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mattlong/hermes | hermes/chatroom.py | Chatroom.on_presence | def on_presence(self, session, presence):
"""Handles presence stanzas"""
from_jid = presence.getFrom()
is_member = self.is_member(from_jid.getStripped())
if is_member:
member = self.get_member(from_jid.getStripped())
else:
member = None
logger.inf... | python | def on_presence(self, session, presence):
"""Handles presence stanzas"""
from_jid = presence.getFrom()
is_member = self.is_member(from_jid.getStripped())
if is_member:
member = self.get_member(from_jid.getStripped())
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member = None
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mattlong/hermes | hermes/chatroom.py | Chatroom.on_message | def on_message(self, con, event):
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nick = event.getFrom().getResource()
from_jid = event.getFrom().getStripped()
body = event.getBody()
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return
logger.debug... | python | def on_message(self, con, event):
"""Handles messge stanzas"""
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cloudmesh-cmd3/cmd3 | cmd3/plugins/activate.py | activate.activate | def activate(self):
"""method to activate all activation methods in the shell and
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"""
d = dir(self)
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if key.startswith("shell_activate_"):
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Console.ok("Shell Activate:... | python | def activate(self):
"""method to activate all activation methods in the shell and
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cloudmesh-cmd3/cmd3 | cmd3/plugins/activate.py | activate.do_help | def do_help(self, arg):
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if arg:
# XXX check arg syntax
try:
func = getattr(self, 'help_' + arg)
except AttributeError:
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doc = getattr(s... | python | def do_help(self, arg):
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if arg:
# XXX check arg syntax
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b10m/ziggo_mediabox_xl | ziggo_mediabox_xl.py | ZiggoMediaboxXL._fetch_channels | def _fetch_channels(self):
"""Retrieve Ziggo channel information."""
json = requests.get(self._channels_url).json()
self._channels = {c['channel']['code']: c['channel']['name']
for c in json['channels']} | python | def _fetch_channels(self):
"""Retrieve Ziggo channel information."""
json = requests.get(self._channels_url).json()
self._channels = {c['channel']['code']: c['channel']['name']
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b10m/ziggo_mediabox_xl | ziggo_mediabox_xl.py | ZiggoMediaboxXL.send_keys | def send_keys(self, keys):
"""Send keys to the device."""
try:
sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
sock.settimeout(self._timeout)
sock.connect((self._ip, self._port['cmd']))
# mandatory dance
version_info = sock.recv(15)
... | python | def send_keys(self, keys):
"""Send keys to the device."""
try:
sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
sock.settimeout(self._timeout)
sock.connect((self._ip, self._port['cmd']))
# mandatory dance
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mbourqui/django-echoices | echoices/fields/fields.py | make_echoicefield | def make_echoicefield(echoices, *args, klass_name=None, **kwargs):
"""
Construct a subclass of a derived `models.Field` specific to the type of the `EChoice` values.
Parameters
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echoices : subclass of EChoice
args
Passed to the derived `models.Field`
klass_name : str
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"""
Construct a subclass of a derived `models.Field` specific to the type of the `EChoice` values.
Parameters
----------
echoices : subclass of EChoice
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Passed to the derived `models.Field`
klass_name : str
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jstitch/MambuPy | MambuPy/orm/schema_dummies.py | make_dummy | def make_dummy(instance,
relations = {},
datetime_default = dt.strptime('1901-01-01','%Y-%m-%d'),
varchar_default = "",
integer_default = 0,
numeric_default = 0.0,
*args, **kwargs
):
"""Make an instance... | python | def make_dummy(instance,
relations = {},
datetime_default = dt.strptime('1901-01-01','%Y-%m-%d'),
varchar_default = "",
integer_default = 0,
numeric_default = 0.0,
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network.set_up_network | def set_up_network(
self,
genes: List[Gene],
gene_filter: bool = False,
disease_associations: Optional[Dict] = None
) -> None:
"""Set up the network.
Filter genes out if requested and add attributes to the vertices.
:param genes: A list of G... | python | def set_up_network(
self,
genes: List[Gene],
gene_filter: bool = False,
disease_associations: Optional[Dict] = None
) -> None:
"""Set up the network.
Filter genes out if requested and add attributes to the vertices.
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network.filter_genes | def filter_genes(self, relevant_entrez: list) -> None:
"""Filter out the genes that are not in list relevant_entrez.
:param list relevant_entrez: Entrez IDs of genes which are to be kept.
"""
logger.info("In filter_genes()")
irrelevant_genes = self.graph.vs.select(name_notin=rel... | python | def filter_genes(self, relevant_entrez: list) -> None:
"""Filter out the genes that are not in list relevant_entrez.
:param list relevant_entrez: Entrez IDs of genes which are to be kept.
"""
logger.info("In filter_genes()")
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network._add_vertex_attributes | def _add_vertex_attributes(self, genes: List[Gene],
disease_associations: Optional[dict] = None) -> None:
"""Add attributes to vertices.
:param genes: A list of genes containing attribute information.
"""
self._set_default_vertex_attributes()
self.... | python | def _add_vertex_attributes(self, genes: List[Gene],
disease_associations: Optional[dict] = None) -> None:
"""Add attributes to vertices.
:param genes: A list of genes containing attribute information.
"""
self._set_default_vertex_attributes()
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network._set_default_vertex_attributes | def _set_default_vertex_attributes(self) -> None:
"""Assign default values on attributes to all vertices."""
self.graph.vs["l2fc"] = 0
self.graph.vs["padj"] = 0.5
self.graph.vs["symbol"] = self.graph.vs["name"]
self.graph.vs["diff_expressed"] = False
self.graph.vs["up_reg... | python | def _set_default_vertex_attributes(self) -> None:
"""Assign default values on attributes to all vertices."""
self.graph.vs["l2fc"] = 0
self.graph.vs["padj"] = 0.5
self.graph.vs["symbol"] = self.graph.vs["name"]
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network._add_vertex_attributes_by_genes | def _add_vertex_attributes_by_genes(self, genes: List[Gene]) -> None:
"""Assign values to attributes on vertices.
:param genes: A list of Gene objects from which values will be extracted.
"""
for gene in genes:
try:
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"""Assign values to attributes on vertices.
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"""
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network._add_disease_associations | def _add_disease_associations(self, disease_associations: dict) -> None:
"""Add disease association annotation to the network.
:param disease_associations: Dictionary of disease-gene associations.
"""
if disease_associations is not None:
for target_id, disease_id_list in dis... | python | def _add_disease_associations(self, disease_associations: dict) -> None:
"""Add disease association annotation to the network.
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"""
if disease_associations is not None:
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network.get_upregulated_genes | def get_upregulated_genes(self) -> VertexSeq:
"""Get genes that are up-regulated.
:return: Up-regulated genes.
"""
up_regulated = self.graph.vs.select(self._is_upregulated_gene)
logger.info(f"No. of up-regulated genes after laying on network: {len(up_regulated)}")
return... | python | def get_upregulated_genes(self) -> VertexSeq:
"""Get genes that are up-regulated.
:return: Up-regulated genes.
"""
up_regulated = self.graph.vs.select(self._is_upregulated_gene)
logger.info(f"No. of up-regulated genes after laying on network: {len(up_regulated)}")
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network.get_downregulated_genes | def get_downregulated_genes(self) -> VertexSeq:
"""Get genes that are down-regulated.
:return: Down-regulated genes.
"""
down_regulated = self.graph.vs.select(self._is_downregulated_gene)
logger.info(f"No. of down-regulated genes after laying on network: {len(down_regulated)}")
... | python | def get_downregulated_genes(self) -> VertexSeq:
"""Get genes that are down-regulated.
:return: Down-regulated genes.
"""
down_regulated = self.graph.vs.select(self._is_downregulated_gene)
logger.info(f"No. of down-regulated genes after laying on network: {len(down_regulated)}")
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network.print_summary | def print_summary(self, heading: str) -> None:
"""Print the summary of a graph.
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"""
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network.get_differentially_expressed_genes | def get_differentially_expressed_genes(self, diff_type: str) -> VertexSeq:
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:return list: A list of differentially expressed genes.
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/model/network.py | Network.write_adj_list | def write_adj_list(self, path: str) -> None:
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"""
adj_list = self.get_adjlist()
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"""Write the network as an adjacency list to a file.
:param path: File path to write the adjacency list.
"""
adj_list = self.get_adjlist()
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rsgalloway/grit | grit/server/cherrypy/__init__.py | read_headers | def read_headers(rfile, hdict=None):
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rsgalloway/grit | grit/server/cherrypy/__init__.py | HTTPRequest.parse_request | def parse_request(self):
"""Parse the next HTTP request start-line and message-headers."""
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try:
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except MaxSizeExceeded:
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"""Parse the next HTTP request start-line and message-headers."""
self.rfile = SizeCheckWrapper(self.conn.rfile,
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try:
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rsgalloway/grit | grit/server/cherrypy/__init__.py | HTTPRequest.send_headers | def send_headers(self):
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"""
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rsgalloway/grit | grit/server/cherrypy/__init__.py | ThreadPool.start | def start(self):
"""Start the pool of threads."""
for i in range(self.min):
self._threads.append(WorkerThread(self.server))
for worker in self._threads:
worker.setName("CP Server " + worker.getName())
worker.start()
for worker in self._threads:
... | python | def start(self):
"""Start the pool of threads."""
for i in range(self.min):
self._threads.append(WorkerThread(self.server))
for worker in self._threads:
worker.setName("CP Server " + worker.getName())
worker.start()
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openvax/varlens | varlens/read_evidence/pileup_element.py | PileupElement.fields | def fields(self):
'''
Fields that should be considered for our notion of object equality.
'''
return (
self.locus, self.offset_start, self.offset_end, self.alignment_key) | python | def fields(self):
'''
Fields that should be considered for our notion of object equality.
'''
return (
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openvax/varlens | varlens/read_evidence/pileup_element.py | PileupElement.bases | def bases(self):
'''
The sequenced bases in the alignment that align to this locus in the
genome, as a string.
Empty string in the case of a deletion. String of length > 1 if there
is an insertion here.
'''
sequence = self.alignment.query_sequence
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'''
The sequenced bases in the alignment that align to this locus in the
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Empty string in the case of a deletion. String of length > 1 if there
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openvax/varlens | varlens/read_evidence/pileup_element.py | PileupElement.min_base_quality | def min_base_quality(self):
'''
The minimum of the base qualities. In the case of a deletion, in which
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'''
try:
return min(s... | python | def min_base_quality(self):
'''
The minimum of the base qualities. In the case of a deletion, in which
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openvax/varlens | varlens/read_evidence/pileup_element.py | PileupElement.from_pysam_alignment | def from_pysam_alignment(locus, pileup_read):
'''
Factory function to create a new PileupElement from a pysam
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Parameters
----------
locus : varcode.Locus
Reference locus for which to construct a PileupElement. Must
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Factory function to create a new PileupElement from a pysam
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polyaxon/hestia | hestia/http.py | safe_request | def safe_request(
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headers=None,
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timeout=30,
verify_ssl=True,
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session = requests.Session()
kwargs = {}
if json:
kwargs['json'] = json
... | python | def safe_request(
url,
method=None,
params=None,
data=None,
json=None,
headers=None,
allow_redirects=False,
timeout=30,
verify_ssl=True,
):
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session = requests.Session()
kwargs = {}
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klmitch/turnstile | turnstile/remote.py | remote | def remote(func):
"""
Decorator to mark a function as invoking a remote procedure call.
When invoked in server mode, the function will be called; when
invoked in client mode, an RPC will be initiated.
"""
@functools.wraps(func)
def wrapper(self, *args, **kwargs):
if self.mode == 'se... | python | def remote(func):
"""
Decorator to mark a function as invoking a remote procedure call.
When invoked in server mode, the function will be called; when
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"""
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klmitch/turnstile | turnstile/remote.py | Connection.send | def send(self, cmd, *payload):
"""
Send a command message to the other end.
:param cmd: The command to send to the other end.
:param payload: The command payload. Note that all elements
of the payload must be serializable to JSON.
"""
# If it's ... | python | def send(self, cmd, *payload):
"""
Send a command message to the other end.
:param cmd: The command to send to the other end.
:param payload: The command payload. Note that all elements
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klmitch/turnstile | turnstile/remote.py | Connection._recvbuf_pop | def _recvbuf_pop(self):
"""
Internal helper to pop a message off the receive buffer. If
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"""
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Internal helper to pop a message off the receive buffer. If
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klmitch/turnstile | turnstile/remote.py | SimpleRPC.ping | def ping(self):
"""
Ping the server. Returns the time interval, in seconds,
required for the server to respond to the PING message.
"""
# Make sure we're connected
if not self.conn:
self.connect()
# Send the ping and wait for the response
se... | python | def ping(self):
"""
Ping the server. Returns the time interval, in seconds,
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# Make sure we're connected
if not self.conn:
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klmitch/turnstile | turnstile/remote.py | SimpleRPC.listen | def listen(self):
"""
Listen for clients. This method causes the SimpleRPC object
to switch to server mode. One thread will be created for each
client.
"""
# Make sure we're in server mode
if self.mode and self.mode != 'server':
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"""
Listen for clients. This method causes the SimpleRPC object
to switch to server mode. One thread will be created for each
client.
"""
# Make sure we're in server mode
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klmitch/turnstile | turnstile/remote.py | SimpleRPC.serve | def serve(self, conn, addr, auth=False):
"""
Handle a single client.
:param conn: The Connection instance.
:param addr: The address of the client, for logging purposes.
:param auth: A boolean specifying whether the connection
should be considered authenticat... | python | def serve(self, conn, addr, auth=False):
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Handle a single client.
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klmitch/turnstile | turnstile/remote.py | RemoteControlDaemon.get_limits | def get_limits(self):
"""
Retrieve the LimitData object the middleware will use for
getting the limits. This implementation returns a
RemoteLimitData instance that can access the LimitData stored
in the RemoteControlDaemon process.
"""
# Set one up if we don't a... | python | def get_limits(self):
"""
Retrieve the LimitData object the middleware will use for
getting the limits. This implementation returns a
RemoteLimitData instance that can access the LimitData stored
in the RemoteControlDaemon process.
"""
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kata198/python-subprocess2 | subprocess2/__init__.py | waitUpTo | def waitUpTo(self, timeoutSeconds, pollInterval=DEFAULT_POLL_INTERVAL):
'''
Popen.waitUpTo - Wait up to a certain number of seconds for the process to end.
@param timeoutSeconds <float> - Number of seconds to wait
@param pollInterval <float> (default .05) - Number of seconds in bet... | python | def waitUpTo(self, timeoutSeconds, pollInterval=DEFAULT_POLL_INTERVAL):
'''
Popen.waitUpTo - Wait up to a certain number of seconds for the process to end.
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kata198/python-subprocess2 | subprocess2/__init__.py | waitOrTerminate | def waitOrTerminate(self, timeoutSeconds, pollInterval=DEFAULT_POLL_INTERVAL, terminateToKillSeconds=SUBPROCESS2_DEFAULT_TERMINATE_TO_KILL_SECONDS):
'''
waitOrTerminate - Wait up to a certain number of seconds for the process to end.
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'''
waitOrTerminate - Wait up to a certain number of seconds for the process to end.
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kata198/python-subprocess2 | subprocess2/__init__.py | runInBackground | def runInBackground(self, pollInterval=.1, encoding=False):
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jstitch/MambuPy | MambuPy/rest/mambugroup.py | MambuGroup.setClients | def setClients(self, *args, **kwargs):
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The 'groupMembers' field of the group holds the encodedKeys of
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... | python | def setClients(self, *args, **kwargs):
"""Adds the clients for this group to a 'clients' field.
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jstitch/MambuPy | MambuPy/rest/mambugroup.py | MambuGroup.setActivities | def setActivities(self, *args, **kwargs):
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Activities are MambuActivity objects.
Activities get sorted by activity timestamp.
Returns the number of requests done to Mambu.
"""
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"""Adds the activities for this group to a 'activities' field.
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Returns the number of requests done to Mambu.
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azogue/i2csense | i2csense/bh1750.py | BH1750.set_sensitivity | def set_sensitivity(self, sensitivity=DEFAULT_SENSITIVITY):
"""Set the sensitivity value.
Valid values are 31 (lowest) to 254 (highest), default is 69.
"""
if sensitivity < 31:
self._mtreg = 31
elif sensitivity > 254:
self._mtreg = 254
else:
... | python | def set_sensitivity(self, sensitivity=DEFAULT_SENSITIVITY):
"""Set the sensitivity value.
Valid values are 31 (lowest) to 254 (highest), default is 69.
"""
if sensitivity < 31:
self._mtreg = 31
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azogue/i2csense | i2csense/bh1750.py | BH1750._get_result | def _get_result(self) -> float:
"""Return current measurement result in lx."""
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self._ok = True
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self._ok = False
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"""Return current measurement result in lx."""
try:
data = self._bus.read_word_data(self._i2c_add, self._mode)
self._ok = True
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azogue/i2csense | i2csense/bh1750.py | BH1750._wait_for_result | def _wait_for_result(self):
"""Wait for the sensor to be ready for measurement."""
basetime = 0.018 if self._low_res else 0.128
sleep(basetime * (self._mtreg / 69.0) + self._delay) | python | def _wait_for_result(self):
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azogue/i2csense | i2csense/bh1750.py | BH1750.update | def update(self):
"""Update the measured light level in lux."""
if not self._continuous_sampling \
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or self._operation_mode != self._mode:
self._reset()
self._set_mode(self._operation_mode)
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"""Update the measured light level in lux."""
if not self._continuous_sampling \
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self._reset()
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jstitch/MambuPy | MambuPy/rest/mambustruct.py | setCustomField | def setCustomField(mambuentity, customfield="", *args, **kwargs):
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jstitch/MambuPy | MambuPy/rest/mambustruct.py | MambuStruct.connect | def connect(self, *args, **kwargs):
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jstitch/MambuPy | MambuPy/rest/mambustruct.py | MambuStruct.convertDict2Attrs | def convertDict2Attrs(self, *args, **kwargs):
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jstitch/MambuPy | MambuPy/rest/mambustruct.py | MambuStruct.create | def create(self, data, *args, **kwargs):
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Args:
data (dictionary): dictionary with data to send, this dictionary
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ExoticObjects/django-sql-server-bcp | django_sql_server_bcp/__init__.py | BCPFormat.make | def make(self, cmd_args, db_args):
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transifex/transifex-python-library | txlib/api/resources.py | Resource.retrieve_content | def retrieve_content(self):
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rsgalloway/grit | grit/repo/local.py | Local.versions | def versions(self, version=None):
"""
List of Versions of this repository.
:param version: Version index.
:param rev: Commit sha or ref.
:return: List of Version objects matching params.
"""
try:
versions = [Version(self, c) for c in self._commits()]... | python | def versions(self, version=None):
"""
List of Versions of this repository.
:param version: Version index.
:param rev: Commit sha or ref.
:return: List of Version objects matching params.
"""
try:
versions = [Version(self, c) for c in self._commits()]... | [
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rsgalloway/grit | grit/repo/local.py | Local.setDescription | def setDescription(self, desc='No description'):
"""sets repository description"""
try:
self._put_named_file('description', desc)
except Exception, e:
raise RepoError(e) | python | def setDescription(self, desc='No description'):
"""sets repository description"""
try:
self._put_named_file('description', desc)
except Exception, e:
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rsgalloway/grit | grit/repo/local.py | Local.new | def new(self, path, desc=None, bare=True):
"""
Create a new bare repo.Local instance.
:param path: Path to new repo.
:param desc: Repo description.
:param bare: Create as bare repo.
:returns: New repo.Local instance.
"""
if os.path.exists(path):
... | python | def new(self, path, desc=None, bare=True):
"""
Create a new bare repo.Local instance.
:param path: Path to new repo.
:param desc: Repo description.
:param bare: Create as bare repo.
:returns: New repo.Local instance.
"""
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rsgalloway/grit | grit/repo/local.py | Local.branch | def branch(self, name, desc=None):
"""
Create a branch of this repo at 'name'.
:param name: Name of new branch
:param desc: Repo description.
:return: New Local instance.
"""
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"""
Create a branch of this repo at 'name'.
:param name: Name of new branch
:param desc: Repo description.
:return: New Local instance.
"""
return Local.new(path=os.path.join(self.path, name), desc=desc, bare=True) | [
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rsgalloway/grit | grit/repo/local.py | Local.addItem | def addItem(self, item, message=None):
"""add a new Item class object"""
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message = 'Adding item %s' % item.path
try:
v = Version.new(repo=self)
v.addItem(item)
v.save(message)
except VersionError, e:
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"""add a new Item class object"""
if message is None:
message = 'Adding item %s' % item.path
try:
v = Version.new(repo=self)
v.addItem(item)
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rsgalloway/grit | grit/repo/local.py | Local.items | def items(self, path=None, version=None):
"""
Returns a list of items.
:param path: Regex filter on item path.
:param version: Repo versions number/index.
:return: List of Item class objects.
"""
if version is None:
version = -1
items = {}
... | python | def items(self, path=None, version=None):
"""
Returns a list of items.
:param path: Regex filter on item path.
:param version: Repo versions number/index.
:return: List of Item class objects.
"""
if version is None:
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BernardFW/bernard | src/bernard/platforms/telegram/_utils.py | set_reply_markup | async def set_reply_markup(msg: Dict, request: 'Request', stack: 'Stack') \
-> None:
"""
Add the "reply markup" to a message from the layers
:param msg: Message dictionary
:param request: Current request being replied
:param stack: Stack to analyze
"""
from bernard.platforms.telegr... | python | async def set_reply_markup(msg: Dict, request: 'Request', stack: 'Stack') \
-> None:
"""
Add the "reply markup" to a message from the layers
:param msg: Message dictionary
:param request: Current request being replied
:param stack: Stack to analyze
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BernardFW/bernard | src/bernard/i18n/utils.py | split_locale | def split_locale(locale: Text) -> Tuple[Text, Optional[Text]]:
"""
Decompose the locale into a normalized tuple.
The first item is the locale (as lowercase letters) while the second item
is either the country as lower case either None if no country was supplied.
"""
items = re.split(r'[_\-]', ... | python | def split_locale(locale: Text) -> Tuple[Text, Optional[Text]]:
"""
Decompose the locale into a normalized tuple.
The first item is the locale (as lowercase letters) while the second item
is either the country as lower case either None if no country was supplied.
"""
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BernardFW/bernard | src/bernard/i18n/utils.py | compare_locales | def compare_locales(a, b):
"""
Compares two locales to find the level of compatibility
:param a: First locale
:param b: Second locale
:return: 2 full match, 1 lang match, 0 no match
"""
if a is None or b is None:
if a == b:
return 2
else:
return 0
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"""
Compares two locales to find the level of compatibility
:param a: First locale
:param b: Second locale
:return: 2 full match, 1 lang match, 0 no match
"""
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BernardFW/bernard | src/bernard/i18n/utils.py | LocalesDict.list_locales | def list_locales(self) -> List[Optional[Text]]:
"""
Returns the list of available locales. The first locale is the default
locale to be used. If no locales are known, then `None` will be the
first item.
"""
locales = list(self.dict.keys())
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"""
Returns the list of available locales. The first locale is the default
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BernardFW/bernard | src/bernard/i18n/utils.py | LocalesDict.choose_locale | def choose_locale(self, locale: Text) -> Text:
"""
Returns the best matching locale in what is available.
:param locale: Locale to match
:return: Locale to use
"""
if locale not in self._choice_cache:
locales = self.list_locales()
best_choice = ... | python | def choose_locale(self, locale: Text) -> Text:
"""
Returns the best matching locale in what is available.
:param locale: Locale to match
:return: Locale to use
"""
if locale not in self._choice_cache:
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BernardFW/bernard | src/bernard/i18n/utils.py | LocalesFlatDict.update | def update(self, new_data: Dict[Text, Dict[Text, Text]]):
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Receive an update from a loader.
:param new_data: New translation data from the loader
"""
for locale, data in new_data.items():
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... | python | def update(self, new_data: Dict[Text, Dict[Text, Text]]):
"""
Receive an update from a loader.
:param new_data: New translation data from the loader
"""
for locale, data in new_data.items():
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BernardFW/bernard | src/bernard/platforms/facebook/helpers.py | UrlButton._make_url | async def _make_url(self, url: Text, request: 'Request') -> Text:
"""
Signs the URL if needed
"""
if self.sign_webview:
return await request.sign_url(url)
return url | python | async def _make_url(self, url: Text, request: 'Request') -> Text:
"""
Signs the URL if needed
"""
if self.sign_webview:
return await request.sign_url(url)
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BernardFW/bernard | src/bernard/platforms/facebook/helpers.py | Card.is_sharable | def is_sharable(self):
"""
Make sure that nothing inside blocks sharing.
"""
if self.buttons:
return (all(b.is_sharable() for b in self.buttons) and
self.default_action and
self.default_action.is_sharable()) | python | def is_sharable(self):
"""
Make sure that nothing inside blocks sharing.
"""
if self.buttons:
return (all(b.is_sharable() for b in self.buttons) and
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ioos/cc-plugin-ncei | cc_plugin_ncei/ncei_grid.py | NCEIGridBase.check_bounds_variables | def check_bounds_variables(self, dataset):
'''
Checks the grid boundary variables.
:param netCDF4.Dataset dataset: An open netCDF dataset
'''
recommended_ctx = TestCtx(BaseCheck.MEDIUM, 'Recommended variables to describe grid boundaries')
bounds_map = {
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'''
Checks the grid boundary variables.
:param netCDF4.Dataset dataset: An open netCDF dataset
'''
recommended_ctx = TestCtx(BaseCheck.MEDIUM, 'Recommended variables to describe grid boundaries')
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walter426/Python_GoogleMapsApi | GoogleMapsApi/geocode.py | Geocoding.geocode | def geocode(self, string, bounds=None, region=None,
language=None, sensor=False):
'''Geocode an address.
Pls refer to the Google Maps Web API for the details of the parameters
'''
if isinstance(string, unicode):
string = string.encode('utf-8')
params ... | python | def geocode(self, string, bounds=None, region=None,
language=None, sensor=False):
'''Geocode an address.
Pls refer to the Google Maps Web API for the details of the parameters
'''
if isinstance(string, unicode):
string = string.encode('utf-8')
params ... | [
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walter426/Python_GoogleMapsApi | GoogleMapsApi/geocode.py | Geocoding.reverse | def reverse(self, point, language=None, sensor=False):
'''Reverse geocode a point.
Pls refer to the Google Maps Web API for the details of the parameters
'''
params = {
'latlng': point,
'sensor': str(sensor).lower()
}
if language:
... | python | def reverse(self, point, language=None, sensor=False):
'''Reverse geocode a point.
Pls refer to the Google Maps Web API for the details of the parameters
'''
params = {
'latlng': point,
'sensor': str(sensor).lower()
}
if language:
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walter426/Python_GoogleMapsApi | GoogleMapsApi/directions.py | Directions.GetDirections | def GetDirections(self, origin, destination, sensor = False, mode = None, waypoints = None, alternatives = None, avoid = None, language = None, units = None,
region = None, departure_time = None, arrival_time = None):
'''Get Directions Service
Pls refer to the Google Maps Web ... | python | def GetDirections(self, origin, destination, sensor = False, mode = None, waypoints = None, alternatives = None, avoid = None, language = None, units = None,
region = None, departure_time = None, arrival_time = None):
'''Get Directions Service
Pls refer to the Google Maps Web ... | [
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sthysel/knobs | src/knobs.py | ListKnob.get | def get(self):
"""
convert json env variable if set to list
"""
self._cast = type([])
source_value = os.getenv(self.env_name)
# set the environment if it is not set
if source_value is None:
os.environ[self.env_name] = json.dumps(self.default)
... | python | def get(self):
"""
convert json env variable if set to list
"""
self._cast = type([])
source_value = os.getenv(self.env_name)
# set the environment if it is not set
if source_value is None:
os.environ[self.env_name] = json.dumps(self.default)
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/parsers.py | parse_ppi_graph | def parse_ppi_graph(path: str, min_edge_weight: float = 0.0) -> Graph:
"""Build an undirected graph of gene interactions from edgelist file.
:param str path: The path to the edgelist file
:param float min_edge_weight: Cutoff to keep/remove the edges, default is 0, but could also be 0.63.
:return Graph:... | python | def parse_ppi_graph(path: str, min_edge_weight: float = 0.0) -> Graph:
"""Build an undirected graph of gene interactions from edgelist file.
:param str path: The path to the edgelist file
:param float min_edge_weight: Cutoff to keep/remove the edges, default is 0, but could also be 0.63.
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/parsers.py | parse_excel | def parse_excel(file_path: str,
entrez_id_header,
log_fold_change_header,
adjusted_p_value_header,
entrez_delimiter,
base_mean_header=None) -> List[Gene]:
"""Read an excel file on differential expression values as Gene objects.
:pa... | python | def parse_excel(file_path: str,
entrez_id_header,
log_fold_change_header,
adjusted_p_value_header,
entrez_delimiter,
base_mean_header=None) -> List[Gene]:
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/parsers.py | parse_csv | def parse_csv(file_path: str,
entrez_id_header,
log_fold_change_header,
adjusted_p_value_header,
entrez_delimiter,
base_mean_header=None,
sep=",") -> List[Gene]:
"""Read a csv file on differential expression values as Gene objects.
... | python | def parse_csv(file_path: str,
entrez_id_header,
log_fold_change_header,
adjusted_p_value_header,
entrez_delimiter,
base_mean_header=None,
sep=",") -> List[Gene]:
"""Read a csv file on differential expression values as Gene objects.
... | [
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/parsers.py | handle_dataframe | def handle_dataframe(
df: pd.DataFrame,
entrez_id_name,
log2_fold_change_name,
adjusted_p_value_name,
entrez_delimiter,
base_mean=None,
) -> List[Gene]:
"""Convert data frame on differential expression values as Gene objects.
:param df: Data frame with columns sh... | python | def handle_dataframe(
df: pd.DataFrame,
entrez_id_name,
log2_fold_change_name,
adjusted_p_value_name,
entrez_delimiter,
base_mean=None,
) -> List[Gene]:
"""Convert data frame on differential expression values as Gene objects.
:param df: Data frame with columns sh... | [
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/parsers.py | parse_gene_list | def parse_gene_list(path: str, graph: Graph, anno_type: str = "name") -> list:
"""Parse a list of genes and return them if they are in the network.
:param str path: The path of input file.
:param Graph graph: The graph with genes as nodes.
:param str anno_type: The type of annotation with two options:n... | python | def parse_gene_list(path: str, graph: Graph, anno_type: str = "name") -> list:
"""Parse a list of genes and return them if they are in the network.
:param str path: The path of input file.
:param Graph graph: The graph with genes as nodes.
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/parsers.py | parse_disease_ids | def parse_disease_ids(path: str):
"""Parse the disease identifier file.
:param str path: Path to the disease identifier file.
:return: List of disease identifiers.
"""
if os.path.isdir(path) or not os.path.exists(path):
logger.info("Couldn't find the disease identifiers file. Returning empt... | python | def parse_disease_ids(path: str):
"""Parse the disease identifier file.
:param str path: Path to the disease identifier file.
:return: List of disease identifiers.
"""
if os.path.isdir(path) or not os.path.exists(path):
logger.info("Couldn't find the disease identifiers file. Returning empt... | [
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GuiltyTargets/ppi-network-annotation | src/ppi_network_annotation/parsers.py | parse_disease_associations | def parse_disease_associations(path: str, excluded_disease_ids: set):
"""Parse the disease-drug target associations file.
:param str path: Path to the disease-drug target associations file.
:param list excluded_disease_ids: Identifiers of the disease for which drug targets are being predicted.
:return:... | python | def parse_disease_associations(path: str, excluded_disease_ids: set):
"""Parse the disease-drug target associations file.
:param str path: Path to the disease-drug target associations file.
:param list excluded_disease_ids: Identifiers of the disease for which drug targets are being predicted.
:return:... | [
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