source stringclasses 1
value | dedup_identity stringclasses 7
values | sample stringlengths 14 17 |
|---|---|---|
ATB_0.2.incr.202408 | 0.80 | SAMEA3538795.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN03102319.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN22068664.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN02900182.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN17019772.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA2783251.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA115659125.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN12288896.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN20490140.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN13813835.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN40372503.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA6143833.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN04538630.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN37096931.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN23491895.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA2047313.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN13884684.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN07568728.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN20398710.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA1035584.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA104614388.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN15891570.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN22866747.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN14234418.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA4649801.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN28195456.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN05583818.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN33325574.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN09214429.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA1523504.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN28014052.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN34171718.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN22896047.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN11389019.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA110349011.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN15073209.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN14978681.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN07788212.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN10435945.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN15641053.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN11466880.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN25651791.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN41516361.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA3232538.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN09198941.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN29766831.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA4840621.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN41482956.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN28743425.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN15908377.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN14491225.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN28537759.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN24114923.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN11846875.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN22575565.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN27750345.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN12649272.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN17729868.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA8701165.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA3538436.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN13390152.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA2553635.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN41579288.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN37863381.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN21435184.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN32475235.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA10331087.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA3642986.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA5672402.fa |
ATB_0.2.incr.202408 | 0.80 | SAMD00030613.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA112486537.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN10134441.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA115751354.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN31365319.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN07154250.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN05900806.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN12774971.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN09071606.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN06114171.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN08946969.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN08989463.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA112856935.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA6462421.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN38331888.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA2058625.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN13472426.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN22513870.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN21521760.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN03276004.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN26725038.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN13072796.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN15084609.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN09634281.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA114782421.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA5054406.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN28095607.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN15776395.fa |
ATB_0.2.incr.202408 | 0.80 | SAMEA1560141.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN09785190.fa |
ATB_0.2.incr.202408 | 0.80 | SAMN06111694.fa |
End of preview. Expand in Data Studio
List of sample identifiers from ATB deduplicated at varying levels of identity based on nucleotide sequence using sketchlib v0.2.4.
Sketching and distance calculation conducted with below commands
sketchlib sketch -f ${infile} -o ${outpref} --k-vals 21 -s 10000 --threads 11
sketchlib dist ${outpref} -k 21 --ani --threads 11 -o ${outpref}_dists.tsv
Where infile is a set of genome inputs in the format:
GENOME000001 /path/to/GENOME000001.fasta
GENOME000002 /path/to/GENOME000002.fasta
GENOME000003 /path/to/GENOME000003.fasta
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