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bykof/billomapy | billomapy/billomapy.py | Billomapy.complete_delivery_note | def complete_delivery_note(self, delivery_note_id, complete_dict):
"""
Completes an delivery note
:param complete_dict: the complete dict with the template id
:param delivery_note_id: the delivery note id
:return: Response
"""
return self._create_put_request(
... | python | def complete_delivery_note(self, delivery_note_id, complete_dict):
"""
Completes an delivery note
:param complete_dict: the complete dict with the template id
:param delivery_note_id: the delivery note id
:return: Response
"""
return self._create_put_request(
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bykof/billomapy | billomapy/billomapy.py | Billomapy.delivery_note_pdf | def delivery_note_pdf(self, delivery_note_id):
"""
Opens a pdf of a delivery note
:param delivery_note_id: the delivery note id
:return: dict
"""
return self._create_get_request(resource=DELIVERY_NOTES, billomat_id=delivery_note_id, command=PDF) | python | def delivery_note_pdf(self, delivery_note_id):
"""
Opens a pdf of a delivery note
:param delivery_note_id: the delivery note id
:return: dict
"""
return self._create_get_request(resource=DELIVERY_NOTES, billomat_id=delivery_note_id, command=PDF) | [
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_items_of_delivery_note_per_page | def get_items_of_delivery_note_per_page(self, delivery_note_id, per_page=1000, page=1):
"""
Get items of delivery note per page
:param delivery_note_id: the delivery note id
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
:re... | python | def get_items_of_delivery_note_per_page(self, delivery_note_id, per_page=1000, page=1):
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Get items of delivery note per page
:param delivery_note_id: the delivery note id
:param per_page: How many objects per page. Default: 1000
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_all_items_of_delivery_note | def get_all_items_of_delivery_note(self, delivery_note_id):
"""
Get all items of delivery note
This will iterate over all pages until it gets all elements.
So if the rate limit exceeded it will throw an Exception and you will get nothing
:param delivery_note_id: the delivery not... | python | def get_all_items_of_delivery_note(self, delivery_note_id):
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Get all items of delivery note
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bykof/billomapy | billomapy/billomapy.py | Billomapy.update_delivery_note_item | def update_delivery_note_item(self, delivery_note_item_id, delivery_note_item_dict):
"""
Updates a delivery note item
:param delivery_note_item_id: delivery note item id
:param delivery_note_item_dict: dict
:return: dict
"""
return self._create_put_request(
... | python | def update_delivery_note_item(self, delivery_note_item_id, delivery_note_item_dict):
"""
Updates a delivery note item
:param delivery_note_item_id: delivery note item id
:param delivery_note_item_dict: dict
:return: dict
"""
return self._create_put_request(
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_comments_of_delivery_note_per_page | def get_comments_of_delivery_note_per_page(self, delivery_note_id, per_page=1000, page=1):
"""
Get comments of delivery note per page
:param delivery_note_id: the delivery note
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
... | python | def get_comments_of_delivery_note_per_page(self, delivery_note_id, per_page=1000, page=1):
"""
Get comments of delivery note per page
:param delivery_note_id: the delivery note
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_all_comments_of_delivery_note | def get_all_comments_of_delivery_note(self, delivery_note_id):
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Get all comments of delivery note
This will iterate over all pages until it gets all elements.
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Get all comments of delivery note
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bykof/billomapy | billomapy/billomapy.py | Billomapy.update_delivery_note_comment | def update_delivery_note_comment(self, delivery_note_comment_id, delivery_note_comment_dict):
"""
Updates a delivery note comment
:param delivery_note_comment_id: the delivery note comment id
:param delivery_note_comment_dict: dict
:return: dict
"""
return self._... | python | def update_delivery_note_comment(self, delivery_note_comment_id, delivery_note_comment_dict):
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Updates a delivery note comment
:param delivery_note_comment_id: the delivery note comment id
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_tags_of_delivery_note_per_page | def get_tags_of_delivery_note_per_page(self, delivery_note_id, per_page=1000, page=1):
"""
Get tags of delivery note per page
:param delivery_note_id: the delivery note id
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
:retu... | python | def get_tags_of_delivery_note_per_page(self, delivery_note_id, per_page=1000, page=1):
"""
Get tags of delivery note per page
:param delivery_note_id: the delivery note id
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_all_tags_of_delivery_note | def get_all_tags_of_delivery_note(self, delivery_note_id):
"""
Get all tags of delivery note
This will iterate over all pages until it gets all elements.
So if the rate limit exceeded it will throw an Exception and you will get nothing
:param delivery_note_id: the delivery note ... | python | def get_all_tags_of_delivery_note(self, delivery_note_id):
"""
Get all tags of delivery note
This will iterate over all pages until it gets all elements.
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_letters_per_page | def get_letters_per_page(self, per_page=1000, page=1, params=None):
"""
Get letters per page
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
:param params: Search parameters. Default: {}
:return: list
"""
retu... | python | def get_letters_per_page(self, per_page=1000, page=1, params=None):
"""
Get letters per page
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
:param params: Search parameters. Default: {}
:return: list
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_all_letters | def get_all_letters(self, params=None):
"""
Get all letters
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So if the rate limit exceeded it will throw an Exception and you will get nothing
:param params: search params
:return: list
"""
if no... | python | def get_all_letters(self, params=None):
"""
Get all letters
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:param params: search params
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bykof/billomapy | billomapy/billomapy.py | Billomapy.update_letter | def update_letter(self, letter_id, letter_dict):
"""
Updates a letter
:param letter_id: the letter id
:param letter_dict: dict
:return: dict
"""
return self._create_put_request(
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send_dat... | python | def update_letter(self, letter_id, letter_dict):
"""
Updates a letter
:param letter_id: the letter id
:param letter_dict: dict
:return: dict
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return self._create_put_request(
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_comments_of_letter_per_page | def get_comments_of_letter_per_page(self, letter_id, per_page=1000, page=1):
"""
Get comments of letter per page
:param letter_id: the letter id
:param per_page: How many objects per page. Default: 1000
:param page: Which page. Default: 1
:return: list
"""
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"""
Get comments of letter per page
:param letter_id: the letter id
:param per_page: How many objects per page. Default: 1000
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:param letter_id: the letter id
:return: list
... | python | def get_all_comments_of_letter(self, letter_id):
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bykof/billomapy | billomapy/billomapy.py | Billomapy.update_letter_comment | def update_letter_comment(self, letter_comment_id, letter_comment_dict):
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_tags_of_letter_per_page | def get_tags_of_letter_per_page(self, letter_id, per_page=1000, page=1):
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"""
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_email_templates | def get_email_templates(self, params=None):
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bykof/billomapy | billomapy/billomapy.py | Billomapy.update_email_template | def update_email_template(self, template_id, template_dict):
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"""
return self._create_put_request(
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bykof/billomapy | billomapy/billomapy.py | Billomapy.get_all_templates | def get_all_templates(self, params=None):
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:param template_dict: dict
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"""
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Kortemme-Lab/klab | klab/cloning/cloning.py | reverse_translate | def reverse_translate(
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Kortemme-Lab/klab | klab/cloning/cloning.py | problem_with_codon | def problem_with_codon(codon_index, codon_list, bad_seqs):
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base_1 = 3 * codon_index
base_3 = 3 * codon_index + 2
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Kortemme-Lab/klab | klab/cloning/cloning.py | sequences_from_fasta | def sequences_from_fasta(path):
"""
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Kortemme-Lab/klab | klab/cloning/cloning.py | write_sequences_to_fasta | def write_sequences_to_fasta(path, seqs):
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A mapping of names to sequences, which can be either protein or DNA.
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Create a FASTA file listing the given sequences.
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Kortemme-Lab/klab | klab/cloning/cloning.py | write_sequences_to_xlsx | def write_sequences_to_xlsx(path, seqs):
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Create a XLSX file listing the given sequences.
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berkeley-cocosci/Wallace | wallace/networks.py | DiscreteGenerational.add_node | def add_node(self, node):
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uw-it-aca/uw-restclients-pws | uw_pws/__init__.py | PWS.get_person_by_regid | def get_person_by_regid(self, regid):
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uw-it-aca/uw-restclients-pws | uw_pws/__init__.py | PWS.get_person_by_netid | def get_person_by_netid(self, netid):
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uw-it-aca/uw-restclients-pws | uw_pws/__init__.py | PWS.get_person_by_employee_id | def get_person_by_employee_id(self, employee_id):
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uw-it-aca/uw-restclients-pws | uw_pws/__init__.py | PWS.get_person_by_student_number | def get_person_by_student_number(self, student_number):
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uw-it-aca/uw-restclients-pws | uw_pws/__init__.py | PWS.get_person_by_prox_rfid | def get_person_by_prox_rfid(self, prox_rfid):
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uw-it-aca/uw-restclients-pws | uw_pws/__init__.py | PWS.get_entity_by_regid | def get_entity_by_regid(self, regid):
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adaptive-learning/proso-apps | proso_concepts/models.py | generate_identifier | def generate_identifier(sender, instance, **kwargs):
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Generate and set identifier of concept before saving object to DB
Args:
sender (class): should be Concept
instance (Concept): saving concept
"""
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sender (class): should be Concept
instance (Concept): saving concept
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concepts (list of Concept): Defaults to None meaning all concepts
lang (str): language of concepts, if None use language of concepts
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adaptive-learning/proso-apps | proso_concepts/models.py | ConceptManager.get_item_concept_mapping | def get_item_concept_mapping(self, lang):
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lang (str): language of concepts
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dict: item (int) -> set of concepts (int)
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""" Get mapping of items_ids to concepts containing these items
Args:
lang (str): language of concepts
Returns:
dict: item (int) -> set of concepts (int)
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concepts = self.filter(active=True, lang=lang)
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adaptive-learning/proso-apps | proso_concepts/models.py | ConceptManager.get_concepts_to_recalculate | def get_concepts_to_recalculate(self, users, lang, concepts=None):
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Get concept which have same changes and have to be recalculated
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users (list of users or user): users whose user stats we are interesting in
lang (str): language of used concepts
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users (list of users or user): users whose user stats we are interesting in
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adaptive-learning/proso-apps | proso_concepts/models.py | UserStatManager.recalculate_concepts | def recalculate_concepts(self, concepts, lang=None):
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Recalculated given concepts for given users
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concepts (dict): user id (int -> set of concepts to recalculate)
lang(Optional[str]): language used to get items in all concepts (cached).
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concepts (dict): user id (int -> set of concepts to recalculate)
lang(Optional[str]): language used to get items in all concepts (cached).
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adaptive-learning/proso-apps | proso_concepts/models.py | UserStatManager.get_user_stats | def get_user_stats(self, users, lang=None, concepts=None, since=None, recalculate=True):
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Finds all UserStats of given concepts and users.
Recompute UserStats if necessary
Args:
users (Optional[list of users] or [user]): list of primary keys of user or users
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"""
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users (Optional[list of users] or [user]): list of primary keys of user or users
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Kortemme-Lab/klab | klab/deprecated/rosettadb.py | DatabaseInterface.locked_execute | def locked_execute(self, sql, parameters = None, cursorClass = DictCursor, quiet = False):
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Kortemme-Lab/klab | klab/deprecated/rosettadb.py | DatabaseInterface.execute | def execute(self, sql, parameters = None, cursorClass = DictCursor, quiet = False, locked = False, do_commit = True):
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Kortemme-Lab/klab | klab/deprecated/rosettadb.py | RosettaDB.execQuery | def execQuery(self, sql, parameters = None, cursorClass = MySQLdb.cursors.Cursor, InnoDB = False):
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Kortemme-Lab/klab | klab/deprecated/rosettadb.py | RosettaDB._getFieldsInDB | def _getFieldsInDB(self, tablename):
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ABI-Software/MeshParser | src/meshparser/stlparser/parser.py | _is_ascii_stl | def _is_ascii_stl(first_bytes):
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assamite/creamas | creamas/util.py | split_addrs | def split_addrs(addrs):
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assamite/creamas | creamas/util.py | addrs2managers | def addrs2managers(addrs):
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.. seealso::
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.. seealso::
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ronhanson/python-tbx | tbx/template.py | create_jinja_env | def create_jinja_env(template_path):
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uogbuji/versa | tools/py/writer/md.py | write | def write(models, out=None, base=None, propertybase=None, shorteners=None, logger=logging):
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aacanakin/glim | glim/app.py | Glim.register_routes | def register_routes(self):
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TUNE-Archive/freight_forwarder | freight_forwarder/cli/info.py | InfoCommand._info | def _info(self, args, **extra_args):
"""Print freight forwarder info to the user.
"""
if not isinstance(args, argparse.Namespace):
raise logger.error(Exception("args should of an instance of argparse.Namespace"))
logger.info("Freight Forwarder: {0}".format(VERSION))
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"""Print freight forwarder info to the user.
"""
if not isinstance(args, argparse.Namespace):
raise logger.error(Exception("args should of an instance of argparse.Namespace"))
logger.info("Freight Forwarder: {0}".format(VERSION))
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20c/pluginmgr | pluginmgr/__init__.py | PluginManager.register | def register(self, typ):
""" register a plugin """
# should be able to combine class/instance namespace, and inherit from either
# would need to store meta or rely on copy ctor
def _func(cls):
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""" register a plugin """
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get class by name
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projectshift/shift-boiler | boiler/errors.py | register_error_handler | def register_error_handler(app, handler=None):
"""
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:param app: flask.Flask - flask application instance
:param handler: function - the handler
:return: None
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"""
Register error handler
Registers an exception handler on the app instance for every type of
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:param app: flask.Flask - flask application instance
:param handler: function - the handler
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projectshift/shift-boiler | boiler/errors.py | default_error_handler | def default_error_handler(exception):
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"""
Default error handler
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ethan92429/onshapepy | onshapepy/core/onshape.py | Onshape._make_nonce | def _make_nonce(self):
'''
Generate a unique ID for the request, 25 chars in length
Returns:
- str: Cryptographic nonce
'''
chars = string.digits + string.ascii_letters
nonce = ''.join(random.choice(chars) for i in range(25))
if self._logging:
... | python | def _make_nonce(self):
'''
Generate a unique ID for the request, 25 chars in length
Returns:
- str: Cryptographic nonce
'''
chars = string.digits + string.ascii_letters
nonce = ''.join(random.choice(chars) for i in range(25))
if self._logging:
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ethan92429/onshapepy | onshapepy/core/onshape.py | Onshape._make_auth | def _make_auth(self, method, date, nonce, path, query={}, ctype='application/json'):
'''
Create the request signature to authenticate
Args:
- method (str): HTTP method
- date (str): HTTP date header string
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'''
Create the request signature to authenticate
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- date (str): HTTP date header string
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ethan92429/onshapepy | onshapepy/core/onshape.py | Onshape._make_headers | def _make_headers(self, method, path, query={}, headers={}):
'''
Creates a headers object to sign the request
Args:
- method (str): HTTP method
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'''
Creates a headers object to sign the request
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ethan92429/onshapepy | onshapepy/core/onshape.py | Onshape.request | def request(self, method, path, query={}, headers={}, body={}, base_url=None):
'''
Issues a request to Onshape
Args:
- method (str): HTTP method
- path (str): Path e.g. /api/documents/:id
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'''
Issues a request to Onshape
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Ceasar/twosheds | twosheds/program.py | Program.gen_sentences | def gen_sentences(self, tokens, aliases=None):
"""
Generate a sequence of sentences from stream of tokens.
"""
if aliases is None:
aliases = {}
for sentence in self._gen_sentences(tokens):
try:
alias = aliases[str(sentence[0])]
... | python | def gen_sentences(self, tokens, aliases=None):
"""
Generate a sequence of sentences from stream of tokens.
"""
if aliases is None:
aliases = {}
for sentence in self._gen_sentences(tokens):
try:
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ZEDGR/pychal | challonge/api.py | set_timezone | def set_timezone(new_tz=None):
"""Set the timezone for datetime fields.
By default is your machine's time.
If it's called without parameter sets the
local time again.
:keyword param new_tz: timezone string
ex. 'Europe/Athens',
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'America/Los_Angeles',
'UTC'
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"""Set the timezone for datetime fields.
By default is your machine's time.
If it's called without parameter sets the
local time again.
:keyword param new_tz: timezone string
ex. 'Europe/Athens',
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ZEDGR/pychal | challonge/api.py | fetch_and_parse | def fetch_and_parse(method, uri, params_prefix=None, **params):
"""Fetch the given uri and return python dictionary with parsed data-types."""
response = fetch(method, uri, params_prefix, **params)
return _parse(json.loads(response.text)) | python | def fetch_and_parse(method, uri, params_prefix=None, **params):
"""Fetch the given uri and return python dictionary with parsed data-types."""
response = fetch(method, uri, params_prefix, **params)
return _parse(json.loads(response.text)) | [
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ZEDGR/pychal | challonge/api.py | _parse | def _parse(data):
"""Recursively convert a json into python data types"""
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return [_parse(subdata) for subdata in data]
# extract the nested dict. ex. {"tournament": {"url": "7k1safq" ...}}
d = {ik: v for k in data.keys() ... | python | def _parse(data):
"""Recursively convert a json into python data types"""
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uw-it-aca/uw-restclients-sws | uw_sws/department.py | get_departments_by_college | def get_departments_by_college(college):
"""
Returns a list of restclients.Department models, for the passed
College model.
"""
url = "{}?{}".format(
dept_search_url_prefix,
urlencode({"college_abbreviation": college.label}))
return _json_to_departments(get_resource(url), college... | python | def get_departments_by_college(college):
"""
Returns a list of restclients.Department models, for the passed
College model.
"""
url = "{}?{}".format(
dept_search_url_prefix,
urlencode({"college_abbreviation": college.label}))
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berkeley-cocosci/Wallace | wallace/db.py | scoped_session_decorator | def scoped_session_decorator(func):
"""Manage contexts and add debugging to psiTurk sessions."""
@wraps(func)
def wrapper(*args, **kwargs):
from wallace.db import session as wallace_session
with sessions_scope(wallace_session) as session:
from psiturk.db import db_session as psi_... | python | def scoped_session_decorator(func):
"""Manage contexts and add debugging to psiTurk sessions."""
@wraps(func)
def wrapper(*args, **kwargs):
from wallace.db import session as wallace_session
with sessions_scope(wallace_session) as session:
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Ceasar/twosheds | twosheds/terminal.py | Terminal.readline | def readline(self, continuation=False):
"""Read a line from the terminal.
A backslash followed by a <newline> is interpreted as a line
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$ uname \
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x86_64
... | python | def readline(self, continuation=False):
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Ceasar/twosheds | twosheds/terminal.py | Terminal.readlines | def readlines(self):
"""Read a command from the terminal.
Returns a list of tokens containing the user's input.
"""
continuation = False
while True:
yield self.readline(continuation)
continuation = True | python | def readlines(self):
"""Read a command from the terminal.
Returns a list of tokens containing the user's input.
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continuation = False
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yield self.readline(continuation)
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Kortemme-Lab/klab | klab/bio/pdb.py | sequence | def sequence(pdb_filepath):
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:param pdb_filepath: A path to a PDB file.
:return: A string where odd line is a chain letter and each following even line is that chain's ATOM sequence.
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from ... | python | def sequence(pdb_filepath):
'''A convenience method for printing PDB sequences in command-line execution.
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.fix_pdb | def fix_pdb(self):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.replace_headers | def replace_headers(source_pdb_content, target_pdb_content):
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target_pdb_content had.
Only the content up to the first structural line are taken from source_pdb_content and only the c... | python | def replace_headers(source_pdb_content, target_pdb_content):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.from_lines | def from_lines(pdb_file_lines, strict = True, parse_ligands = False):
'''A function to replace the old constructor call where a list of the file's lines was passed in.'''
return PDB("\n".join(pdb_file_lines), strict = strict, parse_ligands = parse_ligands) | python | def from_lines(pdb_file_lines, strict = True, parse_ligands = False):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB._split_lines | def _split_lines(self):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB._update_structure_lines | def _update_structure_lines(self):
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structure_lines = []
atom_chain_order = []
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... | python | def _update_structure_lines(self):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.clone | def clone(self, parse_ligands = False):
'''A function to replace the old constructor call where a PDB object was passed in and 'cloned'.'''
return PDB("\n".join(self.lines), pdb_id = self.pdb_id, strict = self.strict, parse_ligands = parse_ligands) | python | def clone(self, parse_ligands = False):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.get_pdb_id | def get_pdb_id(self):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.get_annotated_chain_sequence_string | def get_annotated_chain_sequence_string(self, chain_id, use_seqres_sequences_if_possible, raise_Exception_if_not_found = True):
'''A helper function to return the Sequence for a chain. If use_seqres_sequences_if_possible then we return the SEQRES
Sequence if it exists. We return a tuple of values, th... | python | def get_annotated_chain_sequence_string(self, chain_id, use_seqres_sequences_if_possible, raise_Exception_if_not_found = True):
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.get_chain_sequence_string | def get_chain_sequence_string(self, chain_id, use_seqres_sequences_if_possible, raise_Exception_if_not_found = True):
'''Similar to get_annotated_chain_sequence_string except that we only return the Sequence and do not state which sequence it was.'''
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Kortemme-Lab/klab | klab/bio/pdb.py | PDB.strip_HETATMs | def strip_HETATMs(self, only_strip_these_chains = []):
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] | 6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b | https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/pdb.py#L800-L806 | train |
Kortemme-Lab/klab | klab/bio/pdb.py | PDB._get_pdb_format_version | def _get_pdb_format_version(self):
'''Remark 4 indicates the version of the PDB File Format used to generate the file.'''
if not self.format_version:
version = None
version_lines = None
try:
version_lines = [line for line in self.parsed_lines['REMARK']... | python | def _get_pdb_format_version(self):
'''Remark 4 indicates the version of the PDB File Format used to generate the file.'''
if not self.format_version:
version = None
version_lines = None
try:
version_lines = [line for line in self.parsed_lines['REMARK']... | [
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] | 6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b | https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/bio/pdb.py#L926-L944 | train |
Kortemme-Lab/klab | klab/bio/pdb.py | PDB.get_atom_sequence_to_rosetta_json_map | def get_atom_sequence_to_rosetta_json_map(self):
'''Returns the mapping from PDB ATOM residue IDs to Rosetta residue IDs in JSON format.'''
import json
d = {}
atom_sequence_to_rosetta_mapping = self.get_atom_sequence_to_rosetta_map()
for c, sm in atom_sequence_to_rosetta_mapping.... | python | def get_atom_sequence_to_rosetta_json_map(self):
'''Returns the mapping from PDB ATOM residue IDs to Rosetta residue IDs in JSON format.'''
import json
d = {}
atom_sequence_to_rosetta_mapping = self.get_atom_sequence_to_rosetta_map()
for c, sm in atom_sequence_to_rosetta_mapping.... | [
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