Update README.md

README.md

@@ -2,4 +2,17 @@
 license: mit
 ---
 
-List of sample identifiers from ATB dataset, deduplicated at varying levels of identity based on nucleotide sequence.
+List of sample identifiers from [ATB](https://allthebacteria.org) deduplicated at varying levels of identity based on nucleotide sequence using [sketchlib](https://docs.rs/sketchlib/latest/sketchlib/) v0.2.4.
+
+Sketching and distance calculation conducted with below commands
+```
+sketchlib sketch -f ${infile} -o ${outpref} --k-vals 21 -s 10000 --threads 11
+sketchlib dist ${outpref} -k 21 --ani --threads 11 -o ${outpref}_dists.tsv
+```
+
+Where `infile` is a set of genome inputs in the format:
+```
+GENOME000001	/path/to/GENOME000001.fasta
+GENOME000002	/path/to/GENOME000002.fasta
+GENOME000003	/path/to/GENOME000003.fasta
+```