:
- Python CSV validation
- pandas duplicate checks
- bash mount checks
- AWS S3 sync command generation
- cron expression explanation
- FASTQ manifest generation
- reproducible workflow checklist generation
- structured JSON extraction from synthetic workflow messages
Files
train.jsonleval.jsonl
Each row contains a chat-style instruction example with:
messagesmeta.task_typemeta.expected_keywordsmeta.requires_json
Data Source
This dataset is synthetically generated by project scripts.
It does not contain:
- PHI
- private employer data
- proprietary tickets
- internal emails
- client-specific workflows
- copyrighted book text
The examples use synthetic sample IDs, site IDs, file paths, S3 bucket names, and workflow messages.
Intended Use
This dataset is intended for:
- educational LoRA/QLoRA fine-tuning
- instruction-format experimentation
- synthetic code-assistant training examples
- portfolio demonstration of dataset creation and model evaluation
- safe local experimentation with coding-focused LLM adapters
Not Intended For
This dataset is not intended for:
- clinical decision support
- medical diagnosis
- training on PHI
- reproducing private employer workflows
- production automation without human review
Limitations
The dataset is synthetic and template-based. Models trained on it may overfit to repeated patterns and may not generalize well to diverse real-world workflows.
Generated code, shell commands, and AWS commands should always be reviewed before use.
Recommended Evaluation
Models trained on this dataset should be evaluated with:
- held-out prompts
- keyword coverage
- JSON validity checks
- unit tests for generated Python code
- manual review of shell commands
- base-model vs adapter comparison
- failure-case analysis
License
This dataset is released under the Apache-2.0 license.
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