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bslatkin/dpxdt
dpxdt/server/work_queue.py
heartbeat
def heartbeat(queue_name, task_id, owner, message, index): """Sets the heartbeat status of the task and extends its lease. The task's lease is extended by the same amount as its last lease to ensure that any operations following the heartbeat will still hold the lock for the original lock period. ...
python
def heartbeat(queue_name, task_id, owner, message, index): """Sets the heartbeat status of the task and extends its lease. The task's lease is extended by the same amount as its last lease to ensure that any operations following the heartbeat will still hold the lock for the original lock period. ...
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Sets the heartbeat status of the task and extends its lease. The task's lease is extended by the same amount as its last lease to ensure that any operations following the heartbeat will still hold the lock for the original lock period. Args: queue_name: Name of the queue the work item is on. ...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue.py#L259-L303
train
bslatkin/dpxdt
dpxdt/server/work_queue.py
finish
def finish(queue_name, task_id, owner, error=False): """Marks a work item on a queue as finished. Args: queue_name: Name of the queue the work item is on. task_id: ID of the task that is finished. owner: Who or what has the current lease on the task. error: Defaults to false. Tr...
python
def finish(queue_name, task_id, owner, error=False): """Marks a work item on a queue as finished. Args: queue_name: Name of the queue the work item is on. task_id: ID of the task that is finished. owner: Who or what has the current lease on the task. error: Defaults to false. Tr...
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Marks a work item on a queue as finished. Args: queue_name: Name of the queue the work item is on. task_id: ID of the task that is finished. owner: Who or what has the current lease on the task. error: Defaults to false. True if this task's final state is an error. Returns: ...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue.py#L306-L342
train
bslatkin/dpxdt
dpxdt/server/work_queue.py
cancel
def cancel(**kwargs): """Cancels work items based on their criteria. Args: **kwargs: Same parameters as the query() method. Returns: The number of tasks that were canceled. """ task_list = _query(**kwargs) for task in task_list: task.status = WorkQueue.CANCELED ...
python
def cancel(**kwargs): """Cancels work items based on their criteria. Args: **kwargs: Same parameters as the query() method. Returns: The number of tasks that were canceled. """ task_list = _query(**kwargs) for task in task_list: task.status = WorkQueue.CANCELED ...
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Cancels work items based on their criteria. Args: **kwargs: Same parameters as the query() method. Returns: The number of tasks that were canceled.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue.py#L410-L424
train
bslatkin/dpxdt
dpxdt/server/work_queue_handlers.py
handle_add
def handle_add(queue_name): """Adds a task to a queue.""" source = request.form.get('source', request.remote_addr, type=str) try: task_id = work_queue.add( queue_name, payload=request.form.get('payload', type=str), content_type=request.form.get('content_type', typ...
python
def handle_add(queue_name): """Adds a task to a queue.""" source = request.form.get('source', request.remote_addr, type=str) try: task_id = work_queue.add( queue_name, payload=request.form.get('payload', type=str), content_type=request.form.get('content_type', typ...
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Adds a task to a queue.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue_handlers.py#L37-L53
train
bslatkin/dpxdt
dpxdt/server/work_queue_handlers.py
handle_lease
def handle_lease(queue_name): """Leases a task from a queue.""" owner = request.form.get('owner', request.remote_addr, type=str) try: task_list = work_queue.lease( queue_name, owner, request.form.get('count', 1, type=int), request.form.get('timeout', 6...
python
def handle_lease(queue_name): """Leases a task from a queue.""" owner = request.form.get('owner', request.remote_addr, type=str) try: task_list = work_queue.lease( queue_name, owner, request.form.get('count', 1, type=int), request.form.get('timeout', 6...
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Leases a task from a queue.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue_handlers.py#L59-L78
train
bslatkin/dpxdt
dpxdt/server/work_queue_handlers.py
handle_heartbeat
def handle_heartbeat(queue_name): """Updates the heartbeat message for a task.""" task_id = request.form.get('task_id', type=str) message = request.form.get('message', type=str) index = request.form.get('index', type=int) try: work_queue.heartbeat( queue_name, task_id...
python
def handle_heartbeat(queue_name): """Updates the heartbeat message for a task.""" task_id = request.form.get('task_id', type=str) message = request.form.get('message', type=str) index = request.form.get('index', type=int) try: work_queue.heartbeat( queue_name, task_id...
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Updates the heartbeat message for a task.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue_handlers.py#L84-L102
train
bslatkin/dpxdt
dpxdt/server/work_queue_handlers.py
handle_finish
def handle_finish(queue_name): """Marks a task on a queue as finished.""" task_id = request.form.get('task_id', type=str) owner = request.form.get('owner', request.remote_addr, type=str) error = request.form.get('error', type=str) is not None try: work_queue.finish(queue_name, task_id, owner...
python
def handle_finish(queue_name): """Marks a task on a queue as finished.""" task_id = request.form.get('task_id', type=str) owner = request.form.get('owner', request.remote_addr, type=str) error = request.form.get('error', type=str) is not None try: work_queue.finish(queue_name, task_id, owner...
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Marks a task on a queue as finished.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue_handlers.py#L108-L121
train
bslatkin/dpxdt
dpxdt/server/work_queue_handlers.py
view_all_work_queues
def view_all_work_queues(): """Page for viewing the index of all active work queues.""" count_list = list( db.session.query( work_queue.WorkQueue.queue_name, work_queue.WorkQueue.status, func.count(work_queue.WorkQueue.task_id)) .group_by(work_queue.WorkQueue....
python
def view_all_work_queues(): """Page for viewing the index of all active work queues.""" count_list = list( db.session.query( work_queue.WorkQueue.queue_name, work_queue.WorkQueue.status, func.count(work_queue.WorkQueue.task_id)) .group_by(work_queue.WorkQueue....
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Page for viewing the index of all active work queues.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue_handlers.py#L126-L169
train
bslatkin/dpxdt
dpxdt/server/work_queue_handlers.py
manage_work_queue
def manage_work_queue(queue_name): """Page for viewing the contents of a work queue.""" modify_form = forms.ModifyWorkQueueTaskForm() if modify_form.validate_on_submit(): primary_key = (modify_form.task_id.data, queue_name) task = work_queue.WorkQueue.query.get(primary_key) if task: ...
python
def manage_work_queue(queue_name): """Page for viewing the contents of a work queue.""" modify_form = forms.ModifyWorkQueueTaskForm() if modify_form.validate_on_submit(): primary_key = (modify_form.task_id.data, queue_name) task = work_queue.WorkQueue.query.get(primary_key) if task: ...
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Page for viewing the contents of a work queue.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/work_queue_handlers.py#L174-L220
train
bslatkin/dpxdt
dpxdt/server/utils.py
retryable_transaction
def retryable_transaction(attempts=3, exceptions=(OperationalError,)): """Decorator retries a function when expected exceptions are raised.""" assert len(exceptions) > 0 assert attempts > 0 def wrapper(f): @functools.wraps(f) def wrapped(*args, **kwargs): for i in xrange(att...
python
def retryable_transaction(attempts=3, exceptions=(OperationalError,)): """Decorator retries a function when expected exceptions are raised.""" assert len(exceptions) > 0 assert attempts > 0 def wrapper(f): @functools.wraps(f) def wrapped(*args, **kwargs): for i in xrange(att...
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Decorator retries a function when expected exceptions are raised.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/utils.py#L37-L58
train
bslatkin/dpxdt
dpxdt/server/utils.py
jsonify_assert
def jsonify_assert(asserted, message, status_code=400): """Asserts something is true, aborts the request if not.""" if asserted: return try: raise AssertionError(message) except AssertionError, e: stack = traceback.extract_stack() stack.pop() logging.error('Assert...
python
def jsonify_assert(asserted, message, status_code=400): """Asserts something is true, aborts the request if not.""" if asserted: return try: raise AssertionError(message) except AssertionError, e: stack = traceback.extract_stack() stack.pop() logging.error('Assert...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/utils.py#L61-L72
train
bslatkin/dpxdt
dpxdt/server/utils.py
jsonify_error
def jsonify_error(message_or_exception, status_code=400): """Returns a JSON payload that indicates the request had an error.""" if isinstance(message_or_exception, Exception): message = '%s: %s' % ( message_or_exception.__class__.__name__, message_or_exception) else: message = me...
python
def jsonify_error(message_or_exception, status_code=400): """Returns a JSON payload that indicates the request had an error.""" if isinstance(message_or_exception, Exception): message = '%s: %s' % ( message_or_exception.__class__.__name__, message_or_exception) else: message = me...
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Returns a JSON payload that indicates the request had an error.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/utils.py#L75-L87
train
bslatkin/dpxdt
dpxdt/server/utils.py
ignore_exceptions
def ignore_exceptions(f): """Decorator catches and ignores any exceptions raised by this function.""" @functools.wraps(f) def wrapped(*args, **kwargs): try: return f(*args, **kwargs) except: logging.exception("Ignoring exception in %r", f) return wrapped
python
def ignore_exceptions(f): """Decorator catches and ignores any exceptions raised by this function.""" @functools.wraps(f) def wrapped(*args, **kwargs): try: return f(*args, **kwargs) except: logging.exception("Ignoring exception in %r", f) return wrapped
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/utils.py#L90-L98
train
bslatkin/dpxdt
dpxdt/server/utils.py
timesince
def timesince(when): """Returns string representing "time since" or "time until". Examples: 3 days ago, 5 hours ago, 3 minutes from now, 5 hours from now, now. """ if not when: return '' now = datetime.datetime.utcnow() if now > when: diff = now - when suffix = ...
python
def timesince(when): """Returns string representing "time since" or "time until". Examples: 3 days ago, 5 hours ago, 3 minutes from now, 5 hours from now, now. """ if not when: return '' now = datetime.datetime.utcnow() if now > when: diff = now - when suffix = ...
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Returns string representing "time since" or "time until". Examples: 3 days ago, 5 hours ago, 3 minutes from now, 5 hours from now, now.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/utils.py#L103-L137
train
bslatkin/dpxdt
dpxdt/server/utils.py
human_uuid
def human_uuid(): """Returns a good UUID for using as a human readable string.""" return base64.b32encode( hashlib.sha1(uuid.uuid4().bytes).digest()).lower().strip('=')
python
def human_uuid(): """Returns a good UUID for using as a human readable string.""" return base64.b32encode( hashlib.sha1(uuid.uuid4().bytes).digest()).lower().strip('=')
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/utils.py#L140-L143
train
bslatkin/dpxdt
dpxdt/server/utils.py
get_deployment_timestamp
def get_deployment_timestamp(): """Returns a unique string represeting the current deployment. Used for busting caches. """ # TODO: Support other deployment situations. if os.environ.get('SERVER_SOFTWARE', '').startswith('Google App Engine'): version_id = os.environ.get('CURRENT_VERSION_ID'...
python
def get_deployment_timestamp(): """Returns a unique string represeting the current deployment. Used for busting caches. """ # TODO: Support other deployment situations. if os.environ.get('SERVER_SOFTWARE', '').startswith('Google App Engine'): version_id = os.environ.get('CURRENT_VERSION_ID'...
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Returns a unique string represeting the current deployment. Used for busting caches.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/utils.py#L163-L173
train
bslatkin/dpxdt
dpxdt/tools/url_pair_diff.py
real_main
def real_main(new_url=None, baseline_url=None, upload_build_id=None, upload_release_name=None): """Runs the ur_pair_diff.""" coordinator = workers.get_coordinator() fetch_worker.register(coordinator) coordinator.start() item = UrlPairDiff( new_url, ...
python
def real_main(new_url=None, baseline_url=None, upload_build_id=None, upload_release_name=None): """Runs the ur_pair_diff.""" coordinator = workers.get_coordinator() fetch_worker.register(coordinator) coordinator.start() item = UrlPairDiff( new_url, ...
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Runs the ur_pair_diff.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/tools/url_pair_diff.py#L132-L152
train
bslatkin/dpxdt
dpxdt/client/fetch_worker.py
fetch_internal
def fetch_internal(item, request): """Fetches the given request by using the local Flask context.""" # Break client dependence on Flask if internal fetches aren't being used. from flask import make_response from werkzeug.test import EnvironBuilder # Break circular dependencies. from dpxdt.server...
python
def fetch_internal(item, request): """Fetches the given request by using the local Flask context.""" # Break client dependence on Flask if internal fetches aren't being used. from flask import make_response from werkzeug.test import EnvironBuilder # Break circular dependencies. from dpxdt.server...
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Fetches the given request by using the local Flask context.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/fetch_worker.py#L118-L160
train
bslatkin/dpxdt
dpxdt/client/fetch_worker.py
fetch_normal
def fetch_normal(item, request): """Fetches the given request over HTTP.""" try: conn = urllib2.urlopen(request, timeout=item.timeout_seconds) except urllib2.HTTPError, e: conn = e except (urllib2.URLError, ssl.SSLError), e: # TODO: Make this status more clear item.status...
python
def fetch_normal(item, request): """Fetches the given request over HTTP.""" try: conn = urllib2.urlopen(request, timeout=item.timeout_seconds) except urllib2.HTTPError, e: conn = e except (urllib2.URLError, ssl.SSLError), e: # TODO: Make this status more clear item.status...
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Fetches the given request over HTTP.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/fetch_worker.py#L163-L189
train
bslatkin/dpxdt
dpxdt/client/fetch_worker.py
FetchItem.json
def json(self): """Returns de-JSONed data or None if it's a different content type.""" if self._data_json: return self._data_json if not self.data or self.content_type != 'application/json': return None self._data_json = json.loads(self.data) return self...
python
def json(self): """Returns de-JSONed data or None if it's a different content type.""" if self._data_json: return self._data_json if not self.data or self.content_type != 'application/json': return None self._data_json = json.loads(self.data) return self...
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Returns de-JSONed data or None if it's a different content type.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/fetch_worker.py#L106-L115
train
bslatkin/dpxdt
dpxdt/tools/local_pdiff.py
CaptureAndDiffWorkflowItem.maybe_imgur
def maybe_imgur(self, path): '''Uploads a file to imgur if requested via command line flags. Returns either "path" or "path url" depending on the course of action. ''' if not FLAGS.imgur_client_id: return path im = pyimgur.Imgur(FLAGS.imgur_client_id) upload...
python
def maybe_imgur(self, path): '''Uploads a file to imgur if requested via command line flags. Returns either "path" or "path url" depending on the course of action. ''' if not FLAGS.imgur_client_id: return path im = pyimgur.Imgur(FLAGS.imgur_client_id) upload...
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Uploads a file to imgur if requested via command line flags. Returns either "path" or "path url" depending on the course of action.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/tools/local_pdiff.py#L254-L264
train
bslatkin/dpxdt
dpxdt/tools/diff_my_images.py
real_main
def real_main(release_url=None, tests_json_path=None, upload_build_id=None, upload_release_name=None): """Runs diff_my_images.""" coordinator = workers.get_coordinator() fetch_worker.register(coordinator) coordinator.start() data = open(FLAGS.tests_json_pat...
python
def real_main(release_url=None, tests_json_path=None, upload_build_id=None, upload_release_name=None): """Runs diff_my_images.""" coordinator = workers.get_coordinator() fetch_worker.register(coordinator) coordinator.start() data = open(FLAGS.tests_json_pat...
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Runs diff_my_images.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/tools/diff_my_images.py#L175-L198
train
bslatkin/dpxdt
dpxdt/tools/site_diff.py
clean_url
def clean_url(url, force_scheme=None): """Cleans the given URL.""" # URL should be ASCII according to RFC 3986 url = str(url) # Collapse ../../ and related url_parts = urlparse.urlparse(url) path_parts = [] for part in url_parts.path.split('/'): if part == '.': continue ...
python
def clean_url(url, force_scheme=None): """Cleans the given URL.""" # URL should be ASCII according to RFC 3986 url = str(url) # Collapse ../../ and related url_parts = urlparse.urlparse(url) path_parts = [] for part in url_parts.path.split('/'): if part == '.': continue ...
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Cleans the given URL.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/tools/site_diff.py#L105-L135
train
bslatkin/dpxdt
dpxdt/tools/site_diff.py
extract_urls
def extract_urls(url, data, unescape=HTMLParser.HTMLParser().unescape): """Extracts the URLs from an HTML document.""" parts = urlparse.urlparse(url) prefix = '%s://%s' % (parts.scheme, parts.netloc) accessed_dir = os.path.dirname(parts.path) if not accessed_dir.endswith('/'): accessed_dir ...
python
def extract_urls(url, data, unescape=HTMLParser.HTMLParser().unescape): """Extracts the URLs from an HTML document.""" parts = urlparse.urlparse(url) prefix = '%s://%s' % (parts.scheme, parts.netloc) accessed_dir = os.path.dirname(parts.path) if not accessed_dir.endswith('/'): accessed_dir ...
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Extracts the URLs from an HTML document.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/tools/site_diff.py#L138-L162
train
bslatkin/dpxdt
dpxdt/tools/site_diff.py
prune_urls
def prune_urls(url_set, start_url, allowed_list, ignored_list): """Prunes URLs that should be ignored.""" result = set() for url in url_set: allowed = False for allow_url in allowed_list: if url.startswith(allow_url): allowed = True break ...
python
def prune_urls(url_set, start_url, allowed_list, ignored_list): """Prunes URLs that should be ignored.""" result = set() for url in url_set: allowed = False for allow_url in allowed_list: if url.startswith(allow_url): allowed = True break ...
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Prunes URLs that should be ignored.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/tools/site_diff.py#L169-L198
train
bslatkin/dpxdt
dpxdt/tools/site_diff.py
real_main
def real_main(start_url=None, ignore_prefixes=None, upload_build_id=None, upload_release_name=None): """Runs the site_diff.""" coordinator = workers.get_coordinator() fetch_worker.register(coordinator) coordinator.start() item = SiteDiff( start_url=...
python
def real_main(start_url=None, ignore_prefixes=None, upload_build_id=None, upload_release_name=None): """Runs the site_diff.""" coordinator = workers.get_coordinator() fetch_worker.register(coordinator) coordinator.start() item = SiteDiff( start_url=...
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Runs the site_diff.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/tools/site_diff.py#L328-L348
train
bslatkin/dpxdt
dpxdt/server/emails.py
render_or_send
def render_or_send(func, message): """Renders an email message for debugging or actually sends it.""" if request.endpoint != func.func_name: mail.send(message) if (current_user.is_authenticated() and current_user.superuser): return render_template('debug_email.html', message=message)
python
def render_or_send(func, message): """Renders an email message for debugging or actually sends it.""" if request.endpoint != func.func_name: mail.send(message) if (current_user.is_authenticated() and current_user.superuser): return render_template('debug_email.html', message=message)
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Renders an email message for debugging or actually sends it.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/emails.py#L33-L39
train
bslatkin/dpxdt
dpxdt/server/emails.py
send_ready_for_review
def send_ready_for_review(build_id, release_name, release_number): """Sends an email indicating that the release is ready for review.""" build = models.Build.query.get(build_id) if not build.send_email: logging.debug( 'Not sending ready for review email because build does not have ' ...
python
def send_ready_for_review(build_id, release_name, release_number): """Sends an email indicating that the release is ready for review.""" build = models.Build.query.get(build_id) if not build.send_email: logging.debug( 'Not sending ready for review email because build does not have ' ...
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Sends an email indicating that the release is ready for review.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/emails.py#L45-L96
train
bslatkin/dpxdt
dpxdt/server/frontend.py
homepage
def homepage(): """Renders the homepage.""" if current_user.is_authenticated(): if not login_fresh(): logging.debug('User needs a fresh token') abort(login.needs_refresh()) auth.claim_invitations(current_user) build_list = operations.UserOps(current_user.get_id()).g...
python
def homepage(): """Renders the homepage.""" if current_user.is_authenticated(): if not login_fresh(): logging.debug('User needs a fresh token') abort(login.needs_refresh()) auth.claim_invitations(current_user) build_list = operations.UserOps(current_user.get_id()).g...
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Renders the homepage.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/frontend.py#L55-L68
train
bslatkin/dpxdt
dpxdt/server/frontend.py
new_build
def new_build(): """Page for crediting or editing a build.""" form = forms.BuildForm() if form.validate_on_submit(): build = models.Build() form.populate_obj(build) build.owners.append(current_user) db.session.add(build) db.session.flush() auth.save_admin_lo...
python
def new_build(): """Page for crediting or editing a build.""" form = forms.BuildForm() if form.validate_on_submit(): build = models.Build() form.populate_obj(build) build.owners.append(current_user) db.session.add(build) db.session.flush() auth.save_admin_lo...
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Page for crediting or editing a build.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/frontend.py#L73-L96
train
bslatkin/dpxdt
dpxdt/server/frontend.py
view_build
def view_build(): """Page for viewing all releases in a build.""" build = g.build page_size = min(request.args.get('page_size', 10, type=int), 50) offset = request.args.get('offset', 0, type=int) ops = operations.BuildOps(build.id) has_next_page, candidate_list, stats_counts = ops.get_candidate...
python
def view_build(): """Page for viewing all releases in a build.""" build = g.build page_size = min(request.args.get('page_size', 10, type=int), 50) offset = request.args.get('offset', 0, type=int) ops = operations.BuildOps(build.id) has_next_page, candidate_list, stats_counts = ops.get_candidate...
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Page for viewing all releases in a build.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/frontend.py#L101-L154
train
bslatkin/dpxdt
dpxdt/server/frontend.py
view_release
def view_release(): """Page for viewing all tests runs in a release.""" build = g.build if request.method == 'POST': form = forms.ReleaseForm(request.form) else: form = forms.ReleaseForm(request.args) form.validate() ops = operations.BuildOps(build.id) release, run_list, st...
python
def view_release(): """Page for viewing all tests runs in a release.""" build = g.build if request.method == 'POST': form = forms.ReleaseForm(request.form) else: form = forms.ReleaseForm(request.args) form.validate() ops = operations.BuildOps(build.id) release, run_list, st...
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Page for viewing all tests runs in a release.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/frontend.py#L159-L221
train
bslatkin/dpxdt
dpxdt/server/frontend.py
_get_artifact_context
def _get_artifact_context(run, file_type): """Gets the artifact details for the given run and file_type.""" sha1sum = None image_file = False log_file = False config_file = False if request.path == '/image': image_file = True if file_type == 'before': sha1sum = run.r...
python
def _get_artifact_context(run, file_type): """Gets the artifact details for the given run and file_type.""" sha1sum = None image_file = False log_file = False config_file = False if request.path == '/image': image_file = True if file_type == 'before': sha1sum = run.r...
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Gets the artifact details for the given run and file_type.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/frontend.py#L224-L260
train
bslatkin/dpxdt
dpxdt/client/workers.py
get_coordinator
def get_coordinator(): """Creates a coordinator and returns it.""" workflow_queue = Queue.Queue() complete_queue = Queue.Queue() coordinator = WorkflowThread(workflow_queue, complete_queue) coordinator.register(WorkflowItem, workflow_queue) return coordinator
python
def get_coordinator(): """Creates a coordinator and returns it.""" workflow_queue = Queue.Queue() complete_queue = Queue.Queue() coordinator = WorkflowThread(workflow_queue, complete_queue) coordinator.register(WorkflowItem, workflow_queue) return coordinator
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L553-L559
train
bslatkin/dpxdt
dpxdt/client/workers.py
WorkItem._print_repr
def _print_repr(self, depth): """Print this WorkItem to the given stack depth. The depth parameter ensures that we can print WorkItems in arbitrarily long chains without hitting the max stack depth. This can happen with WaitForUrlWorkflowItems, which create long chains of small ...
python
def _print_repr(self, depth): """Print this WorkItem to the given stack depth. The depth parameter ensures that we can print WorkItems in arbitrarily long chains without hitting the max stack depth. This can happen with WaitForUrlWorkflowItems, which create long chains of small ...
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Print this WorkItem to the given stack depth. The depth parameter ensures that we can print WorkItems in arbitrarily long chains without hitting the max stack depth. This can happen with WaitForUrlWorkflowItems, which create long chains of small waits.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L74-L92
train
bslatkin/dpxdt
dpxdt/client/workers.py
ResultList.error
def error(self): """Returns the error for this barrier and all work items, if any.""" # Copy the error from any failed item to be the error for the whole # barrier. The first error seen "wins". Also handles the case where # the WorkItems passed into the barrier have already completed and...
python
def error(self): """Returns the error for this barrier and all work items, if any.""" # Copy the error from any failed item to be the error for the whole # barrier. The first error seen "wins". Also handles the case where # the WorkItems passed into the barrier have already completed and...
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Returns the error for this barrier and all work items, if any.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L227-L236
train
bslatkin/dpxdt
dpxdt/client/workers.py
Barrier.outstanding
def outstanding(self): """Returns whether or not this barrier has pending work.""" # Allow the same WorkItem to be yielded multiple times but not # count towards blocking the barrier. done_count = 0 for item in self: if not self.wait_any and item.fire_and_forget: ...
python
def outstanding(self): """Returns whether or not this barrier has pending work.""" # Allow the same WorkItem to be yielded multiple times but not # count towards blocking the barrier. done_count = 0 for item in self: if not self.wait_any and item.fire_and_forget: ...
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Returns whether or not this barrier has pending work.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L274-L295
train
bslatkin/dpxdt
dpxdt/client/workers.py
Barrier.get_item
def get_item(self): """Returns the item to send back into the workflow generator.""" if self.was_list: result = ResultList() for item in self: if isinstance(item, WorkflowItem): if item.done and not item.error: result.ap...
python
def get_item(self): """Returns the item to send back into the workflow generator.""" if self.was_list: result = ResultList() for item in self: if isinstance(item, WorkflowItem): if item.done and not item.error: result.ap...
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Returns the item to send back into the workflow generator.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L297-L314
train
bslatkin/dpxdt
dpxdt/client/workers.py
WorkflowThread.start
def start(self): """Starts the coordinator thread and all related worker threads.""" assert not self.interrupted for thread in self.worker_threads: thread.start() WorkerThread.start(self)
python
def start(self): """Starts the coordinator thread and all related worker threads.""" assert not self.interrupted for thread in self.worker_threads: thread.start() WorkerThread.start(self)
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Starts the coordinator thread and all related worker threads.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L429-L434
train
bslatkin/dpxdt
dpxdt/client/workers.py
WorkflowThread.stop
def stop(self): """Stops the coordinator thread and all related threads.""" if self.interrupted: return for thread in self.worker_threads: thread.interrupted = True self.interrupted = True
python
def stop(self): """Stops the coordinator thread and all related threads.""" if self.interrupted: return for thread in self.worker_threads: thread.interrupted = True self.interrupted = True
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L436-L442
train
bslatkin/dpxdt
dpxdt/client/workers.py
WorkflowThread.join
def join(self): """Joins the coordinator thread and all worker threads.""" for thread in self.worker_threads: thread.join() WorkerThread.join(self)
python
def join(self): """Joins the coordinator thread and all worker threads.""" for thread in self.worker_threads: thread.join() WorkerThread.join(self)
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Joins the coordinator thread and all worker threads.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L444-L448
train
bslatkin/dpxdt
dpxdt/client/workers.py
WorkflowThread.wait_one
def wait_one(self): """Waits until this worker has finished one work item or died.""" while True: try: item = self.output_queue.get(True, self.polltime) except Queue.Empty: continue except KeyboardInterrupt: LOGGER.debug...
python
def wait_one(self): """Waits until this worker has finished one work item or died.""" while True: try: item = self.output_queue.get(True, self.polltime) except Queue.Empty: continue except KeyboardInterrupt: LOGGER.debug...
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Waits until this worker has finished one work item or died.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/workers.py#L450-L462
train
bslatkin/dpxdt
dpxdt/server/auth.py
superuser_required
def superuser_required(f): """Requires the requestor to be a super user.""" @functools.wraps(f) @login_required def wrapped(*args, **kwargs): if not (current_user.is_authenticated() and current_user.superuser): abort(403) return f(*args, **kwargs) return wrapped
python
def superuser_required(f): """Requires the requestor to be a super user.""" @functools.wraps(f) @login_required def wrapped(*args, **kwargs): if not (current_user.is_authenticated() and current_user.superuser): abort(403) return f(*args, **kwargs) return wrapped
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Requires the requestor to be a super user.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L174-L182
train
bslatkin/dpxdt
dpxdt/server/auth.py
can_user_access_build
def can_user_access_build(param_name): """Determines if the current user can access the build ID in the request. Args: param_name: Parameter name to use for getting the build ID from the request. Will fetch from GET or POST requests. Returns: The build the user has access to. ...
python
def can_user_access_build(param_name): """Determines if the current user can access the build ID in the request. Args: param_name: Parameter name to use for getting the build ID from the request. Will fetch from GET or POST requests. Returns: The build the user has access to. ...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L185-L236
train
bslatkin/dpxdt
dpxdt/server/auth.py
build_access_required
def build_access_required(function_or_param_name): """Decorator ensures user has access to the build ID in the request. May be used in two ways: @build_access_required def my_func(build): ... @build_access_required('custom_build_id_param') def my_func(build): ...
python
def build_access_required(function_or_param_name): """Decorator ensures user has access to the build ID in the request. May be used in two ways: @build_access_required def my_func(build): ... @build_access_required('custom_build_id_param') def my_func(build): ...
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Decorator ensures user has access to the build ID in the request. May be used in two ways: @build_access_required def my_func(build): ... @build_access_required('custom_build_id_param') def my_func(build): ... Always calls the given function with the m...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L239-L268
train
bslatkin/dpxdt
dpxdt/server/auth.py
_get_api_key_ops
def _get_api_key_ops(): """Gets the operations.ApiKeyOps instance for the current request.""" auth_header = request.authorization if not auth_header: logging.debug('API request lacks authorization header') abort(flask.Response( 'API key required', 401, {'WWW-Authentic...
python
def _get_api_key_ops(): """Gets the operations.ApiKeyOps instance for the current request.""" auth_header = request.authorization if not auth_header: logging.debug('API request lacks authorization header') abort(flask.Response( 'API key required', 401, {'WWW-Authentic...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L271-L280
train
bslatkin/dpxdt
dpxdt/server/auth.py
current_api_key
def current_api_key(): """Determines the API key for the current request. Returns: The ApiKey instance. """ if app.config.get('IGNORE_AUTH'): return models.ApiKey( id='anonymous_superuser', secret='', superuser=True) ops = _get_api_key_ops() ...
python
def current_api_key(): """Determines the API key for the current request. Returns: The ApiKey instance. """ if app.config.get('IGNORE_AUTH'): return models.ApiKey( id='anonymous_superuser', secret='', superuser=True) ops = _get_api_key_ops() ...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L283-L299
train
bslatkin/dpxdt
dpxdt/server/auth.py
can_api_key_access_build
def can_api_key_access_build(param_name): """Determines if the current API key can access the build in the request. Args: param_name: Parameter name to use for getting the build ID from the request. Will fetch from GET or POST requests. Returns: (api_key, build) The API Key and...
python
def can_api_key_access_build(param_name): """Determines if the current API key can access the build in the request. Args: param_name: Parameter name to use for getting the build ID from the request. Will fetch from GET or POST requests. Returns: (api_key, build) The API Key and...
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Determines if the current API key can access the build in the request. Args: param_name: Parameter name to use for getting the build ID from the request. Will fetch from GET or POST requests. Returns: (api_key, build) The API Key and the Build it has access to.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L302-L329
train
bslatkin/dpxdt
dpxdt/server/auth.py
build_api_access_required
def build_api_access_required(f): """Decorator ensures API key has access to the build ID in the request. Always calls the given function with the models.Build entity as the first positional argument. """ @functools.wraps(f) def wrapped(*args, **kwargs): g.api_key, g.build = can_api_key...
python
def build_api_access_required(f): """Decorator ensures API key has access to the build ID in the request. Always calls the given function with the models.Build entity as the first positional argument. """ @functools.wraps(f) def wrapped(*args, **kwargs): g.api_key, g.build = can_api_key...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L332-L342
train
bslatkin/dpxdt
dpxdt/server/auth.py
superuser_api_key_required
def superuser_api_key_required(f): """Decorator ensures only superuser API keys can request this function.""" @functools.wraps(f) def wrapped(*args, **kwargs): api_key = current_api_key() g.api_key = api_key utils.jsonify_assert( api_key.superuser, 'API key=%...
python
def superuser_api_key_required(f): """Decorator ensures only superuser API keys can request this function.""" @functools.wraps(f) def wrapped(*args, **kwargs): api_key = current_api_key() g.api_key = api_key utils.jsonify_assert( api_key.superuser, 'API key=%...
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Decorator ensures only superuser API keys can request this function.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L345-L359
train
bslatkin/dpxdt
dpxdt/server/auth.py
manage_api_keys
def manage_api_keys(): """Page for viewing and creating API keys.""" build = g.build create_form = forms.CreateApiKeyForm() if create_form.validate_on_submit(): api_key = models.ApiKey() create_form.populate_obj(api_key) api_key.id = utils.human_uuid() api_key.secret = ut...
python
def manage_api_keys(): """Page for viewing and creating API keys.""" build = g.build create_form = forms.CreateApiKeyForm() if create_form.validate_on_submit(): api_key = models.ApiKey() create_form.populate_obj(api_key) api_key.id = utils.human_uuid() api_key.secret = ut...
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Page for viewing and creating API keys.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L365-L404
train
bslatkin/dpxdt
dpxdt/server/auth.py
revoke_api_key
def revoke_api_key(): """Form submission handler for revoking API keys.""" build = g.build form = forms.RevokeApiKeyForm() if form.validate_on_submit(): api_key = models.ApiKey.query.get(form.id.data) if api_key.build_id != build.id: logging.debug('User does not have access t...
python
def revoke_api_key(): """Form submission handler for revoking API keys.""" build = g.build form = forms.RevokeApiKeyForm() if form.validate_on_submit(): api_key = models.ApiKey.query.get(form.id.data) if api_key.build_id != build.id: logging.debug('User does not have access t...
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Form submission handler for revoking API keys.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L410-L430
train
bslatkin/dpxdt
dpxdt/server/auth.py
claim_invitations
def claim_invitations(user): """Claims any pending invitations for the given user's email address.""" # See if there are any build invitations present for the user with this # email address. If so, replace all those invitations with the real user. invitation_user_id = '%s:%s' % ( models.User.EMA...
python
def claim_invitations(user): """Claims any pending invitations for the given user's email address.""" # See if there are any build invitations present for the user with this # email address. If so, replace all those invitations with the real user. invitation_user_id = '%s:%s' % ( models.User.EMA...
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Claims any pending invitations for the given user's email address.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L433-L463
train
bslatkin/dpxdt
dpxdt/server/auth.py
manage_admins
def manage_admins(): """Page for viewing and managing build admins.""" build = g.build # Do not show cached data db.session.add(build) db.session.refresh(build) add_form = forms.AddAdminForm() if add_form.validate_on_submit(): invitation_user_id = '%s:%s' % ( models.Us...
python
def manage_admins(): """Page for viewing and managing build admins.""" build = g.build # Do not show cached data db.session.add(build) db.session.refresh(build) add_form = forms.AddAdminForm() if add_form.validate_on_submit(): invitation_user_id = '%s:%s' % ( models.Us...
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Page for viewing and managing build admins.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L469-L518
train
bslatkin/dpxdt
dpxdt/server/auth.py
revoke_admin
def revoke_admin(): """Form submission handler for revoking admin access to a build.""" build = g.build form = forms.RemoveAdminForm() if form.validate_on_submit(): user = models.User.query.get(form.user_id.data) if not user: logging.debug('User being revoked admin access doe...
python
def revoke_admin(): """Form submission handler for revoking admin access to a build.""" build = g.build form = forms.RemoveAdminForm() if form.validate_on_submit(): user = models.User.query.get(form.user_id.data) if not user: logging.debug('User being revoked admin access doe...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L524-L558
train
bslatkin/dpxdt
dpxdt/server/auth.py
save_admin_log
def save_admin_log(build, **kwargs): """Saves an action to the admin log.""" message = kwargs.pop('message', None) release = kwargs.pop('release', None) run = kwargs.pop('run', None) if not len(kwargs) == 1: raise TypeError('Must specify a LOG_TYPE argument') log_enum = kwargs.keys()[0...
python
def save_admin_log(build, **kwargs): """Saves an action to the admin log.""" message = kwargs.pop('message', None) release = kwargs.pop('release', None) run = kwargs.pop('run', None) if not len(kwargs) == 1: raise TypeError('Must specify a LOG_TYPE argument') log_enum = kwargs.keys()[0...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L561-L593
train
bslatkin/dpxdt
dpxdt/server/auth.py
view_admin_log
def view_admin_log(): """Page for viewing the log of admin activity.""" build = g.build # TODO: Add paging log_list = ( models.AdminLog.query .filter_by(build_id=build.id) .order_by(models.AdminLog.created.desc()) .all()) return render_template( 'view_admin...
python
def view_admin_log(): """Page for viewing the log of admin activity.""" build = g.build # TODO: Add paging log_list = ( models.AdminLog.query .filter_by(build_id=build.id) .order_by(models.AdminLog.created.desc()) .all()) return render_template( 'view_admin...
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Page for viewing the log of admin activity.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/auth.py#L599-L614
train
bslatkin/dpxdt
dpxdt/client/utils.py
verify_binary
def verify_binary(flag_name, process_args=None): """Exits the program if the binary from the given flag doesn't run. Args: flag_name: Name of the flag that should be the path to the binary. process_args: Args to pass to the binary to do nothing but verify that it's working correctly...
python
def verify_binary(flag_name, process_args=None): """Exits the program if the binary from the given flag doesn't run. Args: flag_name: Name of the flag that should be the path to the binary. process_args: Args to pass to the binary to do nothing but verify that it's working correctly...
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Exits the program if the binary from the given flag doesn't run. Args: flag_name: Name of the flag that should be the path to the binary. process_args: Args to pass to the binary to do nothing but verify that it's working correctly (something like "--version") is good. Optio...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/client/utils.py#L28-L57
train
bslatkin/dpxdt
dpxdt/server/api.py
create_release
def create_release(): """Creates a new release candidate for a build.""" build = g.build release_name = request.form.get('release_name') utils.jsonify_assert(release_name, 'release_name required') url = request.form.get('url') utils.jsonify_assert(release_name, 'url required') release = mod...
python
def create_release(): """Creates a new release candidate for a build.""" build = g.build release_name = request.form.get('release_name') utils.jsonify_assert(release_name, 'release_name required') url = request.form.get('url') utils.jsonify_assert(release_name, 'url required') release = mod...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L109-L154
train
bslatkin/dpxdt
dpxdt/server/api.py
_check_release_done_processing
def _check_release_done_processing(release): """Moves a release candidate to reviewing if all runs are done.""" if release.status != models.Release.PROCESSING: # NOTE: This statement also guards for situations where the user has # prematurely specified that the release is good or bad. Once the u...
python
def _check_release_done_processing(release): """Moves a release candidate to reviewing if all runs are done.""" if release.status != models.Release.PROCESSING: # NOTE: This statement also guards for situations where the user has # prematurely specified that the release is good or bad. Once the u...
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Moves a release candidate to reviewing if all runs are done.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L157-L197
train
bslatkin/dpxdt
dpxdt/server/api.py
_get_release_params
def _get_release_params(): """Gets the release params from the current request.""" release_name = request.form.get('release_name') utils.jsonify_assert(release_name, 'release_name required') release_number = request.form.get('release_number', type=int) utils.jsonify_assert(release_number is not None...
python
def _get_release_params(): """Gets the release params from the current request.""" release_name = request.form.get('release_name') utils.jsonify_assert(release_name, 'release_name required') release_number = request.form.get('release_number', type=int) utils.jsonify_assert(release_number is not None...
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Gets the release params from the current request.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L200-L206
train
bslatkin/dpxdt
dpxdt/server/api.py
_find_last_good_run
def _find_last_good_run(build): """Finds the last good release and run for a build.""" run_name = request.form.get('run_name', type=str) utils.jsonify_assert(run_name, 'run_name required') last_good_release = ( models.Release.query .filter_by( build_id=build.id, ...
python
def _find_last_good_run(build): """Finds the last good release and run for a build.""" run_name = request.form.get('run_name', type=str) utils.jsonify_assert(run_name, 'run_name required') last_good_release = ( models.Release.query .filter_by( build_id=build.id, ...
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Finds the last good release and run for a build.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L209-L240
train
bslatkin/dpxdt
dpxdt/server/api.py
find_run
def find_run(): """Finds the last good run of the given name for a release.""" build = g.build last_good_release, last_good_run = _find_last_good_run(build) if last_good_run: return flask.jsonify( success=True, build_id=build.id, release_name=last_good_releas...
python
def find_run(): """Finds the last good run of the given name for a release.""" build = g.build last_good_release, last_good_run = _find_last_good_run(build) if last_good_run: return flask.jsonify( success=True, build_id=build.id, release_name=last_good_releas...
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Finds the last good run of the given name for a release.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L245-L262
train
bslatkin/dpxdt
dpxdt/server/api.py
_get_or_create_run
def _get_or_create_run(build): """Gets a run for a build or creates it if it does not exist.""" release_name, release_number = _get_release_params() run_name = request.form.get('run_name', type=str) utils.jsonify_assert(run_name, 'run_name required') release = ( models.Release.query ...
python
def _get_or_create_run(build): """Gets a run for a build or creates it if it does not exist.""" release_name, release_number = _get_release_params() run_name = request.form.get('run_name', type=str) utils.jsonify_assert(run_name, 'run_name required') release = ( models.Release.query ...
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Gets a run for a build or creates it if it does not exist.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L265-L293
train
bslatkin/dpxdt
dpxdt/server/api.py
_enqueue_capture
def _enqueue_capture(build, release, run, url, config_data, baseline=False): """Enqueues a task to run a capture process.""" # Validate the JSON config parses. try: config_dict = json.loads(config_data) except Exception, e: abort(utils.jsonify_error(e)) # Rewrite the config JSON to ...
python
def _enqueue_capture(build, release, run, url, config_data, baseline=False): """Enqueues a task to run a capture process.""" # Validate the JSON config parses. try: config_dict = json.loads(config_data) except Exception, e: abort(utils.jsonify_error(e)) # Rewrite the config JSON to ...
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Enqueues a task to run a capture process.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L296-L344
train
bslatkin/dpxdt
dpxdt/server/api.py
request_run
def request_run(): """Requests a new run for a release candidate.""" build = g.build current_release, current_run = _get_or_create_run(build) current_url = request.form.get('url', type=str) config_data = request.form.get('config', default='{}', type=str) utils.jsonify_assert(current_url, 'url t...
python
def request_run(): """Requests a new run for a release candidate.""" build = g.build current_release, current_run = _get_or_create_run(build) current_url = request.form.get('url', type=str) config_data = request.form.get('config', default='{}', type=str) utils.jsonify_assert(current_url, 'url t...
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Requests a new run for a release candidate.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L350-L396
train
bslatkin/dpxdt
dpxdt/server/api.py
runs_done
def runs_done(): """Marks a release candidate as having all runs reported.""" build = g.build release_name, release_number = _get_release_params() release = ( models.Release.query .filter_by(build_id=build.id, name=release_name, number=release_number) .with_lockmode('update') ...
python
def runs_done(): """Marks a release candidate as having all runs reported.""" build = g.build release_name, release_number = _get_release_params() release = ( models.Release.query .filter_by(build_id=build.id, name=release_name, number=release_number) .with_lockmode('update') ...
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Marks a release candidate as having all runs reported.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L531-L562
train
bslatkin/dpxdt
dpxdt/server/api.py
_save_artifact
def _save_artifact(build, data, content_type): """Saves an artifact to the DB and returns it.""" sha1sum = hashlib.sha1(data).hexdigest() artifact = models.Artifact.query.filter_by(id=sha1sum).first() if artifact: logging.debug('Upload already exists: artifact_id=%r', sha1sum) else: log...
python
def _save_artifact(build, data, content_type): """Saves an artifact to the DB and returns it.""" sha1sum = hashlib.sha1(data).hexdigest() artifact = models.Artifact.query.filter_by(id=sha1sum).first() if artifact: logging.debug('Upload already exists: artifact_id=%r', sha1sum) else: log...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L575-L592
train
bslatkin/dpxdt
dpxdt/server/api.py
upload
def upload(): """Uploads an artifact referenced by a run.""" build = g.build utils.jsonify_assert(len(request.files) == 1, 'Need exactly one uploaded file') file_storage = request.files.values()[0] data = file_storage.read() content_type, _ = mimetypes.guess_type(file_s...
python
def upload(): """Uploads an artifact referenced by a run.""" build = g.build utils.jsonify_assert(len(request.files) == 1, 'Need exactly one uploaded file') file_storage = request.files.values()[0] data = file_storage.read() content_type, _ = mimetypes.guess_type(file_s...
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Uploads an artifact referenced by a run.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L598-L617
train
bslatkin/dpxdt
dpxdt/server/api.py
_get_artifact_response
def _get_artifact_response(artifact): """Gets the response object for the given artifact. This method may be overridden in environments that have a different way of storing artifact files, such as on-disk or S3. """ response = flask.Response( artifact.data, mimetype=artifact.content...
python
def _get_artifact_response(artifact): """Gets the response object for the given artifact. This method may be overridden in environments that have a different way of storing artifact files, such as on-disk or S3. """ response = flask.Response( artifact.data, mimetype=artifact.content...
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L620-L632
train
bslatkin/dpxdt
dpxdt/server/api.py
download
def download(): """Downloads an artifact by it's content hash.""" # Allow users with access to the build to download the file. Falls back # to API keys with access to the build. Prefer user first for speed. try: build = auth.can_user_access_build('build_id') except HTTPException: log...
python
def download(): """Downloads an artifact by it's content hash.""" # Allow users with access to the build to download the file. Falls back # to API keys with access to the build. Prefer user first for speed. try: build = auth.can_user_access_build('build_id') except HTTPException: log...
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Downloads an artifact by it's content hash.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/api.py#L636-L682
train
bslatkin/dpxdt
dpxdt/server/operations.py
BaseOps.evict
def evict(self): """Evict all caches related to these operations.""" logging.debug('Evicting cache for %r', self.cache_key) _clear_version_cache(self.cache_key) # Cause the cache key to be refreshed next time any operation is # run to make sure we don't act on old cached data. ...
python
def evict(self): """Evict all caches related to these operations.""" logging.debug('Evicting cache for %r', self.cache_key) _clear_version_cache(self.cache_key) # Cause the cache key to be refreshed next time any operation is # run to make sure we don't act on old cached data. ...
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Evict all caches related to these operations.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/operations.py#L72-L78
train
bslatkin/dpxdt
dpxdt/server/operations.py
BuildOps.sort_run
def sort_run(run): """Sort function for runs within a release.""" # Sort errors first, then by name. Also show errors that were manually # approved, so the paging sort order stays the same even after users # approve a diff on the run page. if run.status in models.Run.DIFF_NEEDED_...
python
def sort_run(run): """Sort function for runs within a release.""" # Sort errors first, then by name. Also show errors that were manually # approved, so the paging sort order stays the same even after users # approve a diff on the run page. if run.status in models.Run.DIFF_NEEDED_...
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Sort function for runs within a release.
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9f860de1731021d99253670429e5f2157e1f6297
https://github.com/bslatkin/dpxdt/blob/9f860de1731021d99253670429e5f2157e1f6297/dpxdt/server/operations.py#L170-L177
train
podio/valideer
valideer/base.py
parse
def parse(obj, required_properties=None, additional_properties=None, ignore_optional_property_errors=None): """Try to parse the given ``obj`` as a validator instance. :param obj: The object to be parsed. If it is a...: - :py:class:`Validator` instance, return it. - :py:class:`Validat...
python
def parse(obj, required_properties=None, additional_properties=None, ignore_optional_property_errors=None): """Try to parse the given ``obj`` as a validator instance. :param obj: The object to be parsed. If it is a...: - :py:class:`Validator` instance, return it. - :py:class:`Validat...
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d35be173cb40c9fa1adb879673786b346b6841db
https://github.com/podio/valideer/blob/d35be173cb40c9fa1adb879673786b346b6841db/valideer/base.py#L60-L165
train
podio/valideer
valideer/base.py
parsing
def parsing(**kwargs): """ Context manager for overriding the default validator parsing rules for the following code block. """ from .validators import Object with _VALIDATOR_FACTORIES_LOCK: old_values = {} for key, value in iteritems(kwargs): if value is not None: ...
python
def parsing(**kwargs): """ Context manager for overriding the default validator parsing rules for the following code block. """ from .validators import Object with _VALIDATOR_FACTORIES_LOCK: old_values = {} for key, value in iteritems(kwargs): if value is not None: ...
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Context manager for overriding the default validator parsing rules for the following code block.
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d35be173cb40c9fa1adb879673786b346b6841db
https://github.com/podio/valideer/blob/d35be173cb40c9fa1adb879673786b346b6841db/valideer/base.py#L169-L188
train
podio/valideer
valideer/base.py
register
def register(name, validator): """Register a validator instance under the given ``name``.""" if not isinstance(validator, Validator): raise TypeError("Validator instance expected, %s given" % validator.__class__) _NAMED_VALIDATORS[name] = validator
python
def register(name, validator): """Register a validator instance under the given ``name``.""" if not isinstance(validator, Validator): raise TypeError("Validator instance expected, %s given" % validator.__class__) _NAMED_VALIDATORS[name] = validator
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Register a validator instance under the given ``name``.
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d35be173cb40c9fa1adb879673786b346b6841db
https://github.com/podio/valideer/blob/d35be173cb40c9fa1adb879673786b346b6841db/valideer/base.py#L191-L195
train
podio/valideer
valideer/base.py
accepts
def accepts(**schemas): """Create a decorator for validating function parameters. Example:: @accepts(a="number", body={"+field_ids": [int], "is_ok": bool}) def f(a, body): print (a, body["field_ids"], body.get("is_ok")) :param schemas: The schema for validating a given paramet...
python
def accepts(**schemas): """Create a decorator for validating function parameters. Example:: @accepts(a="number", body={"+field_ids": [int], "is_ok": bool}) def f(a, body): print (a, body["field_ids"], body.get("is_ok")) :param schemas: The schema for validating a given paramet...
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Create a decorator for validating function parameters. Example:: @accepts(a="number", body={"+field_ids": [int], "is_ok": bool}) def f(a, body): print (a, body["field_ids"], body.get("is_ok")) :param schemas: The schema for validating a given parameter.
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d35be173cb40c9fa1adb879673786b346b6841db
https://github.com/podio/valideer/blob/d35be173cb40c9fa1adb879673786b346b6841db/valideer/base.py#L272-L289
train
podio/valideer
valideer/base.py
returns
def returns(schema): """Create a decorator for validating function return value. Example:: @accepts(a=int, b=int) @returns(int) def f(a, b): return a + b :param schema: The schema for adapting a given parameter. """ validate = parse(schema).validate @decora...
python
def returns(schema): """Create a decorator for validating function return value. Example:: @accepts(a=int, b=int) @returns(int) def f(a, b): return a + b :param schema: The schema for adapting a given parameter. """ validate = parse(schema).validate @decora...
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Create a decorator for validating function return value. Example:: @accepts(a=int, b=int) @returns(int) def f(a, b): return a + b :param schema: The schema for adapting a given parameter.
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d35be173cb40c9fa1adb879673786b346b6841db
https://github.com/podio/valideer/blob/d35be173cb40c9fa1adb879673786b346b6841db/valideer/base.py#L292-L310
train
podio/valideer
valideer/base.py
adapts
def adapts(**schemas): """Create a decorator for validating and adapting function parameters. Example:: @adapts(a="number", body={"+field_ids": [V.AdaptTo(int)], "is_ok": bool}) def f(a, body): print (a, body.field_ids, body.is_ok) :param schemas: The schema for adapting a giv...
python
def adapts(**schemas): """Create a decorator for validating and adapting function parameters. Example:: @adapts(a="number", body={"+field_ids": [V.AdaptTo(int)], "is_ok": bool}) def f(a, body): print (a, body.field_ids, body.is_ok) :param schemas: The schema for adapting a giv...
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Create a decorator for validating and adapting function parameters. Example:: @adapts(a="number", body={"+field_ids": [V.AdaptTo(int)], "is_ok": bool}) def f(a, body): print (a, body.field_ids, body.is_ok) :param schemas: The schema for adapting a given parameter.
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d35be173cb40c9fa1adb879673786b346b6841db
https://github.com/podio/valideer/blob/d35be173cb40c9fa1adb879673786b346b6841db/valideer/base.py#L313-L346
train
HumanCellAtlas/dcp-cli
hca/upload/lib/client_side_checksum_handler.py
ClientSideChecksumHandler.get_checksum_metadata_tag
def get_checksum_metadata_tag(self): """ Returns a map of checksum values by the name of the hashing function that produced it.""" if not self._checksums: print("Warning: No checksums have been computed for this file.") return {str(_hash_name): str(_hash_value) for _hash_name, _hash_...
python
def get_checksum_metadata_tag(self): """ Returns a map of checksum values by the name of the hashing function that produced it.""" if not self._checksums: print("Warning: No checksums have been computed for this file.") return {str(_hash_name): str(_hash_value) for _hash_name, _hash_...
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Returns a map of checksum values by the name of the hashing function that produced it.
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/client_side_checksum_handler.py#L20-L24
train
HumanCellAtlas/dcp-cli
hca/upload/lib/client_side_checksum_handler.py
ClientSideChecksumHandler.compute_checksum
def compute_checksum(self): """ Calculates checksums for a given file. """ if self._filename.startswith("s3://"): print("Warning: Did not perform client-side checksumming for file in S3. To be implemented.") pass else: checksumCalculator = self.ChecksumCalcula...
python
def compute_checksum(self): """ Calculates checksums for a given file. """ if self._filename.startswith("s3://"): print("Warning: Did not perform client-side checksumming for file in S3. To be implemented.") pass else: checksumCalculator = self.ChecksumCalcula...
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Calculates checksums for a given file.
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/client_side_checksum_handler.py#L26-L33
train
HumanCellAtlas/dcp-cli
hca/upload/upload_area.py
UploadArea.upload_files
def upload_files(self, file_paths, file_size_sum=0, dcp_type="data", target_filename=None, use_transfer_acceleration=True, report_progress=False, sync=True): """ A function that takes in a list of file paths and other optional args for parallel file upload """ self._...
python
def upload_files(self, file_paths, file_size_sum=0, dcp_type="data", target_filename=None, use_transfer_acceleration=True, report_progress=False, sync=True): """ A function that takes in a list of file paths and other optional args for parallel file upload """ self._...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/upload_area.py#L109-L138
train
HumanCellAtlas/dcp-cli
hca/upload/upload_area.py
UploadArea.validation_status
def validation_status(self, filename): """ Get status and results of latest validation job for a file. :param str filename: The name of the file within the Upload Area :return: a dict with validation information :rtype: dict :raises UploadApiException: if information cou...
python
def validation_status(self, filename): """ Get status and results of latest validation job for a file. :param str filename: The name of the file within the Upload Area :return: a dict with validation information :rtype: dict :raises UploadApiException: if information cou...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/upload_area.py#L181-L190
train
HumanCellAtlas/dcp-cli
hca/upload/lib/s3_agent.py
S3Agent._item_exists_in_bucket
def _item_exists_in_bucket(self, bucket, key, checksums): """ Returns true if the key already exists in the current bucket and the clientside checksum matches the file's checksums, and false otherwise.""" try: obj = self.target_s3.meta.client.head_object(Bucket=bucket, Key=key) ...
python
def _item_exists_in_bucket(self, bucket, key, checksums): """ Returns true if the key already exists in the current bucket and the clientside checksum matches the file's checksums, and false otherwise.""" try: obj = self.target_s3.meta.client.head_object(Bucket=bucket, Key=key) ...
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Returns true if the key already exists in the current bucket and the clientside checksum matches the file's checksums, and false otherwise.
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/s3_agent.py#L130-L141
train
HumanCellAtlas/dcp-cli
hca/dss/upload_to_cloud.py
upload_to_cloud
def upload_to_cloud(file_handles, staging_bucket, replica, from_cloud=False): """ Upload files to cloud. :param file_handles: If from_cloud, file_handles is a aws s3 directory path to files with appropriate metadata uploaded. Else, a list of binary file_handles to upload. :para...
python
def upload_to_cloud(file_handles, staging_bucket, replica, from_cloud=False): """ Upload files to cloud. :param file_handles: If from_cloud, file_handles is a aws s3 directory path to files with appropriate metadata uploaded. Else, a list of binary file_handles to upload. :para...
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Upload files to cloud. :param file_handles: If from_cloud, file_handles is a aws s3 directory path to files with appropriate metadata uploaded. Else, a list of binary file_handles to upload. :param staging_bucket: The aws bucket to upload the files to. :param replica: The cloud rep...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/dss/upload_to_cloud.py#L53-L102
train
HumanCellAtlas/dcp-cli
hca/dss/__init__.py
DSSClient.download
def download(self, bundle_uuid, replica, version="", download_dir="", metadata_files=('*',), data_files=('*',), num_retries=10, min_delay_seconds=0.25): """ Download a bundle and save it to the local filesystem as a directory. :param str bundle_uuid: The uuid o...
python
def download(self, bundle_uuid, replica, version="", download_dir="", metadata_files=('*',), data_files=('*',), num_retries=10, min_delay_seconds=0.25): """ Download a bundle and save it to the local filesystem as a directory. :param str bundle_uuid: The uuid o...
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Download a bundle and save it to the local filesystem as a directory. :param str bundle_uuid: The uuid of the bundle to download :param str replica: the replica to download from. The supported replicas are: `aws` for Amazon Web Services, and `gcp` for Google Cloud Platform. [aws, gcp] ...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/dss/__init__.py#L87-L140
train
HumanCellAtlas/dcp-cli
hca/dss/__init__.py
DSSClient._download_file
def _download_file(self, dss_file, dest_path, num_retries=10, min_delay_seconds=0.25): """ Attempt to download the data. If a retryable exception occurs, we wait a bit and retry again. The delay increases each time we fail and decreases each time we successfully read a block. We set a quota f...
python
def _download_file(self, dss_file, dest_path, num_retries=10, min_delay_seconds=0.25): """ Attempt to download the data. If a retryable exception occurs, we wait a bit and retry again. The delay increases each time we fail and decreases each time we successfully read a block. We set a quota f...
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Attempt to download the data. If a retryable exception occurs, we wait a bit and retry again. The delay increases each time we fail and decreases each time we successfully read a block. We set a quota for the number of failures that goes up with every successful block read and down with each failure....
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/dss/__init__.py#L211-L237
train
HumanCellAtlas/dcp-cli
hca/dss/__init__.py
DSSClient._do_download_file
def _do_download_file(self, dss_file, fh, num_retries, min_delay_seconds): """ Abstracts away complications for downloading a file, handles retries and delays, and computes its hash """ hasher = hashlib.sha256() delay = min_delay_seconds retries_left = num_retries ...
python
def _do_download_file(self, dss_file, fh, num_retries, min_delay_seconds): """ Abstracts away complications for downloading a file, handles retries and delays, and computes its hash """ hasher = hashlib.sha256() delay = min_delay_seconds retries_left = num_retries ...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/dss/__init__.py#L239-L303
train
HumanCellAtlas/dcp-cli
hca/dss/__init__.py
DSSClient._write_output_manifest
def _write_output_manifest(self, manifest, filestore_root): """ Adds the file path column to the manifest and writes the copy to the current directory. If the original manifest is in the current directory it is overwritten with a warning. """ output = os.path.basename(manifest) ...
python
def _write_output_manifest(self, manifest, filestore_root): """ Adds the file path column to the manifest and writes the copy to the current directory. If the original manifest is in the current directory it is overwritten with a warning. """ output = os.path.basename(manifest) ...
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Adds the file path column to the manifest and writes the copy to the current directory. If the original manifest is in the current directory it is overwritten with a warning.
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/dss/__init__.py#L332-L350
train
HumanCellAtlas/dcp-cli
hca/dss/util/__init__.py
hardlink
def hardlink(source, link_name): """ Create a hardlink in a portable way The code for Windows support is adapted from: https://github.com/sunshowers/ntfs/blob/master/ntfsutils/hardlink.py """ if sys.version_info < (3,) and platform.system() == 'Windows': # pragma: no cover import ctype...
python
def hardlink(source, link_name): """ Create a hardlink in a portable way The code for Windows support is adapted from: https://github.com/sunshowers/ntfs/blob/master/ntfsutils/hardlink.py """ if sys.version_info < (3,) and platform.system() == 'Windows': # pragma: no cover import ctype...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/dss/util/__init__.py#L40-L69
train
HumanCellAtlas/dcp-cli
hca/util/__init__.py
_ClientMethodFactory.request_with_retries_on_post_search
def request_with_retries_on_post_search(self, session, url, query, json_input, stream, headers): """ Submit a request and retry POST search requests specifically. We don't currently retry on POST requests, and this is intended as a temporary fix until the swagger is updated and changes ...
python
def request_with_retries_on_post_search(self, session, url, query, json_input, stream, headers): """ Submit a request and retry POST search requests specifically. We don't currently retry on POST requests, and this is intended as a temporary fix until the swagger is updated and changes ...
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Submit a request and retry POST search requests specifically. We don't currently retry on POST requests, and this is intended as a temporary fix until the swagger is updated and changes applied to prod. In the meantime, this function will add retries specifically for POST search (and any other...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/util/__init__.py#L143-L174
train
HumanCellAtlas/dcp-cli
hca/util/__init__.py
SwaggerClient.refresh_swagger
def refresh_swagger(self): """ Manually refresh the swagger document. This can help resolve errors communicate with the API. """ try: os.remove(self._get_swagger_filename(self.swagger_url)) except EnvironmentError as e: logger.warn(os.strerror(e.errno)) ...
python
def refresh_swagger(self): """ Manually refresh the swagger document. This can help resolve errors communicate with the API. """ try: os.remove(self._get_swagger_filename(self.swagger_url)) except EnvironmentError as e: logger.warn(os.strerror(e.errno)) ...
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Manually refresh the swagger document. This can help resolve errors communicate with the API.
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/util/__init__.py#L335-L344
train
HumanCellAtlas/dcp-cli
hca/upload/upload_config.py
UploadConfig.add_area
def add_area(self, uri): """ Record information about a new Upload Area :param UploadAreaURI uri: An Upload Area URI. """ if uri.area_uuid not in self._config.upload.areas: self._config.upload.areas[uri.area_uuid] = {'uri': uri.uri} self.save()
python
def add_area(self, uri): """ Record information about a new Upload Area :param UploadAreaURI uri: An Upload Area URI. """ if uri.area_uuid not in self._config.upload.areas: self._config.upload.areas[uri.area_uuid] = {'uri': uri.uri} self.save()
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Record information about a new Upload Area :param UploadAreaURI uri: An Upload Area URI.
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/upload_config.py#L97-L105
train
HumanCellAtlas/dcp-cli
hca/upload/upload_config.py
UploadConfig.select_area
def select_area(self, area_uuid): """ Update the "current area" to be the area with this UUID. :param str area_uuid: The RFC4122-compliant UUID of the Upload Area. """ self._config.upload.current_area = area_uuid self.save()
python
def select_area(self, area_uuid): """ Update the "current area" to be the area with this UUID. :param str area_uuid: The RFC4122-compliant UUID of the Upload Area. """ self._config.upload.current_area = area_uuid self.save()
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Update the "current area" to be the area with this UUID. :param str area_uuid: The RFC4122-compliant UUID of the Upload Area.
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/upload_config.py#L107-L115
train
HumanCellAtlas/dcp-cli
hca/upload/lib/api_client.py
ApiClient.create_area
def create_area(self, area_uuid): """ Create an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :return: a dict of the form { "uri": "s3://<bucket_name>/<upload-area-id>/" } :rtype: dict :raises UploadApiException: if the an Upload Area was n...
python
def create_area(self, area_uuid): """ Create an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :return: a dict of the form { "uri": "s3://<bucket_name>/<upload-area-id>/" } :rtype: dict :raises UploadApiException: if the an Upload Area was n...
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Create an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :return: a dict of the form { "uri": "s3://<bucket_name>/<upload-area-id>/" } :rtype: dict :raises UploadApiException: if the an Upload Area was not created
[ "Create", "an", "Upload", "Area" ]
cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/api_client.py#L35-L47
train
HumanCellAtlas/dcp-cli
hca/upload/lib/api_client.py
ApiClient.area_exists
def area_exists(self, area_uuid): """ Check if an Upload Area exists :param str area_uuid: A RFC4122-compliant ID for the upload area :return: True or False :rtype: bool """ response = requests.head(self._url(path="/area/{id}".format(id=area_uuid))) retur...
python
def area_exists(self, area_uuid): """ Check if an Upload Area exists :param str area_uuid: A RFC4122-compliant ID for the upload area :return: True or False :rtype: bool """ response = requests.head(self._url(path="/area/{id}".format(id=area_uuid))) retur...
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Check if an Upload Area exists :param str area_uuid: A RFC4122-compliant ID for the upload area :return: True or False :rtype: bool
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/api_client.py#L49-L58
train
HumanCellAtlas/dcp-cli
hca/upload/lib/api_client.py
ApiClient.delete_area
def delete_area(self, area_uuid): """ Delete an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :return: True :rtype: bool :raises UploadApiException: if the an Upload Area was not deleted """ self._make_request('delete', path...
python
def delete_area(self, area_uuid): """ Delete an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :return: True :rtype: bool :raises UploadApiException: if the an Upload Area was not deleted """ self._make_request('delete', path...
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Delete an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :return: True :rtype: bool :raises UploadApiException: if the an Upload Area was not deleted
[ "Delete", "an", "Upload", "Area" ]
cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/api_client.py#L60-L71
train
HumanCellAtlas/dcp-cli
hca/upload/lib/api_client.py
ApiClient.credentials
def credentials(self, area_uuid): """ Get AWS credentials required to directly upload files to Upload Area in S3 :param str area_uuid: A RFC4122-compliant ID for the upload area :return: a dict containing an AWS AccessKey, SecretKey and SessionToken :rtype: dict :raises ...
python
def credentials(self, area_uuid): """ Get AWS credentials required to directly upload files to Upload Area in S3 :param str area_uuid: A RFC4122-compliant ID for the upload area :return: a dict containing an AWS AccessKey, SecretKey and SessionToken :rtype: dict :raises ...
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Get AWS credentials required to directly upload files to Upload Area in S3 :param str area_uuid: A RFC4122-compliant ID for the upload area :return: a dict containing an AWS AccessKey, SecretKey and SessionToken :rtype: dict :raises UploadApiException: if credentials could not be obtain...
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/api_client.py#L73-L83
train
HumanCellAtlas/dcp-cli
hca/upload/lib/api_client.py
ApiClient.file_upload_notification
def file_upload_notification(self, area_uuid, filename): """ Notify Upload Service that a file has been placed in an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :param str filename: The name the file in the Upload Area :return: True :rtyp...
python
def file_upload_notification(self, area_uuid, filename): """ Notify Upload Service that a file has been placed in an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :param str filename: The name the file in the Upload Area :return: True :rtyp...
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Notify Upload Service that a file has been placed in an Upload Area :param str area_uuid: A RFC4122-compliant ID for the upload area :param str filename: The name the file in the Upload Area :return: True :rtype: bool :raises UploadApiException: if file could not be stored
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cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/api_client.py#L111-L124
train
HumanCellAtlas/dcp-cli
hca/upload/lib/api_client.py
ApiClient.files_info
def files_info(self, area_uuid, file_list): """ Get information about files :param str area_uuid: A RFC4122-compliant ID for the upload area :param list file_list: The names the files in the Upload Area about which we want information :return: an array of file information dicts ...
python
def files_info(self, area_uuid, file_list): """ Get information about files :param str area_uuid: A RFC4122-compliant ID for the upload area :param list file_list: The names the files in the Upload Area about which we want information :return: an array of file information dicts ...
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Get information about files :param str area_uuid: A RFC4122-compliant ID for the upload area :param list file_list: The names the files in the Upload Area about which we want information :return: an array of file information dicts :rtype: list of dicts :raises UploadApiException...
[ "Get", "information", "about", "files" ]
cc70817bc4e50944c709eaae160de0bf7a19f0f3
https://github.com/HumanCellAtlas/dcp-cli/blob/cc70817bc4e50944c709eaae160de0bf7a19f0f3/hca/upload/lib/api_client.py#L126-L139
train