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lsst-sqre/sqre-codekit | codekit/cli/github_tag_teams.py | check_tags | def check_tags(repos, tags, ignore_existing=False, fail_fast=False):
""" check if tags already exist in repos"""
debug("looking for {n} tag(s):".format(n=len(tags)))
[debug(" {t}".format(t=t)) for t in tags]
debug("in {n} repo(s):".format(n=len(repos)))
[debug(" {r}".format(r=r.full_name)) for r ... | python | def check_tags(repos, tags, ignore_existing=False, fail_fast=False):
""" check if tags already exist in repos"""
debug("looking for {n} tag(s):".format(n=len(tags)))
[debug(" {t}".format(t=t)) for t in tags]
debug("in {n} repo(s):".format(n=len(repos)))
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lsst-sqre/sqre-codekit | codekit/cli/github_tag_teams.py | delete_refs | def delete_refs(repo, refs, dry_run=False):
"""Note that only the ref to a tag can be explicitly removed. The tag
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assert isinstance(repo, github.Repository.Repository), type(repo)
debug("removing {n} refs from {repo}".format(
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assert isinstance(repo, github.Repository.Repository), type(repo)
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RedHatQE/Sentaku | examples/todo_example/ux.py | TodoUX.get_by | def get_by(self, name):
"""get a todo list ux by name
:rtype: TodoListUX
"""
item = self.app.get_by(name)
return TodoListUX(ux=self, controlled_list=item) | python | def get_by(self, name):
"""get a todo list ux by name
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RedHatQE/Sentaku | examples/todo_example/ux.py | TodoUX.create_item | def create_item(self, name):
"""create a new named todo list
:rtype: TodoListUX
"""
item = self.app.create_item(name)
return TodoListUX(ux=self, controlled_list=item) | python | def create_item(self, name):
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RedHatQE/Sentaku | examples/todo_example/ux.py | TodoListUX.get_by | def get_by(self, name):
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Frzk/Ellis | ellis_actions/nftables.py | NFTables.chose_blacklist | def chose_blacklist(self, ip):
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Given an IP address, figure out the set we have to use.
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If the address is an IPv6, we have to use *ellis_blacklist6*.
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"""
Given an IP address, figure out the set we have to use.
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If the address is an IPv6, we have to use *ellis_blacklist6*.
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sirfoga/pyhal | hal/maths/problems.py | EightQueen.under_attack | def under_attack(col, queens):
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:param col: Column number
:param queens: list of queens
:return: True iff queen is under attack
"""
left = right = col
for _, column in reversed(queens):
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"""Checks if queen is under attack
:param col: Column number
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rspivak/crammit | src/crammit/__init__.py | AssetManager._get_bundles_by_type | def _get_bundles_by_type(self, type):
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type: 'javascript' or 'css'
"""
bundles = {}
bundle_definitions = self.config.get(type)
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lowandrew/OLCTools | spadespipeline/mMLST.py | getmlsthelper | def getmlsthelper(referencefilepath, start, organism, update):
"""Prepares to run the getmlst.py script provided in SRST2"""
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# Initialise a set to for the organism(s) for which new alleles and profiles are desired
organismset = set()
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"""Prepares to run the getmlst.py script provided in SRST2"""
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lowandrew/OLCTools | spadespipeline/mMLST.py | MLST.blastnprep | def blastnprep(self):
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for sample in self.metadata:
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#
# sample[self.analysistype].alleleresults = GenObject()
sa... | python | def blastnprep(self):
"""Setup blastn analyses"""
# Populate threads for each gene, genome combination
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lowandrew/OLCTools | spadespipeline/mMLST.py | PipelineInit.strainer | def strainer(self):
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sirfoga/pyhal | hal/times/utils.py | Timing.get_seconds | def get_seconds(self):
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total_seconds = parsed.second
total_seconds += parsed.minute * 60.0
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"""Gets seconds from raw time
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"""
parsed = self.parse_hh_mm_ss() # get times
total_seconds = parsed.second
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sirfoga/pyhal | hal/internet/email/utils.py | get_email_content | def get_email_content(file_path):
"""Email content in file
:param file_path: Path to file with email text
:return: Email text (html formatted)
"""
with open(file_path, "r") as in_file:
text = str(in_file.read())
return text.replace("\n\n", "<br>") | python | def get_email_content(file_path):
"""Email content in file
:param file_path: Path to file with email text
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"""
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portfors-lab/sparkle | sparkle/run/abstract_acquisition.py | AbstractAcquisitionRunner.set | def set(self, **kwargs):
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:type acqtime: float
:param aifs: sample rate of the recording (input) operation (Hz)
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:type acqtime: float
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portfors-lab/sparkle | sparkle/run/abstract_acquisition.py | AbstractAcquisitionRunner.interval_wait | def interval_wait(self):
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# calculate time since last interation and wait to acheive desired interval
now = time.time()
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portfors-lab/sparkle | sparkle/run/abstract_acquisition.py | AbstractAcquisitionRunner.putnotify | def putnotify(self, name, *args):
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self.queues[name][0].put(*args)
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lowandrew/OLCTools | metagenomefilter/filtermetagenome.py | FilterGenome.loadassignment | def loadassignment(self):
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portfors-lab/sparkle | sparkle/tools/log.py | init_logging | def init_logging():
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klahnakoski/mo-logs | mo_logs/exceptions.py | extract_stack | def extract_stack(start=0):
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grahame/dividebatur | dividebatur/counter.py | SenateCounter.determine_elected_candidates_in_order | def determine_elected_candidates_in_order(self, candidate_votes):
"""
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grahame/dividebatur | dividebatur/counter.py | SenateCounter.get_initial_totals | def get_initial_totals(self):
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grahame/dividebatur | dividebatur/counter.py | SenateCounter.bundle_to_next_candidate | def bundle_to_next_candidate(self, bundle):
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grahame/dividebatur | dividebatur/counter.py | SenateCounter.elect | def elect(self, candidate_aggregates, candidate_id):
"""
Elect a candidate, updating internal state to track this.
Calculate the paper count to be transferred on to other candidates,
and if required schedule a distribution fo papers.
"""
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Elect a candidate, updating internal state to track this.
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grahame/dividebatur | dividebatur/counter.py | SenateCounter.find_tie_breaker | def find_tie_breaker(self, candidate_ids):
"""
finds a round in the count history in which the candidate_ids each had different vote counts
if no such round exists, returns None
"""
for candidate_aggregates in reversed(self.round_candidate_aggregates):
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"""
finds a round in the count history in which the candidate_ids each had different vote counts
if no such round exists, returns None
"""
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ArabellaTech/django-basic-cms | basic_cms/permissions.py | PagePermission.check | def check(self, action, page=None, lang=None, method=None):
"""Return ``True`` if the current user has permission on the page."""
if self.user.is_superuser:
return True
if action == 'change':
return self.has_change_permission(page, lang, method)
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"""Return ``True`` if the current user has permission on the page."""
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# the user has always the right to look at a page content
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return True
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hughsie/python-appstream | appstream/utils.py | _join_lines | def _join_lines(txt):
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lines = txt.split('\n')
for line in lines:
stripped = line.strip()
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val += stripped + ' '
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""" Remove whitespace from XML input """
txt = txt or '' # Handle NoneType input values
val = ''
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""" A quick'n'dirty description parser """
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""" Validate the description for validity """
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sirfoga/pyhal | hal/internet/selenium/forms.py | SeleniumFormFiller.fill_form_field | def fill_form_field(self, field_name, field_value):
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JukeboxPipeline/jukeboxmaya | src/jukeboxmaya/commands.py | open_scene | def open_scene(f, kwargs=None):
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:type f: :class:`jukeboxcore.filesys.JB_File`
:param kwargs: keyword arguments for the command maya.cmds file.
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:type f: :class:`jukeboxcore.filesys.JB_File`
:returns: None
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:raises: None
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sholsapp/py509 | py509/client.py | get_host_certificate | def get_host_certificate(host, port=443):
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sirfoga/pyhal | hal/data/dicts.py | get_inner_keys | def get_inner_keys(dictionary):
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yamcs/yamcs-python | yamcs-cli/yamcs/cli/dbshell.py | DbShell.do_use | def do_use(self, args):
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portfors-lab/sparkle | sparkle/gui/dialogs/saving_dlg.py | SavingDialog.update_label | def update_label(self):
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wylee/runcommands | runcommands/util/path.py | abs_path | def abs_path(path, format_kwargs={}, relative_to=None, keep_slash=False):
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Naresh1318/crystal | crystal/app.py | index | def index():
"""
Renders the dashboard when the server is initially run.
Usage description:
The rendered HTML allows the user to select a project and the desired run.
:return: Template to render, Object that is taken care by flask.
"""
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"""
Renders the dashboard when the server is initially run.
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Naresh1318/crystal | crystal/app.py | update | def update():
"""
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Usage description:
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"""
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"""
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Naresh1318/crystal | crystal/app.py | get_projects | def get_projects():
"""
Send a dictionary of projects that are available on the database.
Usage description:
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:return: JSON, {<int_keys>: <project_name>}
"""
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"""
Send a dictionary of projects that are available on the database.
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Naresh1318/crystal | crystal/app.py | get_runs | def get_runs():
"""
Send a dictionary of runs associated with the selected project.
Usage description:
This function is usually called to get and display the list of runs associated with a selected project available
in the database.
:return: JSON, {<int_keys>: <run_name>}
"""
assert re... | python | def get_runs():
"""
Send a dictionary of runs associated with the selected project.
Usage description:
This function is usually called to get and display the list of runs associated with a selected project available
in the database.
:return: JSON, {<int_keys>: <run_name>}
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Send a dictionary of variables associated with the selected run.
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:return: JSON, {<int_keys>: <run_n... | python | def get_variables():
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Send a dictionary of variables associated with the selected run.
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wylee/runcommands | commands.py | install_completion | def install_completion(
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overwrite: 'Overwrite if exists' = False):
"""Install command line completion script.
Currently, ba... | python | def install_completion(
shell: arg(choices=('bash', 'fish'), help='Shell to install completion for'),
to: arg(help='~/.bashrc.d/runcommands.rc or ~/.config/fish/runcommands.fish') = None,
overwrite: 'Overwrite if exists' = False):
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NoviceLive/intellicoder | intellicoder/synthesizers.py | Synthesizer.synthesize | def synthesize(self, modules, use_string, x64, native):
"""Transform sources."""
# code_opts = CodeOpts(
# str.lower, None if use_string else hash_func,
# 'reloc_delta', '->',
# True)
# gen_opts = GenOpts('defs', transformed)
print(hash_func)
g... | python | def synthesize(self, modules, use_string, x64, native):
"""Transform sources."""
# code_opts = CodeOpts(
# str.lower, None if use_string else hash_func,
# 'reloc_delta', '->',
# True)
# gen_opts = GenOpts('defs', transformed)
print(hash_func)
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NoviceLive/intellicoder | intellicoder/synthesizers.py | Synthesizer.make_source | def make_source(self, groups, code_opts, gen_opts):
"""Build the final source code for all modules."""
modules = self.make_modules(groups, code_opts)
var_decls = modules.var_decls
relocs = AttrsGetter(modules.relocs)
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if code_opts.... | python | def make_source(self, groups, code_opts, gen_opts):
"""Build the final source code for all modules."""
modules = self.make_modules(groups, code_opts)
var_decls = modules.var_decls
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NoviceLive/intellicoder | intellicoder/synthesizers.py | Synthesizer.make_modules | def make_modules(self, groups, code_opts):
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"""Build shellcoding files for the module."""
modules = []
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_source | def c_source(self):
"""Return strings."""
relocs = Relocs(
''.join(self.c_self_relocs()), *self.c_module_relocs()
)
return Source(
''.join(self.c_typedefs()),
'' if self.opts.no_structs else self.c_struct(),
''.join(self.c_hashes()),
... | python | def c_source(self):
"""Return strings."""
relocs = Relocs(
''.join(self.c_self_relocs()), *self.c_module_relocs()
)
return Source(
''.join(self.c_typedefs()),
'' if self.opts.no_structs else self.c_struct(),
''.join(self.c_hashes()),
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_typedefs | def c_typedefs(self):
"""Get the typedefs of the module."""
defs = []
attrs = self.opts.attrs + '\n' if self.opts.attrs else ''
for name, args in self.funcs:
logging.debug('name: %s args: %s', name, args)
defs.append(
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"""Get the typedefs of the module."""
defs = []
attrs = self.opts.attrs + '\n' if self.opts.attrs else ''
for name, args in self.funcs:
logging.debug('name: %s args: %s', name, args)
defs.append(
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_struct | def c_struct(self):
"""Get the struct of the module."""
member = '\n'.join(self.c_member_funcs(True))
if self.opts.windll:
return 'struct {{\n{}{} }} {};\n'.format(
self._c_dll_base(), member, self.name
)
return 'typedef\nstruct {2} {{\n{0}\n{1}}}\... | python | def c_struct(self):
"""Get the struct of the module."""
member = '\n'.join(self.c_member_funcs(True))
if self.opts.windll:
return 'struct {{\n{}{} }} {};\n'.format(
self._c_dll_base(), member, self.name
)
return 'typedef\nstruct {2} {{\n{0}\n{1}}}\... | [
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_hashes | def c_hashes(self):
"""Get the hashes of the module including functions and DLLs.
"""
if callable(self.opts.hash_func):
hashes = [
'# define {}{} {}\n'.format(
self.opts.prefix, name, self.opts.hash_func(name)
) for name, dummy_args... | python | def c_hashes(self):
"""Get the hashes of the module including functions and DLLs.
"""
if callable(self.opts.hash_func):
hashes = [
'# define {}{} {}\n'.format(
self.opts.prefix, name, self.opts.hash_func(name)
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_self_relocs | def c_self_relocs(self):
"""Build relocation for strings."""
relocs = []
if not callable(self.opts.hash_func):
relocs = [
reloc_ptr(
self.opts.prefix + name, self.opts.reloc_delta,
'char *'
)
for ... | python | def c_self_relocs(self):
"""Build relocation for strings."""
relocs = []
if not callable(self.opts.hash_func):
relocs = [
reloc_ptr(
self.opts.prefix + name, self.opts.reloc_delta,
'char *'
)
for ... | [
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_var_decls | def c_var_decls(self):
"""Get the needed variable definitions."""
if self.opts.no_structs:
mod_decl = 'HMODULE {} = NULL;\n'.format(self.name)
return [mod_decl] + [
'{} *{} = NULL;\n'.format(
self._c_type_name(name), name
)
... | python | def c_var_decls(self):
"""Get the needed variable definitions."""
if self.opts.no_structs:
mod_decl = 'HMODULE {} = NULL;\n'.format(self.name)
return [mod_decl] + [
'{} *{} = NULL;\n'.format(
self._c_type_name(name), name
)
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_module_relocs | def c_module_relocs(self):
"""Build relocation for the module variable."""
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return '', ''
x86 = reloc_var(
self.name, self._c_struct_names()[1],
self.opts.reloc_delta,
self._c_uses_pointer()
)
... | python | def c_module_relocs(self):
"""Build relocation for the module variable."""
if self.opts.no_structs or self.opts.windll:
return '', ''
x86 = reloc_var(
self.name, self._c_struct_names()[1],
self.opts.reloc_delta,
self._c_uses_pointer()
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_loadlib | def c_loadlib(self):
"""Get the loadlib of the module."""
name = self._c_base_var()
kernel32 = 'windll->kernel32.'
if self.name == 'kernel32':
loadlib = '{} = get_kernel32_base();\n'.format(
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else kernel32 + se... | python | def c_loadlib(self):
"""Get the loadlib of the module."""
name = self._c_base_var()
kernel32 = 'windll->kernel32.'
if self.name == 'kernel32':
loadlib = '{} = get_kernel32_base();\n'.format(
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_getprocs | def c_getprocs(self):
"""Get the getprocs of the module."""
getprocs = []
for name, dummy_args in self.funcs:
if name == 'GetProcAddress':
if callable(self.opts.hash_func):
continue
getter = 'get_proc_by_string'
elif sel... | python | def c_getprocs(self):
"""Get the getprocs of the module."""
getprocs = []
for name, dummy_args in self.funcs:
if name == 'GetProcAddress':
if callable(self.opts.hash_func):
continue
getter = 'get_proc_by_string'
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NoviceLive/intellicoder | intellicoder/synthesizers.py | ModuleSource.c_member_funcs | def c_member_funcs(self, for_struct=False):
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computational-metabolomics/msp2db | msp2db/utils.py | get_precursor_mz | def get_precursor_mz(exact_mass, precursor_type):
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portfors-lab/sparkle | sparkle/stim/abstract_component.py | AbstractStimulusComponent.amplitude | def amplitude(self, caldb, calv, atten=0):
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:type caldb: float
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portfors-lab/sparkle | sparkle/stim/abstract_component.py | AbstractStimulusComponent.verify | def verify(self, **kwargs):
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portfors-lab/sparkle | sparkle/stim/abstract_component.py | AbstractStimulusComponent.stateDict | def stateDict(self):
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portfors-lab/sparkle | sparkle/stim/abstract_component.py | AbstractStimulusComponent.loadState | def loadState(self, state):
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:type state: dict
"""
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self._intensity = state['intensity']
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mediawiki-utilities/python-mwoauth | mwoauth/handshaker.py | Handshaker.initiate | def initiate(self, callback=None):
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callback : `str`
Callback URL. Defaults to 'oob'.
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A `tuple` of two values:
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AllTheWayDown/turgles | turgles/gl/uniform.py | _load_variable | def _load_variable(func, program_id, index):
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type = pointer(GLenum(0))
uname = create_string_buffer(n)
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portfors-lab/sparkle | sparkle/gui/stim/explore_component_editor.py | ExploreComponentEditor.addWidget | def addWidget(self, widget, name):
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self.exploreStimTypeCmbbx.addItem(name)
self.componentStack.addWidget(widget)
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portfors-lab/sparkle | sparkle/gui/stim/explore_component_editor.py | ExploreComponentEditor.saveTemplate | def saveTemplate(self):
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wylee/runcommands | runcommands/command.py | Command.expand_short_options | def expand_short_options(self, argv):
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wylee/runcommands | runcommands/command.py | Command.option_map | def option_map(self):
"""Map command-line options to args."""
option_map = OrderedDict()
for arg in self.args.values():
for option in arg.options:
option_map[option] = arg
return option_map | python | def option_map(self):
"""Map command-line options to args."""
option_map = OrderedDict()
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option_map[option] = arg
return option_map | [
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lowandrew/OLCTools | sipprCommon/objectprep.py | Objectprep.objectprep | def objectprep(self):
"""
Creates fastq files from an in-progress Illumina MiSeq run or create an object and moves files appropriately
"""
# Create .fastq files if necessary. Otherwise create the metadata object
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... | python | def objectprep(self):
"""
Creates fastq files from an in-progress Illumina MiSeq run or create an object and moves files appropriately
"""
# Create .fastq files if necessary. Otherwise create the metadata object
if self.bcltofastq:
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lowandrew/OLCTools | spadespipeline/fileprep.py | Fileprep.fileprep | def fileprep(self):
"""Decompress and concatenate .fastq files"""
# Create and start threads
for i in range(self.cpus):
# Send the threads to the appropriate destination function
threads = Thread(target=self.prep, args=())
# Set the daemon to true - something ... | python | def fileprep(self):
"""Decompress and concatenate .fastq files"""
# Create and start threads
for i in range(self.cpus):
# Send the threads to the appropriate destination function
threads = Thread(target=self.prep, args=())
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NoviceLive/intellicoder | intellicoder/converters.py | chunked_join | def chunked_join(iterable, int1, int2, str1, str2, func):
"""Chunk and join."""
chunks = list(chunked(iterable, int1))
logging.debug(chunks)
groups = [list(chunked(chunk, int2)) for chunk in chunks]
logging.debug(groups)
return str1.join([
str2.join([func(''.join(chunk)) for chunk in chu... | python | def chunked_join(iterable, int1, int2, str1, str2, func):
"""Chunk and join."""
chunks = list(chunked(iterable, int1))
logging.debug(chunks)
groups = [list(chunked(chunk, int2)) for chunk in chunks]
logging.debug(groups)
return str1.join([
str2.join([func(''.join(chunk)) for chunk in chu... | [
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NoviceLive/intellicoder | intellicoder/converters.py | bytes_to_c_string | def bytes_to_c_string(data):
"""
Convert the hexadecimal string in to C-style string.
"""
rows = chunked_join(data, 20, 2, '"\n "', '', r'\x' + X)
logging.debug(_('Returning rows: %s'), rows)
return '"{}";'.format(rows) | python | def bytes_to_c_string(data):
"""
Convert the hexadecimal string in to C-style string.
"""
rows = chunked_join(data, 20, 2, '"\n "', '', r'\x' + X)
logging.debug(_('Returning rows: %s'), rows)
return '"{}";'.format(rows) | [
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NoviceLive/intellicoder | intellicoder/converters.py | bytes_to_c_array | def bytes_to_c_array(data):
"""
Make a C array using the given string.
"""
chars = [
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return ', '.join(chars) + ', 0' | python | def bytes_to_c_array(data):
"""
Make a C array using the given string.
"""
chars = [
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return ', '.join(chars) + ', 0' | [
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NoviceLive/intellicoder | intellicoder/converters.py | Converter.uni_from | def uni_from(cls, source, *args, **kwargs):
"""Unified from."""
logging.debug(_('source: %s, args: %s, kwargs: %s'),
source, args, kwargs)
return getattr(cls, cls.cons_dict[source])(*args, **kwargs) | python | def uni_from(cls, source, *args, **kwargs):
"""Unified from."""
logging.debug(_('source: %s, args: %s, kwargs: %s'),
source, args, kwargs)
return getattr(cls, cls.cons_dict[source])(*args, **kwargs) | [
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NoviceLive/intellicoder | intellicoder/converters.py | Converter.uni_to | def uni_to(self, target, *args, **kwargs):
"""Unified to."""
logging.debug(_('target: %s, args: %s, kwargs: %s'),
target, args, kwargs)
return getattr(self, self.func_dict[target])(*args, **kwargs) | python | def uni_to(self, target, *args, **kwargs):
"""Unified to."""
logging.debug(_('target: %s, args: %s, kwargs: %s'),
target, args, kwargs)
return getattr(self, self.func_dict[target])(*args, **kwargs) | [
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