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Kortemme-Lab/klab
klab/bio/pymolmod/colors.py
ColorScheme.lookup
def lookup(self, path, must_be_leaf = False): '''Looks up a part of the color scheme. If used for looking up colors, must_be_leaf should be True.''' assert(type(path) == type(self.name)) d = self.color_scheme tokens = path.split('.') for t in tokens[:-1]: d = d.get(t...
python
def lookup(self, path, must_be_leaf = False): '''Looks up a part of the color scheme. If used for looking up colors, must_be_leaf should be True.''' assert(type(path) == type(self.name)) d = self.color_scheme tokens = path.split('.') for t in tokens[:-1]: d = d.get(t...
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Looks up a part of the color scheme. If used for looking up colors, must_be_leaf should be True.
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/pymolmod/colors.py#L399-L411
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
resolve_pid
def resolve_pid(fetched_pid): """Retrieve the real PID given a fetched PID. :param pid: fetched PID to resolve. """ return PersistentIdentifier.get( pid_type=fetched_pid.pid_type, pid_value=fetched_pid.pid_value, pid_provider=fetched_pid.provider.pid_provider )
python
def resolve_pid(fetched_pid): """Retrieve the real PID given a fetched PID. :param pid: fetched PID to resolve. """ return PersistentIdentifier.get( pid_type=fetched_pid.pid_type, pid_value=fetched_pid.pid_value, pid_provider=fetched_pid.provider.pid_provider )
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Retrieve the real PID given a fetched PID. :param pid: fetched PID to resolve.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L69-L78
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDQuery.ordered
def ordered(self, ord='desc'): """Order the query result on the relations' indexes.""" if ord not in ('asc', 'desc', ): raise ord_f = getattr(PIDRelation.index, ord)() return self.order_by(ord_f)
python
def ordered(self, ord='desc'): """Order the query result on the relations' indexes.""" if ord not in ('asc', 'desc', ): raise ord_f = getattr(PIDRelation.index, ord)() return self.order_by(ord_f)
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Order the query result on the relations' indexes.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L53-L58
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDQuery.status
def status(self, status_in): """Filter the PIDs based on their status.""" if isinstance(status_in, PIDStatus): status_in = [status_in, ] return self.filter( self._filtered_pid_class.status.in_(status_in) )
python
def status(self, status_in): """Filter the PIDs based on their status.""" if isinstance(status_in, PIDStatus): status_in = [status_in, ] return self.filter( self._filtered_pid_class.status.in_(status_in) )
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L60-L66
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNode._resolved_pid
def _resolved_pid(self): """Resolve self.pid if it is a fetched pid.""" if not isinstance(self.pid, PersistentIdentifier): return resolve_pid(self.pid) return self.pid
python
def _resolved_pid(self): """Resolve self.pid if it is a fetched pid.""" if not isinstance(self.pid, PersistentIdentifier): return resolve_pid(self.pid) return self.pid
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L105-L109
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNode._get_child_relation
def _get_child_relation(self, child_pid): """Retrieve the relation between this node and a child PID.""" return PIDRelation.query.filter_by( parent=self._resolved_pid, child=child_pid, relation_type=self.relation_type.id).one()
python
def _get_child_relation(self, child_pid): """Retrieve the relation between this node and a child PID.""" return PIDRelation.query.filter_by( parent=self._resolved_pid, child=child_pid, relation_type=self.relation_type.id).one()
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L111-L116
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNode._check_child_limits
def _check_child_limits(self, child_pid): """Check that inserting a child is within the limits.""" if self.max_children is not None and \ self.children.count() >= self.max_children: raise PIDRelationConsistencyError( "Max number of children is set to {}.". ...
python
def _check_child_limits(self, child_pid): """Check that inserting a child is within the limits.""" if self.max_children is not None and \ self.children.count() >= self.max_children: raise PIDRelationConsistencyError( "Max number of children is set to {}.". ...
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Check that inserting a child is within the limits.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L118-L131
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNode._connected_pids
def _connected_pids(self, from_parent=True): """Follow a relationship to find connected PIDs.abs. :param from_parent: search children from the current pid if True, else search for its parents. :type from_parent: bool """ to_pid = aliased(PersistentIdentifier, name='to_pi...
python
def _connected_pids(self, from_parent=True): """Follow a relationship to find connected PIDs.abs. :param from_parent: search children from the current pid if True, else search for its parents. :type from_parent: bool """ to_pid = aliased(PersistentIdentifier, name='to_pi...
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L133-L167
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNode.insert_child
def insert_child(self, child_pid): """Add the given PID to the list of children PIDs.""" self._check_child_limits(child_pid) try: # TODO: Here add the check for the max parents and the max children with db.session.begin_nested(): if not isinstance(child_pi...
python
def insert_child(self, child_pid): """Add the given PID to the list of children PIDs.""" self._check_child_limits(child_pid) try: # TODO: Here add the check for the max parents and the max children with db.session.begin_nested(): if not isinstance(child_pi...
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L189-L201
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNodeOrdered.index
def index(self, child_pid): """Index of the child in the relation.""" if not isinstance(child_pid, PersistentIdentifier): child_pid = resolve_pid(child_pid) relation = PIDRelation.query.filter_by( parent=self._resolved_pid, child=child_pid, relatio...
python
def index(self, child_pid): """Index of the child in the relation.""" if not isinstance(child_pid, PersistentIdentifier): child_pid = resolve_pid(child_pid) relation = PIDRelation.query.filter_by( parent=self._resolved_pid, child=child_pid, relatio...
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Index of the child in the relation.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L222-L230
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNodeOrdered.is_last_child
def is_last_child(self, child_pid): """ Determine if 'pid' is the latest version of a resource. Resolves True for Versioned PIDs which are the oldest of its siblings. False otherwise, also for Head PIDs. """ last_child = self.last_child if last_child is None: ...
python
def is_last_child(self, child_pid): """ Determine if 'pid' is the latest version of a resource. Resolves True for Versioned PIDs which are the oldest of its siblings. False otherwise, also for Head PIDs. """ last_child = self.last_child if last_child is None: ...
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Determine if 'pid' is the latest version of a resource. Resolves True for Versioned PIDs which are the oldest of its siblings. False otherwise, also for Head PIDs.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L232-L242
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNodeOrdered.last_child
def last_child(self): """ Get the latest PID as pointed by the Head PID. If the 'pid' is a Head PID, return the latest of its children. If the 'pid' is a Version PID, return the latest of its siblings. Return None for the non-versioned PIDs. """ return self.child...
python
def last_child(self): """ Get the latest PID as pointed by the Head PID. If the 'pid' is a Head PID, return the latest of its children. If the 'pid' is a Version PID, return the latest of its siblings. Return None for the non-versioned PIDs. """ return self.child...
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Get the latest PID as pointed by the Head PID. If the 'pid' is a Head PID, return the latest of its children. If the 'pid' is a Version PID, return the latest of its siblings. Return None for the non-versioned PIDs.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L245-L254
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNodeOrdered.next_child
def next_child(self, child_pid): """Get the next child PID in the PID relation.""" relation = self._get_child_relation(child_pid) if relation.index is not None: return self.children.filter( PIDRelation.index > relation.index ).ordered(ord='asc').first() ...
python
def next_child(self, child_pid): """Get the next child PID in the PID relation.""" relation = self._get_child_relation(child_pid) if relation.index is not None: return self.children.filter( PIDRelation.index > relation.index ).ordered(ord='asc').first() ...
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Get the next child PID in the PID relation.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L256-L264
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/api.py
PIDNodeOrdered.insert_child
def insert_child(self, child_pid, index=-1): """Insert a new child into a PID concept. Argument 'index' can take the following values: 0,1,2,... - insert child PID at the specified position -1 - insert the child PID at the last position None - insert child without or...
python
def insert_child(self, child_pid, index=-1): """Insert a new child into a PID concept. Argument 'index' can take the following values: 0,1,2,... - insert child PID at the specified position -1 - insert the child PID at the last position None - insert child without or...
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Insert a new child into a PID concept. Argument 'index' can take the following values: 0,1,2,... - insert child PID at the specified position -1 - insert the child PID at the last position None - insert child without order (no re-ordering is done) NOTE: If 'inde...
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/api.py#L276-L307
train
projectshift/shift-boiler
boiler/jinja/functions.py
asset
def asset(url=None): """ Asset helper Generates path to a static asset based on configuration base path and support for versioning. Will easily allow you to move your assets away to a CDN without changing templates. Versioning allows you to cache your asset changes forever by the webserver. ...
python
def asset(url=None): """ Asset helper Generates path to a static asset based on configuration base path and support for versioning. Will easily allow you to move your assets away to a CDN without changing templates. Versioning allows you to cache your asset changes forever by the webserver. ...
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Asset helper Generates path to a static asset based on configuration base path and support for versioning. Will easily allow you to move your assets away to a CDN without changing templates. Versioning allows you to cache your asset changes forever by the webserver. :param url: string - relative pa...
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/jinja/functions.py#L6-L37
train
clement-alexandre/TotemBionet
totembionet/src/model_picker/model_picker.py
pick_a_model_randomly
def pick_a_model_randomly(models: List[Any]) -> Any: """ Naive picking function, return one of the models chosen randomly. """ try: return random.choice(models) except IndexError as e: raise ModelPickerException(cause=e)
python
def pick_a_model_randomly(models: List[Any]) -> Any: """ Naive picking function, return one of the models chosen randomly. """ try: return random.choice(models) except IndexError as e: raise ModelPickerException(cause=e)
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Naive picking function, return one of the models chosen randomly.
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f37a2f9358c1ce49f21c4a868b904da5dcd4614f
https://github.com/clement-alexandre/TotemBionet/blob/f37a2f9358c1ce49f21c4a868b904da5dcd4614f/totembionet/src/model_picker/model_picker.py#L16-L21
train
uogbuji/versa
tools/py/pipeline/core_actions.py
link
def link(origin=None, rel=None, value=None, attributes=None, source=None): ''' Action function generator to create a link based on the context's current link, or on provided parameters :param origin: IRI/string, or list of same; origins for the created relationships. If None, the action context provide...
python
def link(origin=None, rel=None, value=None, attributes=None, source=None): ''' Action function generator to create a link based on the context's current link, or on provided parameters :param origin: IRI/string, or list of same; origins for the created relationships. If None, the action context provide...
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Action function generator to create a link based on the context's current link, or on provided parameters :param origin: IRI/string, or list of same; origins for the created relationships. If None, the action context provides the parameter. :param rel: IRI/string, or list of same; IDs for the created rela...
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f092ffc7ed363a5b170890955168500f32de0dd5
https://github.com/uogbuji/versa/blob/f092ffc7ed363a5b170890955168500f32de0dd5/tools/py/pipeline/core_actions.py#L17-L64
train
uogbuji/versa
tools/py/pipeline/core_actions.py
attr
def attr(aid): ''' Action function generator to retrieve an attribute from the current link ''' def _attr(ctx): return ctx.current_link[ATTRIBUTES].get(aid) return _attr
python
def attr(aid): ''' Action function generator to retrieve an attribute from the current link ''' def _attr(ctx): return ctx.current_link[ATTRIBUTES].get(aid) return _attr
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Action function generator to retrieve an attribute from the current link
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f092ffc7ed363a5b170890955168500f32de0dd5
https://github.com/uogbuji/versa/blob/f092ffc7ed363a5b170890955168500f32de0dd5/tools/py/pipeline/core_actions.py#L82-L88
train
uogbuji/versa
tools/py/pipeline/core_actions.py
values
def values(*rels): ''' Action function generator to compute a set of relationships from criteria :param rels: List of relationships to compute :return: Versa action function to do the actual work ''' #Action function generator to multiplex a relationship at processing time def _values(ctx):...
python
def values(*rels): ''' Action function generator to compute a set of relationships from criteria :param rels: List of relationships to compute :return: Versa action function to do the actual work ''' #Action function generator to multiplex a relationship at processing time def _values(ctx):...
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Action function generator to compute a set of relationships from criteria :param rels: List of relationships to compute :return: Versa action function to do the actual work
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f092ffc7ed363a5b170890955168500f32de0dd5
https://github.com/uogbuji/versa/blob/f092ffc7ed363a5b170890955168500f32de0dd5/tools/py/pipeline/core_actions.py#L109-L126
train
uogbuji/versa
tools/py/pipeline/core_actions.py
foreach
def foreach(origin=None, rel=None, target=None, attributes=None): ''' Action function generator to compute a combination of links :return: Versa action function to do the actual work ''' def _foreach(ctx): ''' Versa action function utility to compute a list of values from a list of ...
python
def foreach(origin=None, rel=None, target=None, attributes=None): ''' Action function generator to compute a combination of links :return: Versa action function to do the actual work ''' def _foreach(ctx): ''' Versa action function utility to compute a list of values from a list of ...
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Action function generator to compute a combination of links :return: Versa action function to do the actual work
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f092ffc7ed363a5b170890955168500f32de0dd5
https://github.com/uogbuji/versa/blob/f092ffc7ed363a5b170890955168500f32de0dd5/tools/py/pipeline/core_actions.py#L152-L182
train
uogbuji/versa
tools/py/pipeline/core_actions.py
res
def res(arg): ''' Convert the argument into an IRI ref ''' def _res(ctx): _arg = arg(ctx) if callable(arg) else arg return I(arg) return _res
python
def res(arg): ''' Convert the argument into an IRI ref ''' def _res(ctx): _arg = arg(ctx) if callable(arg) else arg return I(arg) return _res
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f092ffc7ed363a5b170890955168500f32de0dd5
https://github.com/uogbuji/versa/blob/f092ffc7ed363a5b170890955168500f32de0dd5/tools/py/pipeline/core_actions.py#L322-L329
train
ronhanson/python-tbx
tbx/code.py
static_singleton
def static_singleton(*args, **kwargs): """ STATIC Singleton Design Pattern Decorator Class is initialized with arguments passed into the decorator. :Usage: >>> @static_singleton('yop') class Bob(Person): def __init__(arg1): self.info = arg1 def says...
python
def static_singleton(*args, **kwargs): """ STATIC Singleton Design Pattern Decorator Class is initialized with arguments passed into the decorator. :Usage: >>> @static_singleton('yop') class Bob(Person): def __init__(arg1): self.info = arg1 def says...
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STATIC Singleton Design Pattern Decorator Class is initialized with arguments passed into the decorator. :Usage: >>> @static_singleton('yop') class Bob(Person): def __init__(arg1): self.info = arg1 def says(self): print self.info b1 ...
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87f72ae0cadecafbcd144f1e930181fba77f6b83
https://github.com/ronhanson/python-tbx/blob/87f72ae0cadecafbcd144f1e930181fba77f6b83/tbx/code.py#L19-L42
train
ronhanson/python-tbx
tbx/code.py
get_method_documentation
def get_method_documentation(method): """ This function uses "inspect" to retrieve information about a method. Also, if you place comment on the method, method can be docummented with "reStructured Text". :param method: method to describe :returns: { 'name' : <stri...
python
def get_method_documentation(method): """ This function uses "inspect" to retrieve information about a method. Also, if you place comment on the method, method can be docummented with "reStructured Text". :param method: method to describe :returns: { 'name' : <stri...
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This function uses "inspect" to retrieve information about a method. Also, if you place comment on the method, method can be docummented with "reStructured Text". :param method: method to describe :returns: { 'name' : <string> - name of the method, 'friendly_na...
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87f72ae0cadecafbcd144f1e930181fba77f6b83
https://github.com/ronhanson/python-tbx/blob/87f72ae0cadecafbcd144f1e930181fba77f6b83/tbx/code.py#L145-L208
train
ronhanson/python-tbx
tbx/code.py
sort_dictionary_list
def sort_dictionary_list(dict_list, sort_key): """ sorts a list of dictionaries based on the value of the sort_key dict_list - a list of dictionaries sort_key - a string that identifies the key to sort the dictionaries with. Test sorting a list of dictionaries: >>> sort_dictionary_list([{...
python
def sort_dictionary_list(dict_list, sort_key): """ sorts a list of dictionaries based on the value of the sort_key dict_list - a list of dictionaries sort_key - a string that identifies the key to sort the dictionaries with. Test sorting a list of dictionaries: >>> sort_dictionary_list([{...
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sorts a list of dictionaries based on the value of the sort_key dict_list - a list of dictionaries sort_key - a string that identifies the key to sort the dictionaries with. Test sorting a list of dictionaries: >>> sort_dictionary_list([{'b' : 1, 'value' : 2}, {'c' : 2, 'value' : 3}, {'a' : 3, 'v...
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87f72ae0cadecafbcd144f1e930181fba77f6b83
https://github.com/ronhanson/python-tbx/blob/87f72ae0cadecafbcd144f1e930181fba77f6b83/tbx/code.py#L313-L327
train
ronhanson/python-tbx
tbx/code.py
SerializableObject.safe_info
def safe_info(self, dic=None): """ Returns public information of the object """ if dic is None and dic != {}: dic = self.to_dict() output = {} for (key, value) in dic.items(): if key[0] != '_': if isinstance(value, SerializableObjec...
python
def safe_info(self, dic=None): """ Returns public information of the object """ if dic is None and dic != {}: dic = self.to_dict() output = {} for (key, value) in dic.items(): if key[0] != '_': if isinstance(value, SerializableObjec...
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Returns public information of the object
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87f72ae0cadecafbcd144f1e930181fba77f6b83
https://github.com/ronhanson/python-tbx/blob/87f72ae0cadecafbcd144f1e930181fba77f6b83/tbx/code.py#L286-L310
train
projectshift/shift-boiler
boiler/cli/cli.py
run
def run(host='0.0.0.0', port=5000, reload=True, debug=True): """ Run development server """ from werkzeug.serving import run_simple app = bootstrap.get_app() return run_simple( hostname=host, port=port, application=app, use_reloader=reload, use_debugger=debug, ...
python
def run(host='0.0.0.0', port=5000, reload=True, debug=True): """ Run development server """ from werkzeug.serving import run_simple app = bootstrap.get_app() return run_simple( hostname=host, port=port, application=app, use_reloader=reload, use_debugger=debug, ...
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Run development server
[ "Run", "development", "server" ]
8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/cli/cli.py#L26-L37
train
projectshift/shift-boiler
boiler/cli/cli.py
shell
def shell(): """ Start application-aware shell """ app = bootstrap.get_app() context = dict(app=app) # and push app context app_context = app.app_context() app_context.push() # got ipython? ipython = importlib.util.find_spec("IPython") # run now if ipython: from IPytho...
python
def shell(): """ Start application-aware shell """ app = bootstrap.get_app() context = dict(app=app) # and push app context app_context = app.app_context() app_context.push() # got ipython? ipython = importlib.util.find_spec("IPython") # run now if ipython: from IPytho...
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Start application-aware shell
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/cli/cli.py#L41-L59
train
mardix/Mocha
mocha/render.py
SiteNavigation._push
def _push(self, title, view, class_name, is_class, **kwargs): """ Push nav data stack """ # Set the page title set_view_attr(view, "title", title, cls_name=class_name) module_name = view.__module__ method_name = view.__name__ _endpoint = build_endpoint_route_name(view,...
python
def _push(self, title, view, class_name, is_class, **kwargs): """ Push nav data stack """ # Set the page title set_view_attr(view, "title", title, cls_name=class_name) module_name = view.__module__ method_name = view.__name__ _endpoint = build_endpoint_route_name(view,...
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Push nav data stack
[ "Push", "nav", "data", "stack" ]
bce481cb31a0972061dd99bc548701411dcb9de3
https://github.com/mardix/Mocha/blob/bce481cb31a0972061dd99bc548701411dcb9de3/mocha/render.py#L329-L400
train
mardix/Mocha
mocha/render.py
SiteNavigation.render
def render(self): """ Render the menu into a sorted by order multi dict """ menu_list = [] menu_index = 0 for _, menu in copy.deepcopy(self.MENU).items(): subnav = [] menu["kwargs"]["_id"] = str(menu_index) menu["kwargs"]["active"] = False ...
python
def render(self): """ Render the menu into a sorted by order multi dict """ menu_list = [] menu_index = 0 for _, menu in copy.deepcopy(self.MENU).items(): subnav = [] menu["kwargs"]["_id"] = str(menu_index) menu["kwargs"]["active"] = False ...
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Render the menu into a sorted by order multi dict
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bce481cb31a0972061dd99bc548701411dcb9de3
https://github.com/mardix/Mocha/blob/bce481cb31a0972061dd99bc548701411dcb9de3/mocha/render.py#L425-L462
train
PBR/MQ2
MQ2/add_qtl_to_map.py
add_qtl_to_marker
def add_qtl_to_marker(marker, qtls): """Add the number of QTLs found for a given marker. :arg marker, the marker we are looking for the QTL's. :arg qtls, the list of all QTLs found. """ cnt = 0 for qtl in qtls: if qtl[-1] == marker[0]: cnt = cnt + 1 marker.append(str(c...
python
def add_qtl_to_marker(marker, qtls): """Add the number of QTLs found for a given marker. :arg marker, the marker we are looking for the QTL's. :arg qtls, the list of all QTLs found. """ cnt = 0 for qtl in qtls: if qtl[-1] == marker[0]: cnt = cnt + 1 marker.append(str(c...
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Add the number of QTLs found for a given marker. :arg marker, the marker we are looking for the QTL's. :arg qtls, the list of all QTLs found.
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6d84dea47e6751333004743f588f03158e35c28d
https://github.com/PBR/MQ2/blob/6d84dea47e6751333004743f588f03158e35c28d/MQ2/add_qtl_to_map.py#L38-L51
train
PBR/MQ2
MQ2/add_qtl_to_map.py
add_qtl_to_map
def add_qtl_to_map(qtlfile, mapfile, outputfile='map_with_qtls.csv'): """ This function adds to a genetic map for each marker the number of significant QTLs found. :arg qtlfile, the output from MapQTL transformed to a csv file via 'parse_mapqtl_file' which contains the closest markers. :arg map...
python
def add_qtl_to_map(qtlfile, mapfile, outputfile='map_with_qtls.csv'): """ This function adds to a genetic map for each marker the number of significant QTLs found. :arg qtlfile, the output from MapQTL transformed to a csv file via 'parse_mapqtl_file' which contains the closest markers. :arg map...
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This function adds to a genetic map for each marker the number of significant QTLs found. :arg qtlfile, the output from MapQTL transformed to a csv file via 'parse_mapqtl_file' which contains the closest markers. :arg mapfile, the genetic map with all the markers. :kwarg outputfile, the name of...
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6d84dea47e6751333004743f588f03158e35c28d
https://github.com/PBR/MQ2/blob/6d84dea47e6751333004743f588f03158e35c28d/MQ2/add_qtl_to_map.py#L54-L76
train
franciscoruiz/python-elm
elm327/connection.py
SerialConnection.send_command
def send_command(self, data, read_delay=None): """Write "data" to the port and return the response form it""" self._write(data) if read_delay: time.sleep(read_delay) return self._read()
python
def send_command(self, data, read_delay=None): """Write "data" to the port and return the response form it""" self._write(data) if read_delay: time.sleep(read_delay) return self._read()
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Write "data" to the port and return the response form it
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cdcecfc363b1eb25d21659bc14cf68a4a19970b6
https://github.com/franciscoruiz/python-elm/blob/cdcecfc363b1eb25d21659bc14cf68a4a19970b6/elm327/connection.py#L45-L50
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/serializers/utils.py
serialize_relations
def serialize_relations(pid): """Serialize the relations for given PID.""" data = {} relations = PIDRelation.get_child_relations(pid).all() for relation in relations: rel_cfg = resolve_relation_type_config(relation.relation_type) dump_relation(rel_cfg.api(relation.parent), ...
python
def serialize_relations(pid): """Serialize the relations for given PID.""" data = {} relations = PIDRelation.get_child_relations(pid).all() for relation in relations: rel_cfg = resolve_relation_type_config(relation.relation_type) dump_relation(rel_cfg.api(relation.parent), ...
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Serialize the relations for given PID.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/serializers/utils.py#L32-L44
train
inveniosoftware/invenio-pidrelations
invenio_pidrelations/serializers/utils.py
dump_relation
def dump_relation(api, rel_cfg, pid, data): """Dump a specific relation to a data dict.""" schema_class = rel_cfg.schema if schema_class is not None: schema = schema_class() schema.context['pid'] = pid result, errors = schema.dump(api) data.setdefault(rel_cfg.name, []).append...
python
def dump_relation(api, rel_cfg, pid, data): """Dump a specific relation to a data dict.""" schema_class = rel_cfg.schema if schema_class is not None: schema = schema_class() schema.context['pid'] = pid result, errors = schema.dump(api) data.setdefault(rel_cfg.name, []).append...
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Dump a specific relation to a data dict.
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a49f3725cf595b663c5b04814280b231f88bc333
https://github.com/inveniosoftware/invenio-pidrelations/blob/a49f3725cf595b663c5b04814280b231f88bc333/invenio_pidrelations/serializers/utils.py#L47-L54
train
mrtazz/InstapaperLibrary
instapaperlib/instapaperlib.py
Instapaper.add_item
def add_item(self, url, title=None, selection=None, jsonp=None, redirect=None, response_info=False): """ Method to add a new item to a instapaper account Parameters: url -> URL to add title -> optional title for the URL Returns: (status as int, s...
python
def add_item(self, url, title=None, selection=None, jsonp=None, redirect=None, response_info=False): """ Method to add a new item to a instapaper account Parameters: url -> URL to add title -> optional title for the URL Returns: (status as int, s...
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Method to add a new item to a instapaper account Parameters: url -> URL to add title -> optional title for the URL Returns: (status as int, status error message)
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bf273c02b468e523994d46def07f70902f596676
https://github.com/mrtazz/InstapaperLibrary/blob/bf273c02b468e523994d46def07f70902f596676/instapaperlib/instapaperlib.py#L75-L110
train
mrtazz/InstapaperLibrary
instapaperlib/instapaperlib.py
Instapaper._query
def _query(self, url=None, params=""): """ method to query a URL with the given parameters Parameters: url -> URL to query params -> dictionary with parameter values Returns: HTTP response code, headers If an exception occurred, head...
python
def _query(self, url=None, params=""): """ method to query a URL with the given parameters Parameters: url -> URL to query params -> dictionary with parameter values Returns: HTTP response code, headers If an exception occurred, head...
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method to query a URL with the given parameters Parameters: url -> URL to query params -> dictionary with parameter values Returns: HTTP response code, headers If an exception occurred, headers fields are None
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bf273c02b468e523994d46def07f70902f596676
https://github.com/mrtazz/InstapaperLibrary/blob/bf273c02b468e523994d46def07f70902f596676/instapaperlib/instapaperlib.py#L135-L176
train
mardix/Mocha
mocha/decorators.py
cors
def cors(*args, **kwargs): """ A wrapper around flask-cors cross_origin, to also act on classes **An extra note about cors, a response must be available before the cors is applied. Dynamic return is applied after the fact, so use the decorators, json, xml, or return self.render() for txt/html i...
python
def cors(*args, **kwargs): """ A wrapper around flask-cors cross_origin, to also act on classes **An extra note about cors, a response must be available before the cors is applied. Dynamic return is applied after the fact, so use the decorators, json, xml, or return self.render() for txt/html i...
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A wrapper around flask-cors cross_origin, to also act on classes **An extra note about cors, a response must be available before the cors is applied. Dynamic return is applied after the fact, so use the decorators, json, xml, or return self.render() for txt/html ie: @cors() class Index(Mocha): ...
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bce481cb31a0972061dd99bc548701411dcb9de3
https://github.com/mardix/Mocha/blob/bce481cb31a0972061dd99bc548701411dcb9de3/mocha/decorators.py#L42-L78
train
Kortemme-Lab/klab
klab/bio/clustalo.py
SequenceAligner.get_residue_mapping
def get_residue_mapping(self): '''Returns a mapping between the sequences ONLY IF there are exactly two. This restriction makes the code much simpler.''' if len(self.sequence_ids) == 2: if not self.alignment_output: self.align() assert(self.alignment_output) ...
python
def get_residue_mapping(self): '''Returns a mapping between the sequences ONLY IF there are exactly two. This restriction makes the code much simpler.''' if len(self.sequence_ids) == 2: if not self.alignment_output: self.align() assert(self.alignment_output) ...
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L224-L232
train
Kortemme-Lab/klab
klab/bio/clustalo.py
PDBUniParcSequenceAligner.realign
def realign(self, cut_off, chains_to_skip = set()): ''' Alter the cut-off and run alignment again. This is much quicker than creating a new PDBUniParcSequenceAligner object as the UniParcEntry creation etc. in the constructor does not need to be repeated. The chains_to_skip argument (a ...
python
def realign(self, cut_off, chains_to_skip = set()): ''' Alter the cut-off and run alignment again. This is much quicker than creating a new PDBUniParcSequenceAligner object as the UniParcEntry creation etc. in the constructor does not need to be repeated. The chains_to_skip argument (a ...
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Alter the cut-off and run alignment again. This is much quicker than creating a new PDBUniParcSequenceAligner object as the UniParcEntry creation etc. in the constructor does not need to be repeated. The chains_to_skip argument (a Set) allows us to skip chains that were already matched which sp...
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L527-L550
train
Kortemme-Lab/klab
klab/bio/clustalo.py
PDBUniParcSequenceAligner._determine_representative_chains
def _determine_representative_chains(self): ''' Quotient the chains to get equivalence classes of chains. These will be used for the actual mapping.''' # todo: This logic should be moved into the FASTA class or a more general module (maybe a fast exists which uses a C/C++ library?) but at present it is ...
python
def _determine_representative_chains(self): ''' Quotient the chains to get equivalence classes of chains. These will be used for the actual mapping.''' # todo: This logic should be moved into the FASTA class or a more general module (maybe a fast exists which uses a C/C++ library?) but at present it is ...
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Quotient the chains to get equivalence classes of chains. These will be used for the actual mapping.
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L569-L597
train
Kortemme-Lab/klab
klab/bio/clustalo.py
PDBUniParcSequenceAligner._get_uniparc_sequences_through_uniprot_ACs
def _get_uniparc_sequences_through_uniprot_ACs(self, mapping_pdb_id, uniprot_ACs, cache_dir): '''Get the UniParc sequences associated with the UniProt accession number.''' # Map the UniProt ACs to the UniParc IDs m = uniprot_map('ACC', 'UPARC', uniprot_ACs, cache_dir = cache_dir) UniPar...
python
def _get_uniparc_sequences_through_uniprot_ACs(self, mapping_pdb_id, uniprot_ACs, cache_dir): '''Get the UniParc sequences associated with the UniProt accession number.''' # Map the UniProt ACs to the UniParc IDs m = uniprot_map('ACC', 'UPARC', uniprot_ACs, cache_dir = cache_dir) UniPar...
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Get the UniParc sequences associated with the UniProt accession number.
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L664-L679
train
Kortemme-Lab/klab
klab/bio/clustalo.py
PDBUniParcSequenceAligner._align_with_substrings
def _align_with_substrings(self, chains_to_skip = set()): '''Simple substring-based matching''' for c in self.representative_chains: # Skip specified chains if c not in chains_to_skip: #colortext.pcyan(c) #colortext.warning(self.fasta[c]) ...
python
def _align_with_substrings(self, chains_to_skip = set()): '''Simple substring-based matching''' for c in self.representative_chains: # Skip specified chains if c not in chains_to_skip: #colortext.pcyan(c) #colortext.warning(self.fasta[c]) ...
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Simple substring-based matching
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L737-L791
train
Kortemme-Lab/klab
klab/bio/clustalo.py
PDBUniParcSequenceAligner._get_residue_mapping
def _get_residue_mapping(self, chains_to_skip = set()): '''Creates a mapping between the residues of the chains and the associated UniParc entries.''' for c in self.representative_chains: # Skip specified chains if c not in chains_to_skip: if self.alignment.get(c)...
python
def _get_residue_mapping(self, chains_to_skip = set()): '''Creates a mapping between the residues of the chains and the associated UniParc entries.''' for c in self.representative_chains: # Skip specified chains if c not in chains_to_skip: if self.alignment.get(c)...
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L833-L860
train
Kortemme-Lab/klab
klab/bio/clustalo.py
SIFTSChainMutatorSequenceAligner.get_corresponding_chains
def get_corresponding_chains(self, from_pdb_id, from_chain_id, to_pdb_id): '''Should be called after get_mutations.''' chains = self.chain_map.get(from_pdb_id, {}).get(from_chain_id, {}).get(to_pdb_id, []) return sorted(chains)
python
def get_corresponding_chains(self, from_pdb_id, from_chain_id, to_pdb_id): '''Should be called after get_mutations.''' chains = self.chain_map.get(from_pdb_id, {}).get(from_chain_id, {}).get(to_pdb_id, []) return sorted(chains)
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Should be called after get_mutations.
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L1281-L1284
train
Kortemme-Lab/klab
klab/bio/clustalo.py
SIFTSChainMutatorSequenceAligner.get_chain_mutations
def get_chain_mutations(self, pdb_id_1, chain_1, pdb_id_2, chain_2): '''Returns a list of tuples each containing a SEQRES Mutation object and an ATOM Mutation object representing the mutations from pdb_id_1, chain_1 to pdb_id_2, chain_2. SequenceMaps are constructed in this function betwe...
python
def get_chain_mutations(self, pdb_id_1, chain_1, pdb_id_2, chain_2): '''Returns a list of tuples each containing a SEQRES Mutation object and an ATOM Mutation object representing the mutations from pdb_id_1, chain_1 to pdb_id_2, chain_2. SequenceMaps are constructed in this function betwe...
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Returns a list of tuples each containing a SEQRES Mutation object and an ATOM Mutation object representing the mutations from pdb_id_1, chain_1 to pdb_id_2, chain_2. SequenceMaps are constructed in this function between the chains based on the alignment. PDBMutationPair are returned a...
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/clustalo.py#L1287-L1373
train
Kortemme-Lab/klab
klab/rosetta/map_pdb_residues.py
get_mapping_from_db3_file
def get_mapping_from_db3_file( db_path ): ''' Does the work of reading the Rosetta SQLite3 .db3 file to retrieve the mapping ''' import sqlite3 # should be moved to the top but we do this here for CentOS 5 support conn = sqlite3.connect(db_path) results = conn.cursor().execute(''' SELECT ch...
python
def get_mapping_from_db3_file( db_path ): ''' Does the work of reading the Rosetta SQLite3 .db3 file to retrieve the mapping ''' import sqlite3 # should be moved to the top but we do this here for CentOS 5 support conn = sqlite3.connect(db_path) results = conn.cursor().execute(''' SELECT ch...
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Does the work of reading the Rosetta SQLite3 .db3 file to retrieve the mapping
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/rosetta/map_pdb_residues.py#L128-L152
train
Kortemme-Lab/klab
klab/google/gcalendar.py
GoogleCalendar.add_company_quarter
def add_company_quarter(self, company_name, quarter_name, dt, calendar_id = 'notices'): '''Adds a company_name quarter event to the calendar. dt should be a date object. Returns True if the event was added.''' assert(calendar_id in self.configured_calendar_ids.keys()) calendarId = self.configur...
python
def add_company_quarter(self, company_name, quarter_name, dt, calendar_id = 'notices'): '''Adds a company_name quarter event to the calendar. dt should be a date object. Returns True if the event was added.''' assert(calendar_id in self.configured_calendar_ids.keys()) calendarId = self.configur...
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Adds a company_name quarter event to the calendar. dt should be a date object. Returns True if the event was added.
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6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/google/gcalendar.py#L393-L438
train
uogbuji/versa
tools/py/driver/sqlite.py
connection.create_space
def create_space(self): '''Set up a new table space for the first time''' cur = self._conn.cursor() cur.executescript(SQL_MODEL) self._conn.commit() cur.close() return
python
def create_space(self): '''Set up a new table space for the first time''' cur = self._conn.cursor() cur.executescript(SQL_MODEL) self._conn.commit() cur.close() return
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Set up a new table space for the first time
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f092ffc7ed363a5b170890955168500f32de0dd5
https://github.com/uogbuji/versa/blob/f092ffc7ed363a5b170890955168500f32de0dd5/tools/py/driver/sqlite.py#L31-L37
train
uogbuji/versa
tools/py/driver/sqlite.py
connection.drop_space
def drop_space(self): '''Dismantle an existing table space''' cur = self._conn.cursor() cur.executescript(DROP_SQL_MODEL) self._conn.commit() cur.close() return
python
def drop_space(self): '''Dismantle an existing table space''' cur = self._conn.cursor() cur.executescript(DROP_SQL_MODEL) self._conn.commit() cur.close() return
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Dismantle an existing table space
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f092ffc7ed363a5b170890955168500f32de0dd5
https://github.com/uogbuji/versa/blob/f092ffc7ed363a5b170890955168500f32de0dd5/tools/py/driver/sqlite.py#L39-L45
train
Ceasar/twosheds
twosheds/cli.py
CommandLineInterface.eval
def eval(self, text): """Respond to text entered by the user. :param text: the user's input """ program = Program(text, echo=self.echo, transforms=self.transforms) tokens = program.gen_tokens() for sentence in program.gen_sentences(tokens, self.aliases): if s...
python
def eval(self, text): """Respond to text entered by the user. :param text: the user's input """ program = Program(text, echo=self.echo, transforms=self.transforms) tokens = program.gen_tokens() for sentence in program.gen_sentences(tokens, self.aliases): if s...
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Respond to text entered by the user. :param text: the user's input
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55b0a207e3a06b85e9a9567069b3822a651501a7
https://github.com/Ceasar/twosheds/blob/55b0a207e3a06b85e9a9567069b3822a651501a7/twosheds/cli.py#L36-L46
train
Ceasar/twosheds
twosheds/cli.py
CommandLineInterface.interact
def interact(self): """Get a command from the user and respond to it.""" lines = "" for line in self.read(): lines += line try: self.eval(lines) except ValueError: pass except KeyboardInterrupt as e: ...
python
def interact(self): """Get a command from the user and respond to it.""" lines = "" for line in self.read(): lines += line try: self.eval(lines) except ValueError: pass except KeyboardInterrupt as e: ...
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Get a command from the user and respond to it.
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55b0a207e3a06b85e9a9567069b3822a651501a7
https://github.com/Ceasar/twosheds/blob/55b0a207e3a06b85e9a9567069b3822a651501a7/twosheds/cli.py#L48-L63
train
Ceasar/twosheds
twosheds/cli.py
CommandLineInterface.serve_forever
def serve_forever(self, banner=None): """Handle one interaction at a time until shutdown. :param banner: (optional) the banner to print before the first interaction. Defaults to ``None``. """ if banner: print(banner) while True: try...
python
def serve_forever(self, banner=None): """Handle one interaction at a time until shutdown. :param banner: (optional) the banner to print before the first interaction. Defaults to ``None``. """ if banner: print(banner) while True: try...
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Handle one interaction at a time until shutdown. :param banner: (optional) the banner to print before the first interaction. Defaults to ``None``.
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55b0a207e3a06b85e9a9567069b3822a651501a7
https://github.com/Ceasar/twosheds/blob/55b0a207e3a06b85e9a9567069b3822a651501a7/twosheds/cli.py#L65-L80
train
TheGhouls/oct
oct/utilities/run.py
process_results
def process_results(output_dir, config): """Process results and output them """ print('\nanalyzing results...\n') res = output_results(output_dir, config) if res: print('created: %s/results.html\n' % output_dir) else: print('results cannot be processed')
python
def process_results(output_dir, config): """Process results and output them """ print('\nanalyzing results...\n') res = output_results(output_dir, config) if res: print('created: %s/results.html\n' % output_dir) else: print('results cannot be processed')
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Process results and output them
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7e9bddeb3b8495a26442b1c86744e9fb187fe88f
https://github.com/TheGhouls/oct/blob/7e9bddeb3b8495a26442b1c86744e9fb187fe88f/oct/utilities/run.py#L14-L22
train
TheGhouls/oct
oct/utilities/run.py
copy_config
def copy_config(project_path, output_dir): """Copy current config file to output directory """ project_config = os.path.join(project_path, 'config.json') saved_config = os.path.join(output_dir, 'config.json') shutil.copy(project_config, saved_config)
python
def copy_config(project_path, output_dir): """Copy current config file to output directory """ project_config = os.path.join(project_path, 'config.json') saved_config = os.path.join(output_dir, 'config.json') shutil.copy(project_config, saved_config)
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Copy current config file to output directory
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7e9bddeb3b8495a26442b1c86744e9fb187fe88f
https://github.com/TheGhouls/oct/blob/7e9bddeb3b8495a26442b1c86744e9fb187fe88f/oct/utilities/run.py#L25-L30
train
TheGhouls/oct
oct/utilities/run.py
start_hq
def start_hq(output_dir, config, topic, is_master=True, **kwargs): """Start a HQ """ HightQuarter = get_hq_class(config.get('hq_class')) hq = HightQuarter(output_dir, config, topic, **kwargs) hq.setup() if is_master: hq.wait_turrets(config.get("min_turrets", 1)) hq.run() hq.tear_...
python
def start_hq(output_dir, config, topic, is_master=True, **kwargs): """Start a HQ """ HightQuarter = get_hq_class(config.get('hq_class')) hq = HightQuarter(output_dir, config, topic, **kwargs) hq.setup() if is_master: hq.wait_turrets(config.get("min_turrets", 1)) hq.run() hq.tear_...
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Start a HQ
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7e9bddeb3b8495a26442b1c86744e9fb187fe88f
https://github.com/TheGhouls/oct/blob/7e9bddeb3b8495a26442b1c86744e9fb187fe88f/oct/utilities/run.py#L33-L42
train
TheGhouls/oct
oct/utilities/run.py
generate_output_path
def generate_output_path(args, project_path): """Generate default output directory """ milisec = datetime.now().microsecond dirname = 'results_{}_{}'.format(time.strftime('%Y.%m.%d_%H.%M.%S', time.localtime()), str(milisec)) return os.path.join(project_path, 'results', dirname)
python
def generate_output_path(args, project_path): """Generate default output directory """ milisec = datetime.now().microsecond dirname = 'results_{}_{}'.format(time.strftime('%Y.%m.%d_%H.%M.%S', time.localtime()), str(milisec)) return os.path.join(project_path, 'results', dirname)
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Generate default output directory
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7e9bddeb3b8495a26442b1c86744e9fb187fe88f
https://github.com/TheGhouls/oct/blob/7e9bddeb3b8495a26442b1c86744e9fb187fe88f/oct/utilities/run.py#L45-L50
train
TheGhouls/oct
oct/utilities/run.py
run
def run(args): """Start an oct project :param Namespace args: the commande-line arguments """ kwargs = vars(args) if 'func' in kwargs: del kwargs['func'] project_path = kwargs.pop('project_path') config = configure(project_path, kwargs.get('config_file')) output_dir = kwargs....
python
def run(args): """Start an oct project :param Namespace args: the commande-line arguments """ kwargs = vars(args) if 'func' in kwargs: del kwargs['func'] project_path = kwargs.pop('project_path') config = configure(project_path, kwargs.get('config_file')) output_dir = kwargs....
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Start an oct project :param Namespace args: the commande-line arguments
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7e9bddeb3b8495a26442b1c86744e9fb187fe88f
https://github.com/TheGhouls/oct/blob/7e9bddeb3b8495a26442b1c86744e9fb187fe88f/oct/utilities/run.py#L53-L79
train
projectshift/shift-boiler
boiler/user/views_profile.py
guest_access
def guest_access(func): """ Guest access decorator Checks if public profiles option is enabled in config and checks access to profile pages based on that. """ def decorated(*_, **kwargs): public_profiles = current_app.config['USER_PUBLIC_PROFILES'] if not public_profiles: ...
python
def guest_access(func): """ Guest access decorator Checks if public profiles option is enabled in config and checks access to profile pages based on that. """ def decorated(*_, **kwargs): public_profiles = current_app.config['USER_PUBLIC_PROFILES'] if not public_profiles: ...
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Guest access decorator Checks if public profiles option is enabled in config and checks access to profile pages based on that.
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/views_profile.py#L24-L39
train
projectshift/shift-boiler
boiler/user/views_profile.py
only_owner
def only_owner(func): """ Only owner decorator Restricts access to view ony to profile owner """ def decorated(*_, **kwargs): id = kwargs['id'] if not current_user.is_authenticated: abort(401) elif current_user.id != id: abort(403) return func(...
python
def only_owner(func): """ Only owner decorator Restricts access to view ony to profile owner """ def decorated(*_, **kwargs): id = kwargs['id'] if not current_user.is_authenticated: abort(401) elif current_user.id != id: abort(403) return func(...
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Only owner decorator Restricts access to view ony to profile owner
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/views_profile.py#L42-L55
train
CodersOfTheNight/oshino
oshino/config.py
load
def load(config_file): """ Processes and loads config file. """ with open(config_file, "r") as f: def env_get(): return dict(os.environ) tmpl = Template(f.read()) return Config(yaml.load(tmpl.render(**env_get())))
python
def load(config_file): """ Processes and loads config file. """ with open(config_file, "r") as f: def env_get(): return dict(os.environ) tmpl = Template(f.read()) return Config(yaml.load(tmpl.render(**env_get())))
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Processes and loads config file.
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00f7e151e3ce1f3a7f43b353b695c4dba83c7f28
https://github.com/CodersOfTheNight/oshino/blob/00f7e151e3ce1f3a7f43b353b695c4dba83c7f28/oshino/config.py#L180-L189
train
uw-it-aca/uw-restclients-sws
uw_sws/term.py
get_term_by_year_and_quarter
def get_term_by_year_and_quarter(year, quarter): """ Returns a uw_sws.models.Term object, for the passed year and quarter. """ url = "{}/{},{}.json".format( term_res_url_prefix, year, quarter.lower()) return _json_to_term_model(get_resource(url))
python
def get_term_by_year_and_quarter(year, quarter): """ Returns a uw_sws.models.Term object, for the passed year and quarter. """ url = "{}/{},{}.json".format( term_res_url_prefix, year, quarter.lower()) return _json_to_term_model(get_resource(url))
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4d36776dcca36855fc15c1b8fe7650ae045194cf
https://github.com/uw-it-aca/uw-restclients-sws/blob/4d36776dcca36855fc15c1b8fe7650ae045194cf/uw_sws/term.py#L15-L22
train
uw-it-aca/uw-restclients-sws
uw_sws/term.py
get_current_term
def get_current_term(): """ Returns a uw_sws.models.Term object, for the current term. """ url = "{}/current.json".format(term_res_url_prefix) term = _json_to_term_model(get_resource(url)) # A term doesn't become "current" until 2 days before the start of # classes. That's too late to ...
python
def get_current_term(): """ Returns a uw_sws.models.Term object, for the current term. """ url = "{}/current.json".format(term_res_url_prefix) term = _json_to_term_model(get_resource(url)) # A term doesn't become "current" until 2 days before the start of # classes. That's too late to ...
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Returns a uw_sws.models.Term object, for the current term.
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4d36776dcca36855fc15c1b8fe7650ae045194cf
https://github.com/uw-it-aca/uw-restclients-sws/blob/4d36776dcca36855fc15c1b8fe7650ae045194cf/uw_sws/term.py#L25-L39
train
uw-it-aca/uw-restclients-sws
uw_sws/term.py
get_term_before
def get_term_before(aterm): """ Returns a uw_sws.models.Term object, for the term before the term given. """ prev_year = aterm.year prev_quarter = QUARTER_SEQ[QUARTER_SEQ.index(aterm.quarter) - 1] if prev_quarter == "autumn": prev_year -= 1 return get_term_by_year_and_quarter(p...
python
def get_term_before(aterm): """ Returns a uw_sws.models.Term object, for the term before the term given. """ prev_year = aterm.year prev_quarter = QUARTER_SEQ[QUARTER_SEQ.index(aterm.quarter) - 1] if prev_quarter == "autumn": prev_year -= 1 return get_term_by_year_and_quarter(p...
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Returns a uw_sws.models.Term object, for the term before the term given.
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4d36776dcca36855fc15c1b8fe7650ae045194cf
https://github.com/uw-it-aca/uw-restclients-sws/blob/4d36776dcca36855fc15c1b8fe7650ae045194cf/uw_sws/term.py#L60-L71
train
uw-it-aca/uw-restclients-sws
uw_sws/term.py
get_term_after
def get_term_after(aterm): """ Returns a uw_sws.models.Term object, for the term after the term given. """ next_year = aterm.year if aterm.quarter == "autumn": next_quarter = QUARTER_SEQ[0] else: next_quarter = QUARTER_SEQ[QUARTER_SEQ.index(aterm.quarter) + 1] if next_qu...
python
def get_term_after(aterm): """ Returns a uw_sws.models.Term object, for the term after the term given. """ next_year = aterm.year if aterm.quarter == "autumn": next_quarter = QUARTER_SEQ[0] else: next_quarter = QUARTER_SEQ[QUARTER_SEQ.index(aterm.quarter) + 1] if next_qu...
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Returns a uw_sws.models.Term object, for the term after the term given.
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4d36776dcca36855fc15c1b8fe7650ae045194cf
https://github.com/uw-it-aca/uw-restclients-sws/blob/4d36776dcca36855fc15c1b8fe7650ae045194cf/uw_sws/term.py#L74-L88
train
uw-it-aca/uw-restclients-sws
uw_sws/term.py
get_term_by_date
def get_term_by_date(date): """ Returns a term for the datetime.date object given. """ year = date.year term = None for quarter in ('autumn', 'summer', 'spring', 'winter'): term = get_term_by_year_and_quarter(year, quarter) if date >= term.first_day_quarter: break ...
python
def get_term_by_date(date): """ Returns a term for the datetime.date object given. """ year = date.year term = None for quarter in ('autumn', 'summer', 'spring', 'winter'): term = get_term_by_year_and_quarter(year, quarter) if date >= term.first_day_quarter: break ...
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Returns a term for the datetime.date object given.
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4d36776dcca36855fc15c1b8fe7650ae045194cf
https://github.com/uw-it-aca/uw-restclients-sws/blob/4d36776dcca36855fc15c1b8fe7650ae045194cf/uw_sws/term.py#L91-L118
train
projectshift/shift-boiler
boiler/feature/logging.py
logging_feature
def logging_feature(app): """ Add logging Accepts flask application and registers logging functionality within it """ # this is important because otherwise only log warn, err and crit app.logger.setLevel(logging.INFO) # enable loggers email_exceptions = app.config.get('LOGGING_EMAIL_EX...
python
def logging_feature(app): """ Add logging Accepts flask application and registers logging functionality within it """ # this is important because otherwise only log warn, err and crit app.logger.setLevel(logging.INFO) # enable loggers email_exceptions = app.config.get('LOGGING_EMAIL_EX...
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Add logging Accepts flask application and registers logging functionality within it
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/feature/logging.py#L6-L24
train
jreese/aioslack
aioslack/core.py
Slack.rtm
async def rtm(self) -> AsyncIterator[Event]: """Connect to the realtime event API and start yielding events.""" response = cast(RTMStart, await self.api("rtm.start")) self.me = Auto.generate(response.self_, "Me", recursive=False) self.team = Auto.generate(response.team, "Team", recursiv...
python
async def rtm(self) -> AsyncIterator[Event]: """Connect to the realtime event API and start yielding events.""" response = cast(RTMStart, await self.api("rtm.start")) self.me = Auto.generate(response.self_, "Me", recursive=False) self.team = Auto.generate(response.team, "Team", recursiv...
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Connect to the realtime event API and start yielding events.
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5e705f557dde9e81903d84ffb2896ec0a074ad5c
https://github.com/jreese/aioslack/blob/5e705f557dde9e81903d84ffb2896ec0a074ad5c/aioslack/core.py#L79-L101
train
eventbrite/rebar
src/rebar/group.py
FormGroup._apply
def _apply(self, method_name, *args, **kwargs): """Call ``method_name`` with args and kwargs on each member. Returns a sequence of return values. """ return [ getattr(member, method_name)(*args, **kwargs) for member in self.forms ]
python
def _apply(self, method_name, *args, **kwargs): """Call ``method_name`` with args and kwargs on each member. Returns a sequence of return values. """ return [ getattr(member, method_name)(*args, **kwargs) for member in self.forms ]
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32f8914a2c5529519009d21c85f0d47cc6601901
https://github.com/eventbrite/rebar/blob/32f8914a2c5529519009d21c85f0d47cc6601901/src/rebar/group.py#L115-L125
train
eventbrite/rebar
src/rebar/group.py
FormGroup.html_id
def html_id(self, field_name, form=None): """Return the html ID for the given field_name.""" if form is None: form = self return form.auto_id % (form.add_prefix(field_name),)
python
def html_id(self, field_name, form=None): """Return the html ID for the given field_name.""" if form is None: form = self return form.auto_id % (form.add_prefix(field_name),)
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Return the html ID for the given field_name.
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32f8914a2c5529519009d21c85f0d47cc6601901
https://github.com/eventbrite/rebar/blob/32f8914a2c5529519009d21c85f0d47cc6601901/src/rebar/group.py#L136-L142
train
eventbrite/rebar
src/rebar/group.py
FormGroup.save
def save(self): """Save the changes to the instance and any related objects.""" # first call save with commit=False for all Forms for form in self._forms: if isinstance(form, BaseForm): form.save(commit=False) # call save on the instance self.instanc...
python
def save(self): """Save the changes to the instance and any related objects.""" # first call save with commit=False for all Forms for form in self._forms: if isinstance(form, BaseForm): form.save(commit=False) # call save on the instance self.instanc...
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Save the changes to the instance and any related objects.
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32f8914a2c5529519009d21c85f0d47cc6601901
https://github.com/eventbrite/rebar/blob/32f8914a2c5529519009d21c85f0d47cc6601901/src/rebar/group.py#L208-L232
train
brunato/lograptor
lograptor/report.py
ReportData.make_csv
def make_csv(self): """ Get the text representation of a report element as csv. """ import csv try: from StringIO import StringIO # Python 2.7 except ImportError: from io import StringIO out = StringIO() writer = csv.writer(out, d...
python
def make_csv(self): """ Get the text representation of a report element as csv. """ import csv try: from StringIO import StringIO # Python 2.7 except ImportError: from io import StringIO out = StringIO() writer = csv.writer(out, d...
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Get the text representation of a report element as csv.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L360-L397
train
brunato/lograptor
lograptor/report.py
Subreport.make
def make(self, apps): """ Make subreport items from results. """ for (appname, app) in sorted(apps.items(), key=lambda x: (x[1].priority, x[0])): logger.info('Getting report results from %r', appname) for report_data in app.report_data: if report_...
python
def make(self, apps): """ Make subreport items from results. """ for (appname, app) in sorted(apps.items(), key=lambda x: (x[1].priority, x[0])): logger.info('Getting report results from %r', appname) for report_data in app.report_data: if report_...
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Make subreport items from results.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L420-L493
train
brunato/lograptor
lograptor/report.py
Subreport.make_format
def make_format(self, fmt, width): """ Make subreport text in a specified format """ if not self.report_data: return for data_item in self.report_data: if data_item.results: if fmt is None or fmt == 'text': ...
python
def make_format(self, fmt, width): """ Make subreport text in a specified format """ if not self.report_data: return for data_item in self.report_data: if data_item.results: if fmt is None or fmt == 'text': ...
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Make subreport text in a specified format
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L495-L509
train
brunato/lograptor
lograptor/report.py
Subreport.compact_tables
def compact_tables(self): """ Compact report items of type "table" with same results type. Report items of type "tables" in the same subreport is merged into one. The data are ordered by 1st column. """ items_to_del = set() for i in range(len(self.report_data)): ...
python
def compact_tables(self): """ Compact report items of type "table" with same results type. Report items of type "tables" in the same subreport is merged into one. The data are ordered by 1st column. """ items_to_del = set() for i in range(len(self.report_data)): ...
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Compact report items of type "table" with same results type. Report items of type "tables" in the same subreport is merged into one. The data are ordered by 1st column.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L511-L530
train
brunato/lograptor
lograptor/report.py
Report.make
def make(self, apps): """ Create the report from application results """ for subreport in self.subreports: logger.debug('Make subreport "{0}"'.format(subreport.name)) subreport.make(apps) for subreport in self.subreports: subreport.compact_tab...
python
def make(self, apps): """ Create the report from application results """ for subreport in self.subreports: logger.debug('Make subreport "{0}"'.format(subreport.name)) subreport.make(apps) for subreport in self.subreports: subreport.compact_tab...
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Create the report from application results
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L566-L575
train
brunato/lograptor
lograptor/report.py
Report.get_report_parts
def get_report_parts(self, apps, formats): """ Make report item texts in a specified format. """ for fmt in formats: width = 100 if fmt is not None else tui.get_terminal_size()[0] for sr in self.subreports: sr.make_format(fmt, width) logge...
python
def get_report_parts(self, apps, formats): """ Make report item texts in a specified format. """ for fmt in formats: width = 100 if fmt is not None else tui.get_terminal_size()[0] for sr in self.subreports: sr.make_format(fmt, width) logge...
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Make report item texts in a specified format.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L580-L622
train
brunato/lograptor
lograptor/report.py
Report.set_stats
def set_stats(self, run_stats): """ Set run statistics for the report. """ self.stats = run_stats.copy() self.stats['files'] = ', '.join(self.stats['files']) self.stats['tot_files'] = len(run_stats['files']) self.stats['extra_tags'] = ', '.join(self.stats['extra_t...
python
def set_stats(self, run_stats): """ Set run statistics for the report. """ self.stats = run_stats.copy() self.stats['files'] = ', '.join(self.stats['files']) self.stats['tot_files'] = len(run_stats['files']) self.stats['extra_tags'] = ', '.join(self.stats['extra_t...
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Set run statistics for the report.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L630-L637
train
brunato/lograptor
lograptor/report.py
Report.make_html_page
def make_html_page(self, valumap): """ Builds the report as html page, using the template page from file. """ logger.info('Making an html report using template %r.', self.html_template) fh = open(self.html_template) template = fh.read() fh.close() parts =...
python
def make_html_page(self, valumap): """ Builds the report as html page, using the template page from file. """ logger.info('Making an html report using template %r.', self.html_template) fh = open(self.html_template) template = fh.read() fh.close() parts =...
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Builds the report as html page, using the template page from file.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L639-L658
train
brunato/lograptor
lograptor/report.py
Report.make_text_page
def make_text_page(self, valumap): """ Builds the report as text page, using the template page from file. """ logger.info('Making a text report page using template %r.', self.text_template) fh = open(self.text_template) template = fh.read() fh.close() ...
python
def make_text_page(self, valumap): """ Builds the report as text page, using the template page from file. """ logger.info('Making a text report page using template %r.', self.text_template) fh = open(self.text_template) template = fh.read() fh.close() ...
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Builds the report as text page, using the template page from file.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L660-L678
train
brunato/lograptor
lograptor/report.py
Report.make_csv_tables
def make_csv_tables(self): """ Builds the report as a list of csv tables with titles. """ logger.info('Generate csv report tables') report_parts = [] for sr in self.subreports: for data_item in sr.report_data: report_parts.append(TextPart(fmt='...
python
def make_csv_tables(self): """ Builds the report as a list of csv tables with titles. """ logger.info('Generate csv report tables') report_parts = [] for sr in self.subreports: for data_item in sr.report_data: report_parts.append(TextPart(fmt='...
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Builds the report as a list of csv tables with titles.
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/lograptor/report.py#L680-L689
train
projectshift/shift-boiler
boiler/collections/paginated_collection.py
PaginatedCollection.fetch_items
def fetch_items(self): """ Fetch items Performs a query to retrieve items based on current query and pagination settings. """ offset = self.per_page * (self.page - 1) items = self._query.limit(self.per_page).offset(offset).all() return items
python
def fetch_items(self): """ Fetch items Performs a query to retrieve items based on current query and pagination settings. """ offset = self.per_page * (self.page - 1) items = self._query.limit(self.per_page).offset(offset).all() return items
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Fetch items Performs a query to retrieve items based on current query and pagination settings.
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/collections/paginated_collection.py#L66-L74
train
projectshift/shift-boiler
boiler/collections/paginated_collection.py
PaginatedCollection.next_page
def next_page(self): """ Next page Uses query object to fetch next slice of items unless on last page in which case does nothing """ if self.is_last_page(): return False self.page += 1 self.items = self.fetch_items() return True
python
def next_page(self): """ Next page Uses query object to fetch next slice of items unless on last page in which case does nothing """ if self.is_last_page(): return False self.page += 1 self.items = self.fetch_items() return True
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Next page Uses query object to fetch next slice of items unless on last page in which case does nothing
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/collections/paginated_collection.py#L96-L107
train
projectshift/shift-boiler
boiler/collections/paginated_collection.py
PaginatedCollection.previous_page
def previous_page(self): """ Previous page Uses query object to fetch previous slice of items unless on first page in which case does nothing """ if self.is_first_page(): return False self.page -= 1 self.items = self.fetch_items() retu...
python
def previous_page(self): """ Previous page Uses query object to fetch previous slice of items unless on first page in which case does nothing """ if self.is_first_page(): return False self.page -= 1 self.items = self.fetch_items() retu...
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Previous page Uses query object to fetch previous slice of items unless on first page in which case does nothing
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/collections/paginated_collection.py#L109-L120
train
brunato/lograptor
setup.py
my_bdist_rpm._make_spec_file
def _make_spec_file(self): """ Customize spec file inserting %config section """ spec_file = setuptools.command.bdist_rpm.bdist_rpm._make_spec_file(self) spec_file.append('%config(noreplace) /etc/lograptor/lograptor.conf') spec_file.append('%config(noreplace) /etc/lograpt...
python
def _make_spec_file(self): """ Customize spec file inserting %config section """ spec_file = setuptools.command.bdist_rpm.bdist_rpm._make_spec_file(self) spec_file.append('%config(noreplace) /etc/lograptor/lograptor.conf') spec_file.append('%config(noreplace) /etc/lograpt...
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Customize spec file inserting %config section
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b1f09fe1b429ed15110610092704ef12d253f3c9
https://github.com/brunato/lograptor/blob/b1f09fe1b429ed15110610092704ef12d253f3c9/setup.py#L125-L133
train
projectshift/shift-boiler
boiler/user/event_handlers.py
user_save_event
def user_save_event(user): """ Handle persist event for user entities """ msg = 'User ({}){} updated/saved'.format(user.id, user.email) current_app.logger.info(msg)
python
def user_save_event(user): """ Handle persist event for user entities """ msg = 'User ({}){} updated/saved'.format(user.id, user.email) current_app.logger.info(msg)
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Handle persist event for user entities
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/event_handlers.py#L14-L17
train
projectshift/shift-boiler
boiler/user/event_handlers.py
user_got_role_event
def user_got_role_event(user, role): """ User got new role """ msg = 'User ({}){} got new role [{}]' current_app.logger.info(msg.format(user.id, user.email, role.handle))
python
def user_got_role_event(user, role): """ User got new role """ msg = 'User ({}){} got new role [{}]' current_app.logger.info(msg.format(user.id, user.email, role.handle))
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User got new role
[ "User", "got", "new", "role" ]
8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/event_handlers.py#L107-L110
train
projectshift/shift-boiler
boiler/user/models.py
User.generate_hash
def generate_hash(self, length=30): """ Generate random string of given length """ import random, string chars = string.ascii_letters + string.digits ran = random.SystemRandom().choice hash = ''.join(ran(chars) for i in range(length)) return hash
python
def generate_hash(self, length=30): """ Generate random string of given length """ import random, string chars = string.ascii_letters + string.digits ran = random.SystemRandom().choice hash = ''.join(ran(chars) for i in range(length)) return hash
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Generate random string of given length
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L163-L169
train
projectshift/shift-boiler
boiler/user/models.py
User.gravatar
def gravatar(self, size): """ Get url to gravatar """ hash = md5(self.email.encode('utf-8')).hexdigest() url = 'http://www.gravatar.com/avatar/{}?d=mm&s={}' return url.format(hash, size)
python
def gravatar(self, size): """ Get url to gravatar """ hash = md5(self.email.encode('utf-8')).hexdigest() url = 'http://www.gravatar.com/avatar/{}?d=mm&s={}' return url.format(hash, size)
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Get url to gravatar
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L171-L175
train
projectshift/shift-boiler
boiler/user/models.py
User.is_locked
def is_locked(self): """ Is locked? Checks locking and possibly unlocks upon timeout if account was previously locked. """ now = datetime.datetime.utcnow() if self.locked_until and self.locked_until >= now: return True elif self.locked_until an...
python
def is_locked(self): """ Is locked? Checks locking and possibly unlocks upon timeout if account was previously locked. """ now = datetime.datetime.utcnow() if self.locked_until and self.locked_until >= now: return True elif self.locked_until an...
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Is locked? Checks locking and possibly unlocks upon timeout if account was previously locked.
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L200-L213
train
projectshift/shift-boiler
boiler/user/models.py
User.lock_account
def lock_account(self, minutes=30): """ Lock user account for a period """ period = datetime.timedelta(minutes=minutes) self.locked_until = datetime.datetime.utcnow() + period
python
def lock_account(self, minutes=30): """ Lock user account for a period """ period = datetime.timedelta(minutes=minutes) self.locked_until = datetime.datetime.utcnow() + period
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Lock user account for a period
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L215-L218
train
projectshift/shift-boiler
boiler/user/models.py
User.increment_failed_logins
def increment_failed_logins(self): """ Increment failed logins counter""" if not self.failed_logins: self.failed_logins = 1 elif not self.failed_login_limit_reached(): self.failed_logins += 1 else: self.reset_login_counter() self.lock_accou...
python
def increment_failed_logins(self): """ Increment failed logins counter""" if not self.failed_logins: self.failed_logins = 1 elif not self.failed_login_limit_reached(): self.failed_logins += 1 else: self.reset_login_counter() self.lock_accou...
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Increment failed logins counter
[ "Increment", "failed", "logins", "counter" ]
8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L224-L232
train
projectshift/shift-boiler
boiler/user/models.py
User.failed_login_limit_reached
def failed_login_limit_reached(self): """ A boolean method to check for failed login limit being reached""" login_limit = 10 if self.failed_logins and self.failed_logins >= login_limit: return True else: return False
python
def failed_login_limit_reached(self): """ A boolean method to check for failed login limit being reached""" login_limit = 10 if self.failed_logins and self.failed_logins >= login_limit: return True else: return False
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A boolean method to check for failed login limit being reached
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L238-L244
train
projectshift/shift-boiler
boiler/user/models.py
User.email_secure
def email_secure(self): """ Obfuscated email used for display """ email = self._email if not email: return '' address, host = email.split('@') if len(address) <= 2: return ('*' * len(address)) + '@' + host import re host = '@' + host obfuscated = re.sub(r...
python
def email_secure(self): """ Obfuscated email used for display """ email = self._email if not email: return '' address, host = email.split('@') if len(address) <= 2: return ('*' * len(address)) + '@' + host import re host = '@' + host obfuscated = re.sub(r...
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Obfuscated email used for display
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L256-L266
train
projectshift/shift-boiler
boiler/user/models.py
User.email
def email(self, email): """ Set email and generate confirmation """ if email == self.email: return email = email.lower() if self._email is None: self._email = email self.require_email_confirmation() else: self.email_new = email ...
python
def email(self, email): """ Set email and generate confirmation """ if email == self.email: return email = email.lower() if self._email is None: self._email = email self.require_email_confirmation() else: self.email_new = email ...
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Set email and generate confirmation
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L269-L280
train
projectshift/shift-boiler
boiler/user/models.py
User.require_email_confirmation
def require_email_confirmation(self): """ Mark email as unconfirmed""" self.email_confirmed = False self.email_link = self.generate_hash(50) now = datetime.datetime.utcnow() self.email_link_expires = now + datetime.timedelta(hours=24)
python
def require_email_confirmation(self): """ Mark email as unconfirmed""" self.email_confirmed = False self.email_link = self.generate_hash(50) now = datetime.datetime.utcnow() self.email_link_expires = now + datetime.timedelta(hours=24)
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Mark email as unconfirmed
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L282-L287
train
projectshift/shift-boiler
boiler/user/models.py
User.cancel_email_change
def cancel_email_change(self): """ Cancel email change for new users and roll back data """ if not self.email_new: return self.email_new = None self.email_confirmed = True self.email_link = None self.email_new = None self.email_link_expires = None
python
def cancel_email_change(self): """ Cancel email change for new users and roll back data """ if not self.email_new: return self.email_new = None self.email_confirmed = True self.email_link = None self.email_new = None self.email_link_expires = None
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Cancel email change for new users and roll back data
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L299-L308
train
projectshift/shift-boiler
boiler/user/models.py
User.email_link_expired
def email_link_expired(self, now=None): """ Check if email link expired """ if not now: now = datetime.datetime.utcnow() return self.email_link_expires < now
python
def email_link_expired(self, now=None): """ Check if email link expired """ if not now: now = datetime.datetime.utcnow() return self.email_link_expires < now
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Check if email link expired
[ "Check", "if", "email", "link", "expired" ]
8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L310-L313
train
projectshift/shift-boiler
boiler/user/models.py
User.password
def password(self, password): """ Encode a string and set as password """ from boiler.user.util.passlib import passlib_context password = str(password) encrypted = passlib_context.encrypt(password) self._password = encrypted
python
def password(self, password): """ Encode a string and set as password """ from boiler.user.util.passlib import passlib_context password = str(password) encrypted = passlib_context.encrypt(password) self._password = encrypted
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Encode a string and set as password
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L325-L330
train
projectshift/shift-boiler
boiler/user/models.py
User.verify_password
def verify_password(self, password): """ Verify a given string for being valid password """ if self.password is None: return False from boiler.user.util.passlib import passlib_context return passlib_context.verify(str(password), self.password)
python
def verify_password(self, password): """ Verify a given string for being valid password """ if self.password is None: return False from boiler.user.util.passlib import passlib_context return passlib_context.verify(str(password), self.password)
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Verify a given string for being valid password
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L332-L338
train
projectshift/shift-boiler
boiler/user/models.py
User.generate_password_link
def generate_password_link(self): """ Generates a link to reset password """ self.password_link = self.generate_hash(50) now = datetime.datetime.utcnow() self.password_link_expires = now + datetime.timedelta(hours=24)
python
def generate_password_link(self): """ Generates a link to reset password """ self.password_link = self.generate_hash(50) now = datetime.datetime.utcnow() self.password_link_expires = now + datetime.timedelta(hours=24)
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Generates a link to reset password
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8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b
https://github.com/projectshift/shift-boiler/blob/8e6f3a3e4b9493fb6c8bd16bed160ede153bfb0b/boiler/user/models.py#L340-L344
train