AxoBench v2 minimal: interventions temporal_jitter_j1
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- minimal/interventions/temporal_jitter_j1/manifest.json +2405 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.npz +3 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.json +96 -0
- minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.npz +3 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.json +107 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.npz +3 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.json +107 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.npz +3 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.json +107 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.npz +3 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.json +107 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.npz +3 -0
- minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.json +107 -0
minimal/interventions/temporal_jitter_j1/manifest.json
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| 1 |
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{
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| 2 |
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{
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| 9 |
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| 10 |
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| 11 |
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{
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| 12 |
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| 13 |
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| 15 |
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| 18 |
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| 19 |
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{
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 25 |
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| 26 |
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| 27 |
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{
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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| 34 |
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| 37 |
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| 38 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.json
ADDED
|
@@ -0,0 +1,96 @@
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|
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|
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|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
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|
|
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|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
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|
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|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 4 |
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|
| 5 |
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|
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|
| 7 |
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|
| 8 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
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"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
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|
| 26 |
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"DetGABA.mod",
|
| 27 |
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| 28 |
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|
| 29 |
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"K_Pst.mod",
|
| 30 |
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|
| 31 |
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|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
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|
| 34 |
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| 35 |
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| 42 |
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|
| 43 |
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|
| 44 |
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| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
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"input_routing": {
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| 52 |
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"all_traces_identical": true,
|
| 53 |
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"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
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"duplicated_source_sites_per_sign": {
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| 55 |
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| 60 |
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"max": 999,
|
| 61 |
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"mean": 999.0,
|
| 62 |
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"min": 999
|
| 63 |
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},
|
| 64 |
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"n_traces": 2,
|
| 65 |
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"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
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"max": 639,
|
| 68 |
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"mean": 639.0,
|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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"unique_source_sites_per_sign": {
|
| 73 |
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"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
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},
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"unused_source_sites_per_sign": {
|
| 78 |
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|
| 79 |
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|
| 80 |
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"min": 0
|
| 81 |
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},
|
| 82 |
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"used_sites_per_sign": {
|
| 83 |
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"max": 639,
|
| 84 |
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"mean": 639.0,
|
| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
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"kind": "intervention",
|
| 91 |
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"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
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"shard_index": 838,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.npz
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:1d2f182677c3b5d4c4237f29f0b7c16bda653424086aafb838533fa040b54a4a
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size 1408058
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.json
ADDED
|
@@ -0,0 +1,96 @@
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|
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{
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|
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|
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|
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|
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|
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|
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|
| 20 |
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"integrator": "fixed_step",
|
| 21 |
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"mechanism_files": [
|
| 22 |
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"CaDynamics_E2.mod",
|
| 23 |
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|
| 24 |
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"Ca_LVAst.mod",
|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
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|
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 45 |
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"v_init_mv": -76.0
|
| 48 |
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},
|
| 49 |
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|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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},
|
| 64 |
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|
| 65 |
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"policy": "all_sites_by_type_arclength",
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 839,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:a7dc25c1af66ab10d88919aed9a8a357c9dd1ce2003b6671868866a58d806c99
|
| 3 |
+
size 1440966
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
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|
|
| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 4 |
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|
| 5 |
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|
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|
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| 11 |
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|
| 12 |
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|
| 13 |
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},
|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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"input_routing": "all_sites_by_type",
|
| 19 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
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"Nap_Et2.mod",
|
| 34 |
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"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 45 |
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"teacher": "hay",
|
| 46 |
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|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
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},
|
| 49 |
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|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
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"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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|
| 55 |
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|
| 56 |
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| 57 |
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|
| 58 |
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},
|
| 59 |
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|
| 60 |
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"max": 999,
|
| 61 |
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"mean": 999.0,
|
| 62 |
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"min": 999
|
| 63 |
+
},
|
| 64 |
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"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
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"mean": 639.0,
|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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"unique_source_sites_per_sign": {
|
| 73 |
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"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
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},
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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"min": 0
|
| 81 |
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},
|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
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"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
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"kind": "intervention",
|
| 91 |
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"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
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"shard_index": 840,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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+
oid sha256:f45adb16520a991669668d04dd10baface381ae105db8f81b5c751b0a374823e
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| 3 |
+
size 1471285
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.json
ADDED
|
@@ -0,0 +1,96 @@
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|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
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|
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|
|
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|
|
|
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|
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|
|
|
|
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|
|
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|
|
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|
|
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|
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|
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|
|
|
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|
|
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|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
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|
|
|
|
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|
|
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|
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|
| 1 |
+
{
|
| 2 |
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"backend": "neuron",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
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},
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|
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|
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|
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|
| 18 |
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|
| 19 |
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|
| 20 |
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"integrator": "fixed_step",
|
| 21 |
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"mechanism_files": [
|
| 22 |
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"CaDynamics_E2.mod",
|
| 23 |
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"Ca_HVA.mod",
|
| 24 |
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"Ca_LVAst.mod",
|
| 25 |
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"DetAMPANMDA.mod",
|
| 26 |
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"DetGABA.mod",
|
| 27 |
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"Ih.mod",
|
| 28 |
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"Im.mod",
|
| 29 |
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"K_Pst.mod",
|
| 30 |
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"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
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"Nap_Et2.mod",
|
| 34 |
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"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 41 |
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|
| 42 |
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|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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"teacher": "hay",
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| 47 |
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"v_init_mv": -76.0
|
| 48 |
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},
|
| 49 |
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|
| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
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"input_routing": {
|
| 52 |
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"all_traces_identical": true,
|
| 53 |
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"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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|
| 55 |
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"max": 0,
|
| 56 |
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|
| 57 |
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"min": 0
|
| 58 |
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},
|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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"min": 999
|
| 63 |
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},
|
| 64 |
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|
| 65 |
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"policy": "all_sites_by_type_arclength",
|
| 66 |
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"source_sites_per_sign": {
|
| 67 |
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"max": 639,
|
| 68 |
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|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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"min": 639
|
| 76 |
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},
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"unused_source_sites_per_sign": {
|
| 78 |
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|
| 79 |
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| 80 |
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| 81 |
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},
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|
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|
| 85 |
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}
|
| 87 |
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},
|
| 88 |
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"intervention": "temporal_jitter",
|
| 89 |
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"intervention_dose": 1.0,
|
| 90 |
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"kind": "intervention",
|
| 91 |
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"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
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"samples": 2,
|
| 94 |
+
"shard_index": 841,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:5043262e8694b39384a7330671d52730bebc8b033834a1e8b91e4c574c766f20
|
| 3 |
+
size 1449340
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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"generator": {
|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
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|
| 16 |
+
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|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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| 38 |
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|
| 39 |
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"neuron_version": "9.0.2",
|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
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|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
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},
|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
+
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|
| 61 |
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|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
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"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
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"mean": 639.0,
|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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|
| 73 |
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"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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|
| 76 |
+
},
|
| 77 |
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"unused_source_sites_per_sign": {
|
| 78 |
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|
| 79 |
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|
| 80 |
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"min": 0
|
| 81 |
+
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:ec0ddc56a93c131b15d684a739047ce924d19151c5cadb6fbee5e255bc1ede6e
|
| 3 |
+
size 1412712
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
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|
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|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
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"dirty": false
|
| 13 |
+
},
|
| 14 |
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|
| 15 |
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|
| 16 |
+
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|
| 17 |
+
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|
| 18 |
+
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|
| 19 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
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"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
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"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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|
| 47 |
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|
| 48 |
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},
|
| 49 |
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|
| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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|
| 55 |
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"max": 0,
|
| 56 |
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|
| 57 |
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"min": 0
|
| 58 |
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},
|
| 59 |
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"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
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"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
+
},
|
| 77 |
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"unused_source_sites_per_sign": {
|
| 78 |
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"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
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"min": 0
|
| 81 |
+
},
|
| 82 |
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"used_sites_per_sign": {
|
| 83 |
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"max": 639,
|
| 84 |
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"mean": 639.0,
|
| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
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"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
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"shard_index": 843,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:6acc4414501a107116913387a437cb67055d5aca82c7214b06775b041a0e574a
|
| 3 |
+
size 1418053
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
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|
|
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|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
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|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 292.2022024529979,
|
| 6 |
+
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|
| 7 |
+
"generator": {
|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
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|
| 14 |
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|
| 15 |
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|
| 16 |
+
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|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 39 |
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|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
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"v_init_mv": -76.0
|
| 48 |
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},
|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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"duplicated_source_sites_per_sign": {
|
| 55 |
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|
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| 57 |
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|
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| 59 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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},
|
| 64 |
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"n_traces": 2,
|
| 65 |
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"policy": "all_sites_by_type_arclength",
|
| 66 |
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|
| 67 |
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"max": 639,
|
| 68 |
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|
| 69 |
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|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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|
| 73 |
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|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
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},
|
| 77 |
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"unused_source_sites_per_sign": {
|
| 78 |
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"max": 0,
|
| 79 |
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|
| 80 |
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"min": 0
|
| 81 |
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},
|
| 82 |
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"used_sites_per_sign": {
|
| 83 |
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"max": 639,
|
| 84 |
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"mean": 639.0,
|
| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 844,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.npz
ADDED
|
@@ -0,0 +1,3 @@
|
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|
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|
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|
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|
|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:b13bb8e82d3d697ab31520f5f1717353a058feb2dcfdbc09ac3baf67e1a03c82
|
| 3 |
+
size 1427845
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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"generator": {
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|
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|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
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"dirty": false
|
| 13 |
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},
|
| 14 |
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"data_version": "v2",
|
| 15 |
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|
| 16 |
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|
| 17 |
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"inh_gmax_scale": 1.0,
|
| 18 |
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"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
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"Ih.mod",
|
| 28 |
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"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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| 38 |
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|
| 39 |
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"neuron_version": "9.0.2",
|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
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"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
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"max": 0,
|
| 56 |
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"mean": 0.0,
|
| 57 |
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"min": 0
|
| 58 |
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},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
+
"shard_index": 845,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:132a4ec40d828266b630d955007daaeee95a010d306e28d3e83b79833c029faa
|
| 3 |
+
size 1415067
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 291.8491735259995,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
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"backend": "neuron",
|
| 9 |
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"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
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|
| 16 |
+
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|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
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"neuron_version": "9.0.2",
|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
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"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
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"max": 0,
|
| 56 |
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| 57 |
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| 58 |
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| 59 |
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| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 69 |
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|
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|
| 72 |
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| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
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|
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|
| 84 |
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|
| 85 |
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|
| 86 |
+
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|
| 87 |
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},
|
| 88 |
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"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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|
| 3 |
+
size 1415829
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
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|
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| 11 |
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|
| 12 |
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|
| 13 |
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},
|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
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"Nap_Et2.mod",
|
| 34 |
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"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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},
|
| 49 |
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|
| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
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|
| 56 |
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| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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"max": 999,
|
| 61 |
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|
| 62 |
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"min": 999
|
| 63 |
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},
|
| 64 |
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"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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},
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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}
|
| 87 |
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},
|
| 88 |
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"intervention": "temporal_jitter",
|
| 89 |
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"intervention_dose": 1.0,
|
| 90 |
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"kind": "intervention",
|
| 91 |
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"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:953705bfb3c1e042ad8aba4cd5f756531dfefab8daa23223136a40e673114615
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| 3 |
+
size 1436756
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
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|
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|
|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"backend": "neuron",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
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|
| 9 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
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"dirty": false
|
| 13 |
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},
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
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"Ca_HVA.mod",
|
| 24 |
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"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
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"DetGABA.mod",
|
| 27 |
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"Ih.mod",
|
| 28 |
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"Im.mod",
|
| 29 |
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"K_Pst.mod",
|
| 30 |
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"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
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"Nap_Et2.mod",
|
| 34 |
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"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 45 |
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"teacher": "hay",
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| 46 |
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| 47 |
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|
| 48 |
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},
|
| 49 |
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|
| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
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"input_routing": {
|
| 52 |
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"all_traces_identical": true,
|
| 53 |
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"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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"min": 0
|
| 58 |
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},
|
| 59 |
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"morphology_segments": {
|
| 60 |
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"max": 999,
|
| 61 |
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"mean": 999.0,
|
| 62 |
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"min": 999
|
| 63 |
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},
|
| 64 |
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"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
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"source_sites_per_sign": {
|
| 67 |
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"max": 639,
|
| 68 |
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"mean": 639.0,
|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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"unique_source_sites_per_sign": {
|
| 73 |
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"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
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},
|
| 77 |
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"unused_source_sites_per_sign": {
|
| 78 |
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"max": 0,
|
| 79 |
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"mean": 0.0,
|
| 80 |
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"min": 0
|
| 81 |
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},
|
| 82 |
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"used_sites_per_sign": {
|
| 83 |
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|
| 84 |
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|
| 85 |
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"min": 639
|
| 86 |
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}
|
| 87 |
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},
|
| 88 |
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"intervention": "temporal_jitter",
|
| 89 |
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"intervention_dose": 1.0,
|
| 90 |
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"kind": "intervention",
|
| 91 |
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"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
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"shard_index": 848,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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+
oid sha256:ebee6f436f68ea7cb1701af7b3eacd69d384836c0e377bb586736d3ec987c6a4
|
| 3 |
+
size 1440200
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.json
ADDED
|
@@ -0,0 +1,96 @@
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|
|
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|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
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|
| 4 |
+
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|
| 5 |
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|
| 6 |
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|
| 7 |
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"generator": {
|
| 8 |
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|
| 9 |
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|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
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|
| 16 |
+
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|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
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|
| 39 |
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|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
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"max": 0,
|
| 56 |
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|
| 57 |
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|
| 58 |
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},
|
| 59 |
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|
| 60 |
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"max": 999,
|
| 61 |
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|
| 62 |
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"min": 999
|
| 63 |
+
},
|
| 64 |
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"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
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"max": 639,
|
| 68 |
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"mean": 639.0,
|
| 69 |
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"min": 639
|
| 70 |
+
},
|
| 71 |
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"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
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"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
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"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 849,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:81e07d185cdf134954416c5a34bb18ad355c34c4cf1d9a96c98aea9f9d8d4c78
|
| 3 |
+
size 1442163
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 297.20990188699943,
|
| 6 |
+
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|
| 7 |
+
"generator": {
|
| 8 |
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"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
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|
| 39 |
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"neuron_version": "9.0.2",
|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 850,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:47990541787ee1f7b5eb3db90913ab794269a49a2f11269ae4a3219f43ddc8f1
|
| 3 |
+
size 1440256
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 295.819563123001,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
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|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
+
"max": 999,
|
| 61 |
+
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|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
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|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
+
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|
| 73 |
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|
| 74 |
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|
| 75 |
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"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
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|
| 84 |
+
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|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 851,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d9e79a1c951fc01e2a8b55d10c0b4543262b2fe971296f9aac2770b275403675
|
| 3 |
+
size 1451090
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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{
|
| 2 |
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"backend": "neuron",
|
| 3 |
+
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|
| 4 |
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"duration_ms": 6000,
|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
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"data_version": "v2",
|
| 15 |
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|
| 16 |
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|
| 17 |
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"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 39 |
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"neuron_version": "9.0.2",
|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
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|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
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},
|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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},
|
| 59 |
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"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
+
},
|
| 77 |
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"unused_source_sites_per_sign": {
|
| 78 |
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"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
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"used_sites_per_sign": {
|
| 83 |
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|
| 84 |
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|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
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"shard_index": 852,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:845c8277188e0377b6245c5d5c3acdd849ec7e4192c324265c6f2cc2d9ffefdf
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| 3 |
+
size 1374196
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
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|
| 4 |
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"duration_ms": 6000,
|
| 5 |
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|
| 6 |
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|
| 7 |
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"generator": {
|
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"backend": "neuron",
|
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
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| 12 |
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|
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},
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|
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
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"DetGABA.mod",
|
| 27 |
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"Ih.mod",
|
| 28 |
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"Im.mod",
|
| 29 |
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"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
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|
| 42 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 45 |
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"teacher": "hay",
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| 46 |
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"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
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| 47 |
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|
| 48 |
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},
|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
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"input_routing": {
|
| 52 |
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"all_traces_identical": true,
|
| 53 |
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"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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| 55 |
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|
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|
| 57 |
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|
| 58 |
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},
|
| 59 |
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|
| 60 |
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"max": 999,
|
| 61 |
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|
| 62 |
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"min": 999
|
| 63 |
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},
|
| 64 |
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"n_traces": 2,
|
| 65 |
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"policy": "all_sites_by_type_arclength",
|
| 66 |
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"source_sites_per_sign": {
|
| 67 |
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"max": 639,
|
| 68 |
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"mean": 639.0,
|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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"unique_source_sites_per_sign": {
|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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},
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"unused_source_sites_per_sign": {
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| 78 |
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|
| 79 |
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|
| 80 |
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|
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|
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| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 853,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:d35f7d59711a80cb076dd16a22d09d8b6924e8e29051f52b1190f1f6c171dc22
|
| 3 |
+
size 1423594
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
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|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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"neuron_version": "9.0.2",
|
| 40 |
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"nseg_policy": "d_lambda",
|
| 41 |
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"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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|
| 47 |
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"v_init_mv": -76.0
|
| 48 |
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|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
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"max": 0,
|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
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|
| 62 |
+
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|
| 63 |
+
},
|
| 64 |
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"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
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|
| 67 |
+
"max": 639,
|
| 68 |
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"mean": 639.0,
|
| 69 |
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"min": 639
|
| 70 |
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},
|
| 71 |
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"status": "recorded",
|
| 72 |
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|
| 73 |
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"max": 639,
|
| 74 |
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|
| 75 |
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"min": 639
|
| 76 |
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},
|
| 77 |
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"unused_source_sites_per_sign": {
|
| 78 |
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|
| 79 |
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|
| 80 |
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"min": 0
|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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|
| 94 |
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|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
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|
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|
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|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:48b1dc94dba8b46913ae6607cc8ea19de48715412a570b10ec6d621e2f27b7e7
|
| 3 |
+
size 1402045
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
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|
| 4 |
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"duration_ms": 6000,
|
| 5 |
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|
| 6 |
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|
| 7 |
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"generator": {
|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
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"dirty": false
|
| 13 |
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},
|
| 14 |
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"data_version": "v2",
|
| 15 |
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|
| 16 |
+
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|
| 17 |
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|
| 18 |
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"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
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"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 45 |
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"teacher": "hay",
|
| 46 |
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|
| 47 |
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|
| 48 |
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},
|
| 49 |
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"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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|
| 55 |
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"max": 0,
|
| 56 |
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"mean": 0.0,
|
| 57 |
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"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
+
"shard_index": 855,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:21f1de77c556f7ea8a19582ed74b6cdcef903ae7ec6ee7c9b46101b65b38e0df
|
| 3 |
+
size 1390349
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
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|
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|
| 1 |
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| 11 |
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| 12 |
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|
| 13 |
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|
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
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|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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|
| 46 |
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|
| 48 |
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| 49 |
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|
| 50 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
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|
| 52 |
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"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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| 55 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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"policy": "all_sites_by_type_arclength",
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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"status": "recorded",
|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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},
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
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"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
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|
| 95 |
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|
| 96 |
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}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:085e42b320b140a92d6df4e9da83530235d16d8ce71e16524afcd96acf7f076b
|
| 3 |
+
size 1413675
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.json
ADDED
|
@@ -0,0 +1,96 @@
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
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|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
| 1 |
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{
|
| 2 |
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|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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| 10 |
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| 11 |
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| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
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"integrator": "fixed_step",
|
| 21 |
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"mechanism_files": [
|
| 22 |
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"CaDynamics_E2.mod",
|
| 23 |
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"Ca_HVA.mod",
|
| 24 |
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"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
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"Ih.mod",
|
| 28 |
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"Im.mod",
|
| 29 |
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"K_Pst.mod",
|
| 30 |
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"K_Tst.mod",
|
| 31 |
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"NaTa_t.mod",
|
| 32 |
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"NaTs2_t.mod",
|
| 33 |
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"Nap_Et2.mod",
|
| 34 |
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"SK_E2.mod",
|
| 35 |
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"SKv3_1.mod"
|
| 36 |
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],
|
| 37 |
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"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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| 38 |
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| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
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"synapse_delay_ms": 0.0,
|
| 44 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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},
|
| 49 |
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|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
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|
| 55 |
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"max": 0,
|
| 56 |
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|
| 57 |
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|
| 58 |
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},
|
| 59 |
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|
| 60 |
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"max": 999,
|
| 61 |
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|
| 62 |
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"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
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"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
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"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
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"used_sites_per_sign": {
|
| 83 |
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"max": 639,
|
| 84 |
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|
| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "temporal_jitter",
|
| 89 |
+
"intervention_dose": 1.0,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
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"samples": 2,
|
| 94 |
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"shard_index": 857,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9699c67154d06c101fa4d3bd28bb8dc017260165067741291742799fb6f3d385
|
| 3 |
+
size 1443995
|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
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|
|
|
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|
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|
|
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|
|
|
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|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
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|
|
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|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
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|
| 13 |
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| 16 |
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|
| 17 |
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},
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| 18 |
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|
| 19 |
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| 20 |
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|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
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| 44 |
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"Nap.mod",
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"SK.mod"
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| 46 |
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],
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|
| 51 |
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|
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 80 |
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|
| 81 |
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|
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
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|
| 89 |
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|
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|
| 91 |
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|
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|
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| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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},
|
| 99 |
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"intervention": "temporal_jitter",
|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_314822529",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 1414257
|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
|
|
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|
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|
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|
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|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
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|
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|
| 10 |
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|
| 11 |
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| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
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|
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 57 |
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|
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|
| 59 |
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|
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
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|
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|
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|
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|
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|
| 80 |
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|
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|
| 84 |
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|
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|
| 86 |
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|
| 87 |
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|
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|
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| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
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|
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|
| 107 |
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}
|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:032bcf7504ff4a2be820e874cd36158efe044dc052cb6fb2c6e7eb874348cd2a
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| 3 |
+
size 1391574
|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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{
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|
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|
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| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
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| 53 |
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|
| 54 |
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| 55 |
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| 62 |
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| 63 |
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"all_traces_identical": true,
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| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
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|
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|
| 77 |
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|
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|
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|
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|
| 84 |
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|
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|
| 86 |
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|
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|
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|
| 96 |
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.npz
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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size 1437824
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minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
|
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|
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|
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|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
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|
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|
|
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|
|
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|
|
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|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
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|
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|
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|
| 10 |
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|
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|
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
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|
| 53 |
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|
| 54 |
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| 55 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
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|
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|
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|
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|
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|
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|
| 107 |
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|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:8866556d1be5eff5ea1cf4e5ccddc1c6f4a61c6ef50d0be4d5c4066ac1aa0238
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| 3 |
+
size 1317433
|
minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
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|
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| 28 |
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| 29 |
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|
| 30 |
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|
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| 53 |
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|
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| 57 |
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| 59 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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| 100 |
+
"intervention_dose": 1.0,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4111,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|