source
stringclasses 1
value | dedup_identity
stringclasses 7
values | sample
stringlengths 14
17
|
|---|---|---|
ATB_0.2.incr.202408
|
0.80
|
SAMEA3538795.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN03102319.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN22068664.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMN02900182.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMN17019772.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA2783251.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA115659125.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMN12288896.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN20490140.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN13813835.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN40372503.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMEA6143833.fa
|
ATB_0.2.incr.202408
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0.80
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SAMN04538630.fa
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ATB_0.2.incr.202408
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0.80
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SAMN37096931.fa
|
ATB_0.2.incr.202408
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0.80
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SAMN23491895.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMEA2047313.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN13884684.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN07568728.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN20398710.fa
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ATB_0.2.incr.202408
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0.80
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SAMEA1035584.fa
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ATB_0.2.incr.202408
|
0.80
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SAMEA104614388.fa
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ATB_0.2.incr.202408
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0.80
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SAMN15891570.fa
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ATB_0.2.incr.202408
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0.80
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SAMN22866747.fa
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ATB_0.2.incr.202408
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0.80
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SAMN14234418.fa
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ATB_0.2.incr.202408
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0.80
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SAMEA4649801.fa
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ATB_0.2.incr.202408
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0.80
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SAMN28195456.fa
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ATB_0.2.incr.202408
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0.80
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SAMN05583818.fa
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ATB_0.2.incr.202408
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0.80
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SAMN33325574.fa
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ATB_0.2.incr.202408
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0.80
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SAMN09214429.fa
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ATB_0.2.incr.202408
|
0.80
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SAMEA1523504.fa
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ATB_0.2.incr.202408
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0.80
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SAMN28014052.fa
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ATB_0.2.incr.202408
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0.80
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SAMN34171718.fa
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ATB_0.2.incr.202408
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0.80
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SAMN22896047.fa
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ATB_0.2.incr.202408
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0.80
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SAMN11389019.fa
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ATB_0.2.incr.202408
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0.80
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SAMEA110349011.fa
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ATB_0.2.incr.202408
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0.80
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SAMN15073209.fa
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ATB_0.2.incr.202408
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0.80
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SAMN14978681.fa
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ATB_0.2.incr.202408
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0.80
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SAMN07788212.fa
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ATB_0.2.incr.202408
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0.80
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SAMN10435945.fa
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ATB_0.2.incr.202408
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0.80
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SAMN15641053.fa
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ATB_0.2.incr.202408
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0.80
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SAMN11466880.fa
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ATB_0.2.incr.202408
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0.80
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SAMN25651791.fa
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ATB_0.2.incr.202408
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0.80
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SAMN41516361.fa
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ATB_0.2.incr.202408
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0.80
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SAMEA3232538.fa
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ATB_0.2.incr.202408
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0.80
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SAMN09198941.fa
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ATB_0.2.incr.202408
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0.80
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SAMN29766831.fa
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ATB_0.2.incr.202408
|
0.80
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SAMEA4840621.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN41482956.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN28743425.fa
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ATB_0.2.incr.202408
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0.80
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SAMN15908377.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN14491225.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN28537759.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN24114923.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN11846875.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN22575565.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMN27750345.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMN12649272.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMN17729868.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA8701165.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA3538436.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN13390152.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA2553635.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN41579288.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN37863381.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN21435184.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN32475235.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA10331087.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA3642986.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA5672402.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMD00030613.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA112486537.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN10134441.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMEA115751354.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN31365319.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN07154250.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN05900806.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN12774971.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN09071606.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMN06114171.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN08946969.fa
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ATB_0.2.incr.202408
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0.80
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SAMN08989463.fa
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ATB_0.2.incr.202408
|
0.80
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SAMEA112856935.fa
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ATB_0.2.incr.202408
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0.80
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SAMEA6462421.fa
|
ATB_0.2.incr.202408
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0.80
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SAMN38331888.fa
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ATB_0.2.incr.202408
|
0.80
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SAMEA2058625.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN13472426.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN22513870.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN21521760.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN03276004.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN26725038.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN13072796.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN15084609.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN09634281.fa
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ATB_0.2.incr.202408
|
0.80
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SAMEA114782421.fa
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ATB_0.2.incr.202408
|
0.80
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SAMEA5054406.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN28095607.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN15776395.fa
|
ATB_0.2.incr.202408
|
0.80
|
SAMEA1560141.fa
|
ATB_0.2.incr.202408
|
0.80
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SAMN09785190.fa
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ATB_0.2.incr.202408
|
0.80
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SAMN06111694.fa
|
End of preview. Expand
in Data Studio
List of sample identifiers from ATB deduplicated at varying levels of identity based on nucleotide sequence using sketchlib v0.2.4.
Sketching and distance calculation conducted with below commands
sketchlib sketch -f ${infile} -o ${outpref} --k-vals 21 -s 10000 --threads 11
sketchlib dist ${outpref} -k 21 --ani --threads 11 -o ${outpref}_dists.tsv
Where infile is a set of genome inputs in the format:
GENOME000001 /path/to/GENOME000001.fasta
GENOME000002 /path/to/GENOME000002.fasta
GENOME000003 /path/to/GENOME000003.fasta
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