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repo stringlengths 2 152 ⌀ | file stringlengths 15 239 | code stringlengths 0 58.4M | file_length int64 0 58.4M | avg_line_length float64 0 1.81M | max_line_length int64 0 12.7M | extension_type stringclasses 364
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FMM3D | FMM3D-master/test/Helmholtz/run_helmtest.sh | rm -rf print_testres.txt
./int2-test-helmrouts3d
./int2-test-hfmm3d
./int2-test-hfmm3d-scale
./int2-test-hfmm3d-vec
./int2-test-hfmm3d-mps
mv print_testres.txt ../../print_testreshelm.txt
rm -rf fort.13
| 203 | 21.666667 | 48 | sh |
FMM3D | FMM3D-master/test/Helmholtz/run_helmtest_ext.sh | rm -rf print_testres.txt
./int2-test-helmrouts3d
./int2-test-hfmm3d
./int2-test-hfmm3d-zkbig
./int2-test-hfmm3d-scale
./int2-test-hfmm3d-vec
./int2-test-hfmm3d-mps
mv print_testres.txt ../../print_testreshelm.txt
rm -rf fort.13
| 228 | 21.9 | 48 | sh |
FMM3D | FMM3D-master/test/Helmholtz/test_helmrouts3d.f | c
c TESTING SUITE FOR HELMHOLTZ SUBROUTINE LIBRARY: Mar 20, 2019
c
c
c
c Sources at S, Targets at T.
c
c h3dformmp forms expansion about c0
c h3dmpeval evaluates expansion at T
c h3dmpmp shifts expansion to c1
c h3dmploc converts to local about y1
c ... | 8,958 | 25.505917 | 71 | f |
FMM3D | FMM3D-master/test/Helmholtz/test_hfmm3d.f | implicit none
integer ns,nt
double precision, allocatable :: source(:,:),targ(:,:)
double complex, allocatable :: charge(:)
double complex, allocatable :: dipvec(:,:)
double complex, allocatable :: pot(:),pottarg(:)
double complex, allocatable :: grad(:,:),gradtarg(:,:)
... | 21,853 | 24.801653 | 67 | f |
FMM3D | FMM3D-master/test/Helmholtz/test_hfmm3d_adjoint.f90 | program test_hfmm3d_adjoint
implicit double precision (a-h,o-z)
double precision :: center0(3), center1(3)
double precision :: xnodes(10000), wts(10000)
double complex :: zk, ima, zrat, zrat1
double complex, allocatable :: mpole0(:,:,:), mpole1(:,:,:)
double complex, allocatable :: mpmpmat(:,:,:,:)
... | 8,908 | 21.497475 | 73 | f90 |
FMM3D | FMM3D-master/test/Helmholtz/test_hfmm3d_big.f | implicit none
integer ns
double precision, allocatable :: source(:,:)
double complex, allocatable :: charge(:)
double complex, allocatable :: pot(:)
double complex, allocatable :: potex(:)
double precision eps
double complex eye,zk
integer i,j,k
integer ntest... | 1,886 | 17.5 | 65 | f |
FMM3D | FMM3D-master/test/Helmholtz/test_hfmm3d_mps.f90 | program test_hfmm3d_mp2loc
implicit double precision (a-h,o-z)
character(len=72) str1
integer :: ns, nt, nc
integer :: i,j,k,ntest,nd,idim
integer :: ifcharge,ifdipole,ifpgh,ifpghtarg
integer :: ipass(18),len1,ntests,isum
integer, allocatable :: nterms(:), impole(:)
double precision :: eps, err... | 10,539 | 21.715517 | 70 | f90 |
FMM3D | FMM3D-master/test/Helmholtz/test_hfmm3d_scale.f | implicit real *8 (a-h,o-z)
complex *16 z1,z2,zk,ima
data ima/(0.0d0,1.0d0)/
done = 1
pi = atan(done)*4
ntest = 6
z1 = 8 + ima*0.2d0
rsc = 1.0d10
zk = z1*2*pi/rsc
call test_hfmm3d_scale(rsc,zk,i1)
rsc = 1.0d-9
zk = z1*2*pi/rsc
call test_h... | 3,624 | 20.449704 | 68 | f |
FMM3D | FMM3D-master/test/Helmholtz/test_hfmm3d_vec.f | implicit none
integer ns,nt
double precision, allocatable :: source(:,:),targ(:,:)
double complex, allocatable :: charge(:,:)
double complex, allocatable :: dipvec(:,:,:)
double complex, allocatable :: pot(:,:),pottarg(:,:)
double complex, allocatable :: grad(:,:,:),gradtarg(:,... | 22,810 | 25.340647 | 71 | f |
FMM3D | FMM3D-master/test/Helmholtz/test_hfmm3d_zkbig.f | implicit real *8 (a-h,o-z)
integer ntests,nsuccess
complex *16 zk,ima
data ima/(0.0d0,1.0d0)/
done = 1
pi = atan(done)*4
zk = 300.0d0
call test_helm_zkbig(zk,i1)
zk = 300.0d0*ima
call test_helm_zkbig(zk,i2)
zk = 12*pi*ima*4
call test_helm_zkbi... | 3,256 | 19.35625 | 68 | f |
FMM3D | FMM3D-master/test/Helmholtz/test_pwrep_hfmm3d.f | implicit none
integer ns,nt
double precision, allocatable :: source(:,:)
double complex, allocatable :: charge(:)
double complex, allocatable :: pot(:),potex(:)
double precision eps(5)
double complex eye,zk,rkmin,rkmax
double complex, allocatable :: zks(:)
integer ... | 2,816 | 21.357143 | 69 | f |
FMM3D | FMM3D-master/test/Laplace/run_laptest.sh | rm -rf print_testres.txt
./int2-test-laprouts3d
./int2-test-lfmm3d
./int2-test-lfmm3d-scale
./int2-test-lfmm3d-vec
mv print_testres.txt ../../print_testreslap.txt
rm -rf fort.13
| 178 | 21.375 | 47 | sh |
FMM3D | FMM3D-master/test/Laplace/test_laprouts3d.f | c
c TESTING SUITE FOR Laplace SUBROUTINE LIBRARY: Mar 20, 2019
c
c
c
c Sources at S, Targets at T.
c
c l3dformmp forms expansion about c0
c l3dmpeval evaluates expansion at T
c l3dmpmp shifts expansion to c1
c l3dmploc converts to local about y1
c ... | 12,489 | 25.860215 | 71 | f |
FMM3D | FMM3D-master/test/Laplace/test_lfmm3d.f | implicit none
integer ns,nt
double precision, allocatable :: source(:,:),targ(:,:)
double precision, allocatable :: charge(:)
double precision, allocatable :: dipvec(:,:)
double precision, allocatable :: pot(:),pottarg(:)
double precision, allocatable :: grad(:,:),gradtarg(:,:)... | 32,503 | 25.708299 | 71 | f |
FMM3D | FMM3D-master/test/Laplace/test_lfmm3d_big.f | implicit none
integer ns
double precision, allocatable :: source(:,:)
double precision, allocatable :: charge(:)
double precision, allocatable :: pot(:)
double precision, allocatable :: potex(:)
double precision eps
integer i,j,k
integer ntest,nd
double preci... | 1,868 | 17.69 | 62 | f |
FMM3D | FMM3D-master/test/Laplace/test_lfmm3d_scale.f | implicit real *8 (a-h,o-z)
done = 1
pi = atan(done)*4
ntest = 2
rsc = 1.0d10
call test_lfmm3d_scale(rsc,i1)
rsc = 1.0d-9
call test_lfmm3d_scale(rsc,i2)
nsuccess = i1+i2
open(unit=33,file='print_testres.txt',access='append')
write(33,'(a,i1,a,i1,a)'... | 2,911 | 19.652482 | 68 | f |
FMM3D | FMM3D-master/test/Laplace/test_lfmm3d_vec.f | implicit none
integer ns,nt
double precision, allocatable :: source(:,:),targ(:,:)
double precision, allocatable :: charge(:,:)
double precision, allocatable :: dipvec(:,:,:)
double precision, allocatable :: pot(:,:),pottarg(:,:)
double precision, allocatable :: grad(:,:,:),gra... | 33,900 | 26.405821 | 72 | f |
FMM3D | FMM3D-master/test/Maxwell/run_emtest.sh | rm -rf print_testres.txt
./int2-test-emfmm3d
mv print_testres.txt ../../print_testresem.txt
rm -rf fort.13
| 107 | 20.6 | 46 | sh |
FMM3D | FMM3D-master/test/Maxwell/test_emfmm3d.f | implicit real *8 (a-h,o-z)
integer ns,nt
double complex zk
double precision, allocatable :: sources(:,:),targs(:,:)
double complex, allocatable :: a_vect(:,:,:),lambda(:,:)
double complex, allocatable :: b_vect(:,:,:)
double complex, allocatable :: E(:,:,:),divE(:,:),curlE(:,:,... | 12,250 | 22.514395 | 71 | f |
FMM3D | FMM3D-master/test/Stokes/run_stoktest.sh | rm -rf print_testres.txt
./int2-test-stokkernels
./int2-test-stfmm3d
mv print_testres.txt ../../print_testresstok.txt
rm -rf fort.13
| 133 | 21.333333 | 48 | sh |
FMM3D | FMM3D-master/test/Stokes/test_stfmm3d.f | c
c TESTING SUITE FOR STOKES FMM: June 18th, 2020
c
c
c$ use omp_lib
implicit real *8 (a-h,o-z)
real *8, allocatable :: pot(:,:), pre(:), grad(:,:,:)
real *8, allocatable :: source(:,:), targ(:,:)
real *8, allocatable :: pot2(:,:), pre2(:), grad2(:,:,:)
real *8, allo... | 6,401 | 24.505976 | 72 | f |
FMM3D | FMM3D-master/test/Stokes/test_stokkernels.f | c
c TESTING SUITE FOR STOKES KERNELS: June 18th, 2020
c
c
implicit real *8 (a-h,o-z)
real *8 ztrg(3),source(3,20),targ(3,20),targ2(3,20)
real *8 errgrad(3,20), pert(3), dmu(3), dnu(3)
real *8, allocatable :: pot(:,:), pre(:), grad(:,:,:)
real *8, allocatable :: pot2(:,:), pre2... | 13,611 | 26.007937 | 71 | f |
FMM3D | FMM3D-master/vec-kernels/mload.sh | module purge
module load modules-nix
module load nix/gcc
module load intel/compiler
module load intel/mkl
| 106 | 16.833333 | 26 | sh |
FMM3D | FMM3D-master/vec-kernels/include/kernels.f90 | interface
subroutine helm3d_f(nd, zk, sources, charge, ns, ztarg, nt, pot, thresh) !bind(C, name="helm3d_f_")
implicit none
integer *4, intent(in) :: nd
complex *8, intent(in) :: zk
real *8, intent(in) :: sources(*)
complex *8, intent(in) :: charge(*)
integer *4, intent(in) :: ns
real ... | 4,949 | 34.611511 | 123 | f90 |
FMM3D | FMM3D-master/vec-kernels/include/kernels.h | #ifndef _KERNELS_H_
#define _KERNELS_H_
#include <stdint.h>
#ifdef __cplusplus
extern "C" {
#endif
void h3ddirectcp_new_cpp_(const int32_t* nd, const double* zk, const double* sources, const double* charge, const int32_t* ns, const double* ztarg, const int32_t* nt, double* pot, const double* thresh);
void h3ddirect... | 7,265 | 85.5 | 249 | h |
FMM3D | FMM3D-master/vec-kernels/include/sctl.hpp | // Scientific Computing Template Library
#ifndef _SCTL_HPP_
#define _SCTL_HPP_
#include <sctl/common.hpp>
// Import PVFMM preprocessor macro definitions
#ifdef SCTL_HAVE_PVFMM
#ifndef SCTL_HAVE_MPI
#define SCTL_HAVE_MPI
#endif
#include "pvfmm_config.h"
#if defined(PVFMM_QUAD_T) && !defined(SCTL_QUAD_T)
#define SCTL_... | 1,823 | 19.965517 | 70 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/template-kernels.hpp | #ifndef _VEC_KERNELS_HPP_
#define _VEC_KERNELS_HPP_
#define NDEBUG
#include <sctl.hpp>
template <class Real, class VecType, sctl::Integer DIM, sctl::Integer KDIM0, sctl::Integer KDIM1, sctl::Integer SCDIM, class uKernel, sctl::Integer digits> struct uKerHelper {
template <class CtxType> static inline void Eval(VecT... | 126,431 | 40.049351 | 393 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/blas.h | /* Kernel Independent Fast Multipole Method
Copyright (C) 2004 Lexing Ying, New York University
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2, or (at your option)
any later vers... | 1,699 | 41.5 | 228 | h |
FMM3D | FMM3D-master/vec-kernels/include/sctl/boundary_integral.hpp | #ifndef _SCTL_BOUNDARY_INTEGRAL_HPP_
#define _SCTL_BOUNDARY_INTEGRAL_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(comm.hpp)
#include SCTL_INCLUDE(mem_mgr.hpp)
#include SCTL_INCLUDE(vector.hpp)
#include <map>
#include <set>
namespace SCTL_NAMESPACE {
template <class ValueType> class Matrix;
template <cl... | 11,403 | 39.15493 | 311 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/boundary_quadrature.hpp | #ifndef _SCTL_BOUNDARY_QUADRATURE_HPP_
#define _SCTL_BOUNDARY_QUADRATURE_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(kernel_functions.hpp)
#include SCTL_INCLUDE(tree.hpp)
#include SCTL_INCLUDE(cheb_utils.hpp)
#include SCTL_INCLUDE(fmm-wrapper.hpp)
#include SCTL_INCLUDE(tensor.hpp)
#include SCTL_INCLUDE(profi... | 71,395 | 38.686492 | 348 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/cheb_utils.hpp | #ifndef _SCTL_CHEB_UTILS_HPP_
#define _SCTL_CHEB_UTILS_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(matrix.hpp)
#include SCTL_INCLUDE(math_utils.hpp)
#include SCTL_INCLUDE(legendre_rule.hpp)
#include <type_traits>
#include <functional>
#include <algorithm>
namespace SCTL_NAMESPACE {
template <class ValueTy... | 52,192 | 35.885512 | 236 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/comm.hpp | #ifndef _SCTL_COMM_HPP_
#define _SCTL_COMM_HPP_
#include <sctl/common.hpp>
#include <map>
#include <stack>
#ifdef SCTL_HAVE_MPI
#include <mpi.h>
#endif
#ifdef SCTL_HAVE_PETSC
#include <petscsys.h>
#endif
namespace SCTL_NAMESPACE {
template <class ValueType> class Vector;
class Comm {
public:
enum class CommOp ... | 6,513 | 26.719149 | 250 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/common.hpp | #ifndef _SCTL_COMMON_HPP_
#define _SCTL_COMMON_HPP_
#ifndef SCTL_NAMESPACE
#define SCTL_NAMESPACE sctl
#endif
#define SCTL_QUOTEME(x) SCTL_QUOTEME_1(x)
#define SCTL_QUOTEME_1(x) #x
#define SCTL_INCLUDE(x) SCTL_QUOTEME(SCTL_NAMESPACE/x)
// Profiling parameters
#ifndef SCTL_PROFILE
#define SCTL_PROFILE -1 // Granularit... | 2,837 | 31.62069 | 113 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/fft_wrapper.hpp | #ifndef _SCTL_FFT_WRAPPER_
#define _SCTL_FFT_WRAPPER_
#include <cmath>
#include <cassert>
#include <cstdlib>
#include <vector>
#if defined(SCTL_HAVE_FFTW) || defined(SCTL_HAVE_FFTWF)
#include <fftw3.h>
#ifdef SCTL_FFTW3_MKL
#include <fftw3_mkl.h>
#endif
#endif
#include <sctl/common.hpp>
#include SCTL_INCLUDE(matrix.h... | 27,015 | 35.508108 | 238 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/fmm-wrapper.hpp | #ifndef _SCTL_FMM_WRAPPER_HPP_
#define _SCTL_FMM_WRAPPER_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(comm.hpp)
#include SCTL_INCLUDE(mem_mgr.hpp)
#include <map>
#include <string>
#ifdef SCTL_HAVE_PVFMM
namespace pvfmm {
template <class Real> struct Kernel;
template <class Real> class MPI_Node;
templa... | 6,616 | 39.347561 | 202 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/intrin-wrapper.hpp | #ifndef _SCTL_INTRIN_WRAPPER_HPP_
#define _SCTL_INTRIN_WRAPPER_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(math_utils.hpp)
#ifdef __SSE__
#include <xmmintrin.h>
#endif
#ifdef __SSE2__
#include <emmintrin.h>
#endif
#ifdef __SSE3__
#include <pmmintrin.h>
#endif
#ifdef __SSE4_2__
#include <smmintrin.h>
#endif
... | 174,921 | 57.268488 | 1,279 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/kernel_functions.hpp | #ifndef _SCTL_KERNEL_FUNCTIONS_HPP_
#define _SCTL_KERNEL_FUNCTIONS_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(vec.hpp)
#include SCTL_INCLUDE(mem_mgr.hpp)
namespace SCTL_NAMESPACE {
template <class ValueType> class Matrix;
template <class ValueType> class Vector;
template <class uKernel, Integer KDIM0, In... | 23,393 | 44.337209 | 235 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/lapack.h | /* Kernel Independent Fast Multipole Method
Copyright (C) 2004 Lexing Ying, New York University
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2, or (at your option)
any later vers... | 2,026 | 44.044444 | 215 | h |
FMM3D | FMM3D-master/vec-kernels/include/sctl/legendre_rule.hpp | #ifndef _SCTL_LEGENDRE_RULE_HPP_
#define _SCTL_LEGENDRE_RULE_HPP_
# include <cstdlib>
# include <cmath>
# include <iostream>
# include <fstream>
# include <iomanip>
# include <ctime>
# include <cstring>
# include <cassert>
namespace SCTL_NAMESPACE {
void cdgqf(int nt, int kind, double alpha, double beta, double t[],... | 34,709 | 22.279678 | 161 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/mat_utils.hpp | #ifndef _SCTL_MAT_UTILS_
#define _SCTL_MAT_UTILS_
#include <sctl/common.hpp>
namespace SCTL_NAMESPACE {
namespace mat {
template <class ValueType> void gemm(char TransA, char TransB, int M, int N, int K, ValueType alpha, Iterator<ValueType> A, int lda, Iterator<ValueType> B, int ldb, ValueType beta, Iterator<ValueTy... | 1,175 | 42.555556 | 250 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/math_utils.hpp | #ifndef _SCTL_MATH_UTILS_
#define _SCTL_MATH_UTILS_
#include <sctl/common.hpp>
#include <cmath>
#include <ostream>
namespace SCTL_NAMESPACE {
template <class Real> inline constexpr Integer significant_bits();
template <class Real> inline constexpr Real machine_eps();
template <class Real> Real atoreal(const char*... | 4,950 | 40.605042 | 113 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/matrix.hpp | #ifndef _SCTL_MATRIX_HPP_
#define _SCTL_MATRIX_HPP_
#include <cstdint>
#include <cstdlib>
#include <sctl/common.hpp>
#include SCTL_INCLUDE(vector.hpp)
#include SCTL_INCLUDE(mem_mgr.hpp)
namespace SCTL_NAMESPACE {
template <class ValueType> class Vector;
template <class ValueType> class Permutation;
template <class... | 5,223 | 27.703297 | 127 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/mem_mgr.hpp | // TODO: Implement fast stack allocation.
#ifndef _SCTL_MEM_MGR_HPP_
#define _SCTL_MEM_MGR_HPP_
//#include <mutex>
#include <sctl/common.hpp>
#include <omp.h>
#include <typeinfo>
#include <cstdlib>
#include <cstdint>
#include <cassert>
#include <vector>
#include <stack>
#include <map>
#include <set>
namespace SCTL_... | 13,819 | 30.05618 | 150 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/morton.hpp | #ifndef _SCTL_MORTON_
#define _SCTL_MORTON_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(math_utils.hpp)
#include <cstdint>
#ifndef SCTL_MAX_DEPTH
#define SCTL_MAX_DEPTH 15
#endif
namespace SCTL_NAMESPACE {
template <class ValueType> class Vector;
template <Integer DIM = 3> class Morton {
public:
#if SCTL_... | 6,343 | 24.788618 | 125 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/ode-solver.hpp | #ifndef _SCTL_ODE_SOLVER_
#define _SCTL_ODE_SOLVER_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(math_utils.hpp)
#include <functional>
namespace SCTL_NAMESPACE {
template <class ValueType> class Vector;
template <class ValueType> class Matrix;
template <class Real> class SDC {
public:
using Fn = std::fu... | 3,528 | 29.686957 | 199 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/ompUtils.hpp | #ifndef _SCTL_OMP_UTILS_H_
#define _SCTL_OMP_UTILS_H_
#include <sctl/common.hpp>
#include <iterator>
namespace SCTL_NAMESPACE {
namespace omp_par {
template <class ConstIter, class Iter, class Int, class StrictWeakOrdering> void merge(ConstIter A_, ConstIter A_last, ConstIter B_, ConstIter B_last, Iter C_, Int p, S... | 845 | 30.333333 | 192 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/parallel_solver.hpp | #ifndef _SCTL_PARALLEL_SOLVER_HPP_
#define _SCTL_PARALLEL_SOLVER_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(comm.hpp)
#include SCTL_INCLUDE(mem_mgr.hpp)
#include SCTL_INCLUDE(math_utils.hpp)
#include <functional>
namespace SCTL_NAMESPACE {
template <class ValueType> class Vector;
template <class ValueTyp... | 11,604 | 32.157143 | 236 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/profile.hpp | #ifndef _SCTL_PROFILE_HPP_
#define _SCTL_PROFILE_HPP_
#include <sctl/common.hpp>
#include <string>
#include <vector>
#include <stack>
#ifndef SCTL_PROFILE
#define SCTL_PROFILE -1
#endif
namespace SCTL_NAMESPACE {
class Comm;
class Profile {
public:
static Long Add_MEM(Long inc);
static Long Add_FLOP(Long in... | 1,311 | 18.014493 | 105 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/quadrule.hpp | #ifndef _SCTL_QUADRULE_HPP_
#define _SCTL_QUADRULE_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(matrix.hpp)
#include SCTL_INCLUDE(math_utils.hpp)
#include SCTL_INCLUDE(legendre_rule.hpp)
#include <algorithm>
namespace SCTL_NAMESPACE {
template <class Real> class ChebQuadRule { // p(x)
public:
t... | 24,048 | 38.42459 | 327 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/slender_element.hpp | #ifndef _SCTL_SLENDER_ELEMENT_HPP_
#define _SCTL_SLENDER_ELEMENT_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(mem_mgr.hpp)
#include SCTL_INCLUDE(vector.hpp)
namespace SCTL_NAMESPACE {
class Comm;
struct VTUData;
template <class Real> class FFT;
template <class ValueType> class Vector;
template <cl... | 8,568 | 35.776824 | 234 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/sph_harm.hpp | #ifndef _SCTL_SPH_HARM_HPP_
#define _SCTL_SPH_HARM_HPP_
#define SCTL_SHMAXDEG 1024
#include <sctl/common.hpp>
#include SCTL_INCLUDE(math_utils.hpp)
#include SCTL_INCLUDE(mem_mgr.hpp)
#include <vector>
namespace SCTL_NAMESPACE {
class Comm;
template <class ValueType> class Vector;
template <class ValueType> class M... | 21,976 | 41.101533 | 266 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/stacktrace.h | #ifndef _SCTL_STACKTRACE_H_
#define _SCTL_STACKTRACE_H_
#include <sctl/common.hpp>
#include <unistd.h>
#include <signal.h>
#include <stdio.h>
#include <stdlib.h>
#include <execinfo.h>
#include <cxxabi.h>
#ifdef __APPLE__
#include <mach-o/dyld.h>
#endif
namespace SCTL_NAMESPACE {
inline void print_stacktrace(FILE* o... | 3,186 | 23.898438 | 100 | h |
FMM3D | FMM3D-master/vec-kernels/include/sctl/tensor.hpp | #ifndef _SCTL_TENSOR_HPP_
#define _SCTL_TENSOR_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(mem_mgr.hpp)
#include SCTL_INCLUDE(math_utils.hpp)
#include <iostream>
#include <iomanip>
namespace SCTL_NAMESPACE {
template <class ValueType, bool own_data, Long... Args> class Tensor {
template <Long k> stat... | 7,617 | 28.187739 | 154 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/tree.hpp | #ifndef _SCTL_TREE_
#define _SCTL_TREE_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(comm.hpp)
#include SCTL_INCLUDE(morton.hpp)
#include SCTL_INCLUDE(vtudata.hpp)
#include SCTL_INCLUDE(ompUtils.hpp)
#include <string>
#include <vector>
#include <algorithm>
namespace SCTL_NAMESPACE {
template <Integer DIM> class... | 5,002 | 28.60355 | 126 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/vec-test.hpp | #ifndef _SCTL_VEC_TEST_HPP_
#define _SCTL_VEC_TEST_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(vec.hpp)
#include SCTL_INCLUDE(vector.hpp)
#include <cassert>
#include <cstdint>
#include <ostream>
namespace SCTL_NAMESPACE {
// Verify Vec class
template <class ValueType = double, Integer N = 1> class Vec... | 15,707 | 34.7 | 192 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/vec.hpp | #ifndef _SCTL_VEC_WRAPPER_HPP_
#define _SCTL_VEC_WRAPPER_HPP_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(intrin-wrapper.hpp)
#include <cassert>
#include <cstdint>
#include <ostream>
namespace SCTL_NAMESPACE {
#if defined(__AVX512__) || defined(__AVX512F__)
static_assert(SCTL_ALIGN_BYTES >= 64, "Insufficie... | 10,405 | 33.571429 | 137 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/vector.hpp | #ifndef _SCTL_VECTOR_HPP_
#define _SCTL_VECTOR_HPP_
#include <sctl/common.hpp>
#include <vector>
#include <cstdlib>
#include <cstdint>
#include <initializer_list>
namespace SCTL_NAMESPACE {
template <class ValueType> Iterator<ValueType> NullIterator();
template <class ValueType> class Vector {
public:
typedef V... | 3,249 | 23.074074 | 107 | hpp |
FMM3D | FMM3D-master/vec-kernels/include/sctl/vtudata.hpp | #ifndef _SCTL_VTUDATA_
#define _SCTL_VTUDATA_
#include <sctl/common.hpp>
#include SCTL_INCLUDE(comm.hpp)
#include SCTL_INCLUDE(vector.hpp)
#include SCTL_INCLUDE(mem_mgr.hpp)
namespace SCTL_NAMESPACE {
class Comm;
template <class ValueType> class Vector;
template <class ValueType> class Matrix;
struct VTUData {
ty... | 1,048 | 24.585366 | 169 | hpp |
FMM3D | FMM3D-master/vec-kernels/src/libkernels.cpp | #include <kernels.h>
#include <template-kernels.hpp>
#define VECDIM 4
#ifdef __AVX512F__
#undef VECDIM
#define VECDIM 8
#endif
#ifdef __cplusplus
extern "C" {
#endif
void h3ddirectcp_new_cpp_(const int32_t* nd, const double* zk, const double* sources, const double* charge, const int32_t* ns, const double* ztarg, con... | 10,759 | 66.672956 | 250 | cpp |
FMM3D | FMM3D-master/vec-kernels/src/test-cpp.cpp | #include <sctl.hpp>
#include <kernels.h>
double mydrand() { return (double)rand()/RAND_MAX; }
int main() {
constexpr int32_t COORD_DIM = 3;
omp_set_num_threads(1);
std::cout<<"num of max omp threads: "<<omp_get_max_threads()<<"\n";
double zk[2] = {1,1};
double thresh = 1e-12;
int32_t Ns = 1000, Nt = 100... | 1,295 | 26.574468 | 115 | cpp |
FMM3D | FMM3D-master/vec-kernels/src/test-fortran.f90 | program main
implicit none
integer*4 :: nd, Ns, Nt
nd = 1
Ns = 1000
Nt = 1000
call test(nd, Ns, Nt)
end
subroutine test(nd, Ns, Nt)
use iso_c_binding
implicit none
include 'kernels.f90'
integer*4 :: i, nd, Ns, Nt
real*8 :: Xs(Ns*3), Xt(Nt*3), thresh
complex*16 :: zk, Vs(Ns*nd), Vt(Nt*nd), Vt_r... | 1,066 | 18.053571 | 86 | f90 |
NRI | NRI-master/README.md | # Neural relational inference for interacting systems
This repository contains the official PyTorch implementation of:
**Neural relational inference for interacting systems.**
Thomas Kipf*, Ethan Fetaya*, Kuan-Chieh Wang, Max Welling, Richard Zemel.
https://arxiv.org/abs/1802.04687 (*: equal contribution)
![Neu... | 2,887 | 44.125 | 950 | md |
NRI | NRI-master/__init__.py | 0 | 0 | 0 | py | |
NRI | NRI-master/lstm_baseline.py | from __future__ import division
from __future__ import print_function
import time
import argparse
import pickle
import os
import datetime
import torch.optim as optim
from torch.optim import lr_scheduler
from utils import *
from modules import *
parser = argparse.ArgumentParser()
parser.add_argument('--no-cuda', act... | 15,051 | 34.923628 | 88 | py |
NRI | NRI-master/modules.py | import torch
import torch.nn as nn
import torch.nn.functional as F
import math
from torch.autograd import Variable
from utils import my_softmax, get_offdiag_indices, gumbel_softmax
_EPS = 1e-10
class MLP(nn.Module):
"""Two-layer fully-connected ELU net with batch norm."""
def __init__(self, n_in, n_hid, n_... | 24,213 | 36.138037 | 80 | py |
NRI | NRI-master/train.py | from __future__ import division
from __future__ import print_function
import time
import argparse
import pickle
import os
import datetime
import torch.optim as optim
from torch.optim import lr_scheduler
from utils import *
from modules import *
parser = argparse.ArgumentParser()
parser.add_argument('--no-cuda', act... | 15,858 | 38.158025 | 94 | py |
NRI | NRI-master/train_dec.py | from __future__ import division
from __future__ import print_function
import time
import argparse
import pickle
import os
import datetime
import torch.optim as optim
from torch.optim import lr_scheduler
from utils import *
from modules import *
parser = argparse.ArgumentParser()
parser.add_argument('--no-cuda', act... | 15,025 | 38.43832 | 88 | py |
NRI | NRI-master/train_enc.py | from __future__ import division
from __future__ import print_function
import time
import argparse
import pickle
import os
import torch.optim as optim
from torch.optim import lr_scheduler
from utils import *
from modules import *
parser = argparse.ArgumentParser()
parser.add_argument('--no-cuda', action='store_true'... | 9,536 | 36.253906 | 88 | py |
NRI | NRI-master/utils.py | import numpy as np
import torch
from torch.utils.data.dataset import TensorDataset
from torch.utils.data import DataLoader
import torch.nn.functional as F
from torch.autograd import Variable
def my_softmax(input, axis=1):
trans_input = input.transpose(axis, 0).contiguous()
soft_max_1d = F.softmax(trans_input)... | 18,169 | 37.012552 | 118 | py |
NRI | NRI-master/data/__init__.py | 0 | 0 | 0 | py | |
NRI | NRI-master/data/generate_dataset.py | from synthetic_sim import ChargedParticlesSim, SpringSim
import time
import numpy as np
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('--simulation', type=str, default='springs',
help='What simulation to generate.')
parser.add_argument('--num-train', type=int, default=50000... | 3,551 | 38.032967 | 77 | py |
NRI | NRI-master/data/synthetic_sim.py | import numpy as np
import matplotlib.pyplot as plt
import time
class SpringSim(object):
def __init__(self, n_balls=5, box_size=5., loc_std=.5, vel_norm=.5,
interaction_strength=.1, noise_var=0.):
self.n_balls = n_balls
self.box_size = box_size
self.loc_std = loc_std
... | 12,383 | 38.948387 | 80 | py |
qiskit-metapackage | qiskit-metapackage-master/.mergify.yml | queue_rules:
- name: automerge
conditions: [] # No additional rules, because branch-protection does them.
pull_request_rules:
- name: automatic merge on CI success and review
conditions:
- base=master
- "#approved-reviews-by>=1"
- label=automerge
- label!=on hold
# GitHub bra... | 1,116 | 30.027778 | 79 | yml |
qiskit-metapackage | qiskit-metapackage-master/CITATION.md | See https://github.com/Qiskit/qiskit-terra/blob/main/CITATION.bib
| 66 | 32.5 | 65 | md |
qiskit-metapackage | qiskit-metapackage-master/CODE_OF_CONDUCT.md | # Code of Conduct
## Our Pledge
The Qiskit Community is dedicated to our values of treating every individual
with respect and dignity. In the interest of fostering an open and welcoming
environment, all participants, including attendees, speakers, sponsors,
volunteers, online contributors, and IBM employees are expec... | 6,370 | 54.4 | 216 | md |
qiskit-metapackage | qiskit-metapackage-master/CONTRIBUTING.md | # Contributing
The documentation and benchmarking of Qiskit is contained in this repository. To contribute
to this project or any of the elements of qiskit we recommend you start by reading the
[contributing guide](https://qiskit.org/documentation/contributing_to_qiskit.html).
## Contributor License Agreement
Before... | 1,229 | 46.307692 | 91 | md |
qiskit-metapackage | qiskit-metapackage-master/README.md | 
[](https://opensource.org/licenses/Apache-2.0)
 Copyright IBM 2018.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 3,230 | 26.615385 | 83 | py |
qiskit-metapackage | qiskit-metapackage-master/.github/PULL_REQUEST_TEMPLATE.md | <!--
⚠️ If you do not respect this template, your pull request will be closed.
⚠️ Your pull request title should be short detailed and understandable for all.
⚠️ Also, please add it in the CHANGELOG file under Unreleased section.
⚠️ If your pull request fixes an open issue, please link to the issue.
✅ I have added the... | 484 | 24.526316 | 79 | md |
qiskit-metapackage | qiskit-metapackage-master/.github/ISSUE_TEMPLATE/bug_report.md | ---
name: "\U0001F41B Bug report"
about: "Create a report to help us improve \U0001F914."
title: ''
labels: bug
assignees: ''
---
<!-- ⚠️ If you do not respect this template, your issue will be closed -->
<!-- ⚠️ Make sure to browse the opened and closed issues -->
### Informations
- **Qiskit version**:
- **Python ... | 493 | 14.4375 | 74 | md |
qiskit-metapackage | qiskit-metapackage-master/.github/ISSUE_TEMPLATE/documentation.md | ---
name: Documentation
about: 'Create an issue for documentation'
title: ''
labels: documentation
assignees: ''
---
## Did you find a doc bug or broken link that needs to be fixed?
- What is the file name(s) where you found the bug?
- What is the current text that needs to be fixed or removed? (You can copy and pa... | 655 | 23.296296 | 86 | md |
qiskit-metapackage | qiskit-metapackage-master/.github/ISSUE_TEMPLATE/feature_request.md | ---
name: "\U0001F680 Feature request"
about: "Suggest an idea for this project \U0001F4A1!"
title: ''
labels: enhancement
assignees: ''
---
<!-- ⚠️ If you do not respect this template, your issue will be closed -->
<!-- ⚠️ Make sure to browse the opened and closed issues to confirm this idea does not exist. -->
###... | 352 | 24.214286 | 97 | md |
qiskit-metapackage | qiskit-metapackage-master/.github/workflows/docs.yml | name: Docs Publish
on:
workflow_dispatch:
push:
branches: [ master ]
jobs:
deploy:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.8'
- name: Insta... | 1,552 | 28.301887 | 85 | yml |
qiskit-metapackage | qiskit-metapackage-master/.github/workflows/docs_tag.yml | name: Stable Docs Publish
on:
push:
tags:
- '*'
jobs:
deploy:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.8'
- name: Install dependencies
... | 795 | 24.677419 | 66 | yml |
qiskit-metapackage | qiskit-metapackage-master/.github/workflows/main.yml | name: Tests
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
tests:
name: tests-python${{ matrix.python-version }}-${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
python-version: [3.7, 3.8, 3.9, "3.10"]
os: ["ubuntu-latest"]
steps:
... | 3,041 | 28.823529 | 177 | yml |
qiskit-metapackage | qiskit-metapackage-master/.github/workflows/release.yml | name: Publish PyPI
on:
push:
tags:
- '*'
jobs:
wheel-build:
name: Build and Publish Release Artifacts
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.8'
- name: Install depen... | 698 | 21.548387 | 53 | yml |
qiskit-metapackage | qiskit-metapackage-master/docs/README.md | # Qiskit Documentation
Please refer to [Contributing to Documentation](https://qiskit.org/documentation/contributing_to_qiskit.html#contributing-to-documentation).
| 165 | 40.5 | 140 | md |
qiskit-metapackage | qiskit-metapackage-master/docs/conf.py | # This code is part of Qiskit.
#
# (C) Copyright IBM 2018.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modifications or derivative wo... | 7,727 | 32.6 | 100 | py |
qiskit-metapackage | qiskit-metapackage-master/docs/custom_extensions.py | # This code is part of Qiskit.
#
# (C) Copyright IBM 2023.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modifications or derivative wo... | 2,826 | 33.060241 | 93 | py |
qiskit-metapackage | qiskit-metapackage-master/docs/versionutils.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2018.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 6,550 | 34.032086 | 97 | py |
qiskit-metapackage | qiskit-metapackage-master/test/__init__.py | 0 | 0 | 0 | py | |
qiskit-metapackage | qiskit-metapackage-master/test/base.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2018.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 4,775 | 38.147541 | 78 | py |
qiskit-metapackage | qiskit-metapackage-master/test/test_metapackage.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2018.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 765 | 26.357143 | 77 | py |
qiskit-metapackage | qiskit-metapackage-master/test/test_simulation.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2018.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 1,187 | 31.108108 | 91 | py |
qiskit-metapackage | qiskit-metapackage-master/test/benchmarks/__init__.py | 0 | 0 | 0 | py | |
qiskit-metapackage | qiskit-metapackage-master/test/benchmarks/assembler.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2019.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 1,893 | 31.655172 | 77 | py |
qiskit-metapackage | qiskit-metapackage-master/test/benchmarks/circuit_construction.py | # -*- coding: utf-8 -*
# This code is part of Qiskit.
#
# (C) Copyright IBM 2018, 2019.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any ... | 3,180 | 29.883495 | 77 | py |
qiskit-metapackage | qiskit-metapackage-master/test/benchmarks/converters.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2019.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 1,987 | 33.877193 | 78 | py |
qiskit-metapackage | qiskit-metapackage-master/test/benchmarks/import.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2019.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 857 | 30.777778 | 77 | py |
qiskit-metapackage | qiskit-metapackage-master/test/benchmarks/isometry.py | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2019.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | 1,845 | 37.458333 | 79 | py |