assembly stringclasses 12
values | chrom stringclasses 730
values | start int64 0 65.6M | end int64 4.1k 65.6M | strand stringclasses 1
value | seq stringlengths 4.1k 4.1k |
|---|---|---|---|---|---|
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 30,109,696 | 30,113,792 | + | CAGGTAGAGTTTCTTTCCTACTTCATTTTCTTCTCTGCATATGTTTTTATATGCATCTGCAGCTAGTGAGCCTGGAGCTTTTCATTCAGGAAACACGCTACAGACAGCGCTATTTGGATTTGATGCTGAACATGGAGGTCCGGCATATCTTTAAGACCAGGGCAAAGATTATTACTTACATAAGAAGTTTCCTTGATAATATTGGTTTCTTGGAGGTTAGTATCCTCTCTAATTGGATTCAATAAATCTTTAATCAATGTCCTTACCCTCTTTATCTATTGATCTACTTTCTCATTTAACCATTTAAAAGGTAGAAACTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 31,309,824 | 31,313,920 | + | AAGTACCGCCTAGGCGCCGCCTAGACCGCTTAGACGCTAGGTGCTAGTCTACCGTCTGACTAGCGCCTACTGCAACCATGCTTTTTAAGCACAAACACTGTCTAAAATCCTTGTAATTTTACAAGTTCGTAGACCTTGCCAACACATTAGTCATGTGTTTCTATAATCCAAATACATTAAACATATAATTTTTTTGAAACATATAATTTTTTAAAAGATTTAGATTGAAATCTAATAACCAAAAACTTATAAGAGAGATACAGAACTTAAAATTTCAATTTGAGTTTTTAAAGTGGAGAGGAGGAGGAGGAGGAGGAGGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 2,940,928 | 2,945,024 | + | GTCCTTTGTTTCCTTTGTTCTCCAAAGCATTAATGGCCTAAGAATTGCGTTGATCAGTTTCAATGCTCTCTGATCACCATTCTCATAAGGTCTCAGTATTAACTTATTCCACCTAAAAGATAGCAAACATTTAAGTAATCTAGTTCAGTTAAACTTATTAGCATGTATATATACAGTTAGTAATATATAAGACATACCATGCCCAATTGCACCATGGCTCAACATGCAAGAAACACAGAAGGCTGTAAAAATCTCGCACATTATTCTGCAGCAATTAGTGAGGACATCATTAACATAAAATGGATTGCTAGAACAGTCTG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,672,064 | 35,676,160 | + | AAGTAAAATGCTTAGCAGATGCAGGATATTTTATTAATGCGTAAGATGATTTATTATACGTGTTTTATAGTAATCGTTACATCTACTCTCTCTGCTAACAAACATATGGATGCCTTGTGGCAGGTTGGATATTTCTCATGCACCACATATTGAAGAGTTCTATAGTGGCATTGTTCAAACGCATGTGAGCTTCTTGAACCTTTTCCTTGTTCGGTTCATAATTGATTCATCATTTCAAAAGTTGGTTCATTGAATTTCCGGTGTCCTAAACCTTAGTTTCTTGTTGGCTTCAGGCATCAGCTAAGAATTTGCCTCTATCG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 28,430,336 | 28,434,432 | + | AAGTTCTCAAGGACAACGACCACCACTTGGCCCACCGCTTCCGGACTAGATCCGCCTCTAACCTCAGCCGGAACGGCATGGATTTGATCTGGGCCGATTATGGGCCCCACTATGTCAAGGTCAGAAAGCTCTGCAATCTCGAACTCTTCACTCCTAAACGCCTCGACTCTCTTAGACCCATCAGAGAAGATGAAGTGAGTGCCATGGTTGAGAACATCTTCAGAGACTGCACTAAACCAGGTATGATCAATCCAGGTTTATATTAGGCACAAAGTTGATTGAATAATTTAGTCCAACCAAACTATTCTATTTTCTAACAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,680,832 | 34,684,928 | + | GACATATTGAGGTTGAAATATATAGATGTTCGCTTTTGTATGTCTTCATTTTTTACTTTCTTTTGTGTTTTTAGGTATACCAGAGTGGATGAATCCATTCCTCCATTTCTATATTGCAAAGGTGTATCGATTCATGAATTAAAGAAGCTAGCTAAAAGCAAGAGTCACACACGCGTGGTTCCATACTTGCAATTCCAAAAGGAGAATAGCTTTTTCTTGTAGGGGACCTATTGTTGCACACTTTGTCAAGCCCCCAAATGAATATGATCTTAGCCCATAAATCAATATATCCATTGCATGGTGTTATAGTATCAAAATAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 245,760 | 249,856 | + | CTGGATCTAGGCAAATATGACAGTCAAAACCTTCAATCGGATTGTTATCAGCCTCATCCATTGCAGATGATAAGGATTTCCACTTCTCCAAACAAATACCATGTTCACCAAATGGAATTTCACCAATTTCTTGCTGGATATGCTGCTCCATCTAAACGTAATAATCTTGATTGGTTTGCCCGCAATATCTGAAACAACAACCACAGAAAATCATCAAAAACTTGAGCATATTCTTAAACATGGAAAAAGCAAGACAGAGAAACTATTTACATTAAAGAAACAAAGAATTGAAGGCCCTATTTTTGCTGTTCATGTACTGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 21,684,224 | 21,688,320 | + | GGTGGGCCCCCTATCCGGTGTCTTTGTTGCTGTGAAGGATAATATTTGTACTGCGGATATGCCATCAACTGCCGGGTCGAAGATTCTGGAGAATTATCGCCCGGCTTTCGATGCCACGGCAGTGAGGAAGGTGAGACAATGCGGCGGCATTGTGATTGGGAAGACTAATTTGGATGAGTTCGGTATGGGGAGTACTACTGAAGGCTCTGCTTATCAGGTCTGGTTTTTGTCATTCCTCGTAGAATTTAAAGTTTTTGCTAGTACAAATTATTATGCACGTGCACTTTATTGGAAGGAATGAGGATTGATTCGAAGTCTGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 22,446,080 | 22,450,176 | + | TTTCCTCAAATGCATTGAAATGTGTCATTTAACTGCTGTGTGCTCAGTGAAATAGATTAGCAATTGACTGTGAAGTTAATGCAAATGAGATGATATTAGTTATTTTCTATAAAGTCTTATTTATATTATTTGTAAGGTTTGCCTTTTGCACACAGAAAAATACCAAAACATAAAAAAACCACATTAATGTATAAACTATAAACTGTTAAAGCATAGAATGTATATATATACTTGCACTGGATCTTATTATTTAATTAATGGAGATATAAGTTCATTGATAAATCATAGTCCAAGTGTTTCTCAGTTCATACCTGTTTTTA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,840,576 | 34,844,672 | + | CAGAAAGTCCCATATCAGTTCTCTATGGAGCATCTACCAAACTGCAGAACAAAAATTATCCTCCGTAATTTAAAAGGACAAAGCTGGACAGTAAATTCTATCCCGACAACTAGGGTGCAAACACTGCATACATTCTGTGGAGGATGGATGGCCTTTGTTCGAGATAATGACATCCAAATGGGAGATATCTGCATTTTTGAGTTGGTTGGGAAGTGTGAAATGCGTGTACATATTTGTGCAATTGGGAAAAAAGGTTTGGATTACCAAAATGGGAGCATTTGACATGGCTACAAACAAGAGACCTCAGGATAATTTTGTAA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 5,656,576 | 5,660,672 | + | AAATTGACTTGCGTATATGCAAATTAATAAGTAGTACACAGTAGAATAAAGGTAAAATAGTAAAAAGGAATAATTGTAATGATATTTCATGAATTAATGCCAAAGTACTACAAATGATGTTCGGTAAAAGAATAAGATATGATTTGTGTAGGAACATTTATACAAGGAAAACTTCACTAAAACAGTGAGCAGGCCGCAAGACCAAGTTAAGGTCCACGTGGTGGGCAGCGTGACTAAGTCAAAGCCTACCCATTCGGTCCCCGAAGGCCGAGGCAATAATGGCTAGTGGCCCCCGGAGCCCTTTCTCTCTACTCAAGTTG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 864,256 | 868,352 | + | GATATAAGCCATACTTGTAGAACAGAATTAAACTCAATGCTTAATTAAGAGTTAAACCCACTTTTGGACCACAAGTGTAGTGAAACTTCCTCACTGCACCCACAACTTTCAATTTGGACAAACGCAGCTCATAGACTATTAAAATTAACCAATTATAGTCCTCAGCTCCCATTGAGCCAAATGTTAAAAATGGATATAAAAGATCATGTGTGTTACATGTGCCAAAAATTTGAGGAAAAAGTAGACATTTCCATTACTCAAACACCACCAACCAATCAAAAGGAGAAGAAAAAAAACAAGGAAAATATAGAGAAGGGCAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 31,772,672 | 31,776,768 | + | ATTATGCTCAAATTAAAGCAAGCATCAATGGCACAATACACAAAATTAAAGATTCAGAAGTAGTTGAGAGTAGAGCAAAATAAGAAACATTTAGGAATTAAAACAAACACAAAACATGCTGTTAATCTCGATCAAGCCGGCCATTAAATAAGGAAACTATAGTGGCAAATTAAAATATAATGTCTGCAAATTAAACCGCAACTACCTTAAGGTAGTAAGCTTTGCGAATCTCCTCCTCGGAAGCTGAAGGGCTAACGCAAAGAATATCGTAATACTCAGTTTCTTTCACCATTGTTTGGTTTGGTGTGCTACCAAAAAGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 30,486,528 | 30,490,624 | + | ATGAAAATATTCACGATTCCGATAATTTATAGGGAGGATAAGATTTGTACCACCAAATGTGACGGAATAAATTCAAGCACATCAATAATCTGCAGAATCAAAATAACAGTTACTTAATAGTTGATATTTCAAGCCTTTATCAAAGGAAAGATGAAACAAAAAGTATTCAATCAACCAGAGGAAGATGAATGCGAACAGCTTCTGAACTTGGTTAAAGTGCAATTAGCGCATAACTCAAACAGTCAAACCATATTTATTTCAATGTGTCTTGTATATAATCTTCAAATGAAAACTCTATAAAATCCTTTTACAAATTTTCA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,074,624 | 34,078,720 | + | AACTAAAAAATTATGAATGCTATGGTGCTCATATTCTATGGGTGTATAAGAGTCTGTCATGCCGTGGCAACAGCATTCAGAACGAGGAATTATTTTATAATCATCGCACCAAAACATGATTGAGAATTGAACAGAACTTGAAAATGGAATCAGATTGTGAAGCAATGCAAGGTAACACTCTCGATTAGAGGGAGGCGAAACTTACATGATCTGCGGGAAGACGACTCCCCTAACGGGGAACTTTATAGATGGGGAGTGGCGGATGAGAGGCTATTTGAAACCCTAGCCCTAATTCTGTACATCAAATTAGGCCCATTTGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,028,992 | 35,033,088 | + | AAAAACACATACATCTAGATCCAAACACGGCACACGGATGAGAGTTTGAGAAAGATAACACAAAATCATAAAGTTAGCTTAGCTATGCACGATCAAAGTGCGATTTGCATAACCGGATCTGATGGATTATGCAATCAATCTTTAAACCAGAATTTGAACATATGGGTACTTACAATGTGGCTCGGAGATTTCCCGGTGAGCGAACAAAGAACTGGCGGAAAGCTGCCAAGATCTGATTTTGGTGCCAACTTCTTGTAAACTTAGACTAGAAACAAAAGGGAAATGGAATTGTTTCCTTTTTATTTTTCTCGTTGTTCTGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 23,601,152 | 23,605,248 | + | TTCTAGTATTATAATTTATAAATAGTGTCTTGATTTCCCTTCATCGCCGCTCCATCTTCCTCCATTCCTAGATGTTCAGCCACCCTAGCTCTTTCTGAAATCGAATTACTACGGATTCTGCATCGTTCTACTCTTTGAATCAATCTATGTTTTGTTTAGTTTCTTATGCGGTTTTCAGGTTTTTGATGAATCGATATCTCATTTGATGAGGAAAAAACTGCAACAATATGAGTCTAAGATTCAATGATTCGTTGTATTTAAGTCTCTGATGATTTTGATTTCATTAAGGTCTTTTGCATTTTTTATTTTTATTTTTAAAA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,082,816 | 34,086,912 | + | GATATTATTTCAGCTTTGGCTCATCCTTTTTATATTTCTTTCCTCTTGTTGCTGGGAATGATAGGTGAAGGAGTCCGTGGCTTATCAGGCTGTTGCATCCAACACTTCAGGTTCTACACCAAAGGATTTGTTTGAAGATGTTGTGGAAGAGTTGGAAAATCAGGTAGAAATGTTTCACTGTTCCAAACCTTTGATCTGTAAACAACCGGTTAAGTGGTTATTCATGCTAGTTTCATTTATTGTGATTACTTTATGATTTCTGGGTTGGCTTTTAGTATGCTTTTAAGGTGATGTATATATGAAAGATTGAGGAGGATCTT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,409,280 | 29,413,376 | + | AGGCATGACAAAAAGGTAATTATATTCAATTATTCACCTTTTATGATTAAATTAGAGATGCTAAAAATATTGAATTCAATATATAATCTGCAAAGATCATAAAAGCAGTGGATTGAGTTTTTTACTATCTATGATTTATTATTATGCAGAATAGTAAAGTTTCTTTGTGAGTGACAACTGTTTTCTTCTAATTAGTGATCAAATGTACCAGGCTAATGTTACTAGAAGAGAATCAAATTGCTTTCCGTTCAGATGATGGAGCAGTTGTTGATGACGTCAAAGACTACTCTCACCTAATTGCAGAGTTGATTGGGTTAGGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,749,888 | 35,753,984 | + | ATTGTGCACAAAAATATATGATTTGATGTTAAGTCTGAAGATTAAATTGACTCTTTTTTTGTGTGATTATAATCTAAATCTATTCGTAATATCTACTTAACAACATGATATATTAAATATGTTAACACCTTTGATTAAGACTCGAACCTGCGACATTTTGTTAATATAAAAATTTGAAGTTAAACTTAACTAAAGCGACAATGACTTATTAGAGACTTAGAGTGGGAGTGTCGGACCATACGAGCCCAAAGATAAGAATAAGCAGATCCATTAAGTATCAACAAATACAAAGTGGACCGCATGGCACTAGCCAGTTCAAG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 32,083,968 | 32,088,064 | + | AGTCGTCTATCGTGTTGAGATTCCAATGCGGCAGGTAATTGCAGTGAAAAAATTATGGCCAAAGAAAAGCACTGAGATTTCACAGAGGGACTTGTTTTCTGCAGAAGTTAAAGTACTGGGATCAATAAGGCATAAAAACATAGTAAGGCTTCTTGGATGCTGTAACAACGGGAAAACCAGACTGCTATTGTTTGACTACATCAGTAATGGGAGTTTAGCAGGACTTCTCCATGAGAAGAGGATATTCTTGGATTGGGATGCTAGGTATAAGATCATACTGGGAGCAGCTAAGGGTTTAGAGTATCTCCACCATGACTGTA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 28,053,504 | 28,057,600 | + | ATCAGTGCAATAGAGATAATAAACTGAAGATGCAGAGGCCACAACATGAAGATTTTACTCTTAAGGAGACCAAACCCCACCTGGGTGGAGGGAAGGTCTCAGGTGATAAGCTTGCTAGTACCTATGACCTTGTTGAGCAGATGCAATACCTCTATGTCCGGGTTGTGAAAGCCAAGGATTTGCCAGGGAAGGATGTTACAGGAAGTCTTGATCCTTATGTGGAGATTAGGCTGGGAAACTACAAGGGAACTACGCGCCACTTTGAGAAGAGGAGCAACCCTGAATGGAATCAGGTGTTTGCTTTCTCCAAGGACAGGATT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,934,208 | 35,938,304 | + | ATTTATATCATCATCCACTTCCCATAAAATAGAAATGAAGTGCACTTCAAAAGTGCATGCACTTGTGGTGTTTAACCTGAGCCTTTATTATTCCTTTCCTATACAAAATATAAATTGCTTTCTTTTATCTGCTGGTATCTCTTGGCAGTACTTCTTGACCTCCCTTGGCACAAATAGTTCAAGTGCTCGAAGCAGGTGTAGACCTTTGAGTATTGCGAGTCATGATGGTTTAGGTGGTCATTGTTTTGATCCACTGGCTGTTAAAAGAGAAGAGCCCACTTCAGAAACCTATTATGAATCCTCAGATTTGGACTTACTGC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 21,495,808 | 21,499,904 | + | TTTTAGTGTTTTCTCCTCTCTAATTTCATATAGGGCATGGGATTTGTATTCTAATTTCAAGGAAACCAAAAGTTCTTTTATCACATAGTCCCCATTATTGAGCCAGTTAGATTTATTGTTATATTTATCTCGTGAAAATAAAATGTATGGTTCTCTGATAAGTTTTTTTTTTTTTTTTTTTGGCCATTTAAATGAATATATAATTTGGAACTCCAATCATAGTTTTTGAACTTTTCTAAATAATTGAAGCATTTCTTACTAAAAGCAAATAAACATATTATGCATAAAATGCAAATTTTCTCTTCTAACCCTTGTACCCA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,521,088 | 34,525,184 | + | CATAAGGTTAATCTAGATTCTATCCAATTACAAATTCATCAATAAACACGTTATCCAATCCCCACGTTCACGCCAATTCGCAGTGGGTGTTTTTCAAACACAAAAGTTGACAGTTCTGCTTCTGATTCTTCTTCTTGTTTTTGGTCAAATAACAATAATTTTCATGGCCACAAAAGTCACATAAAACGGCAAGAAATGCTGGAATAAAGTTGGAACTTGAATTTAAACTATATATTAAAACCATATACAATAAATAAATTATATGTGCCAACCAAATAAAACCATATTATATGTGCCTGCATAAAATTCTAATGTGAAAA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 14,594,048 | 14,598,144 | + | ACCTCATCATAAGTATTTCTAACCATGGACCAGTATATGAAGTTTGGCCTGATAAACCTATAAACAAAAAAACACAGGACAGTCAATTAACCGGTGTAGTACACTAACCTCTAAAAACTGCAAAGTTAAATCACAGGCATTTTTTCATTTTCTTACAGTAAGATTGACATATAAGCAAGCCATACCTGTCAGATTTCTTTAGCAAACATGGGTCAAATGGGAAAAACGCGTCAAGCCTCTGATTCCCACCAAATGCCATTGAAACTTCTGATTCGAGTAGACCACTGCCAATGGGGGCATTGTTGTCTGGGAAACTAAAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,782,016 | 29,786,112 | + | CCTGAACTGGATGCATCTGGATTTATGCTTGCTGGAATTGGGATTAAATTTCAGTTGAATTTTGAAGTCTGCAATTTTAATAGGATGCTTTGCTGCTGCTGTTTCATATACTTGAAGAGGAATGTTCTGAAATGGAATAAAGTTTAGAAAAATAATGGTGAATGATTGTGATATATAATGATGATCAGATGGTTTGATGCATTAATGTTGCAGCAGGTTGTGAGTTTGCAGCAGGTTTGGCTGGTTTAATTGTGAGCAGAATAAGAGGATGATGGCTGAAATTTATTTGGGTCCAACTAAAGGAGAATGGCTGAATGGGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 3,518,464 | 3,522,560 | + | CCAACGAGGTTCACGCCAGCGCCCTTCTGCTGACGAAGTTCGGGTTTTTGAATCAAGATCGTCGCAGATTACTATTATAACTGTGAACTATGGTAGCTGGATTCCACGCCTACGTGTATACGAAGGTGAGGAATGACATAGTAGGCAGTAGGGGAATAAACAACCCATTAACTTCCATGCTTTTTCTAGTTTCAGATGATCTTAGAGCAGCTTTGTAAGTATGAGTAGCAGGAGAACATTCTGGTATTTTAGAATTGCCATGTTTTTTGTTTCCTAGTGTGATTATTCCCATGTACATGGCTTTTTTGGTTCAATTGTCT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 30,220,288 | 30,224,384 | + | GAATGATTTTGGGTATGGGAGAAGGAGCATTTGGGAAGGTGGGGTAGGGTTGTTTCTTGTTTCTGGCGCGGTGTTGTTGGCACTTAGCTTGGCTTGGTTGAGGGGGTTTCAATTGCGATCGAAGTTCAGGAAATATTTGGCTGTTTTTGAGTTTGACCAGGCTTCAGGCATCTGTACAGGGACACCTGTTAGGATCCGAGGGGTGAATGTTGGGAATGTTATCCGTGTTAATCCCTCGTTGAAAAATATTGAAGCCGTGGCTGAGGTGTGCTAACTACTGAACTTTGAATTATTCTATTGTTGACCTACATGTGGTGTGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 31,625,216 | 31,629,312 | + | ATCATTATTCTTTATTATTATTATTATTATTAATTTTCAGTTTTCTCTTTGTTTTTTTTTTTGAGTTACTTTTTTCAAGTGTTTTTTTTTTTTCTTTTCACATTTAAGTTTTCTTATATATATATATAATTTTTATCCTTTCCTTTCCTTCCATTCTCCAATTTTTCTTAGTCTTTTTATTACTCTTCCCCTTCCATCTTCTACTTCCTACAAGGTGAACTTTACTGATAATTGTAATGTGGATAAAATGATGAATATATCTTGAAGAATTGAACTTTATATTGTTTAATGCTTTAAGAATTTCAGGATATTATGCTGTG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 8,609,792 | 8,613,888 | + | AAGTGTACATTACTATACTTGTAACTTTATTTAAGTATTTTCGACCACATATTTATAATATTCTTCTTTCGATTTGCAGGTATAAATTATGCTGTATATCGTTTTTTAAATGTGCTTCAGTTAAAATTCGCGAATTTTAGTGCTACACTTAAAATTCGCGACATAATCGCATCTTTGTATATATGTCGCGATTTATTTGTAGCATTAAGATATTAAGTTTCAAGTACTACGGGGTTGAATTGACCAAGTCGTTTTGTAGGTCAATGTCACTCCTACTCCTGCTCCTAACCCTTCTTTGATGGGAGTGTACTTGAAACTTT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 802,816 | 806,912 | + | GTGATTCCTGGTAAGCACCAGTGCATGCAATCGTCGTGCTTTTTCCCACCTGCGGTGGATGGATGGGCGTCGGCTCGGAATTCGCTCATGTGAGTGATGTCCATTACTCTAAATTTAGTGCCTTTTAGGGCCTTGTGAAGGTGTTGATTGACGAGGCGTGTCTCCACGTTAGTTCCGTTGTTTCTGATAGAGAAAAGTTCCTCCACCTGAAAAGTGACGAGCAATTCCATGAGCAAATGTAATATCAGGATCTGATGATTATCGTTTACATTATAGATACAAGTTACCTCTTGAGGTGACAGAGGCTGAGAGCGTTTACA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 3,592,192 | 3,596,288 | + | AGGCAAGCAGATGGAAGGAAGTCTAAACAAAAGACAGAATTGTAAGTTACAAATGATATACAAGATGGGAATACTTGGCCTTTTTAGGGAGACAGAGTTCAGGAGCTATTTACCACATCGTGGTCCAAATAGACCGTGTCCAAGAATATATGCCTTTGATCCAGGGGAGGGGCAAGTGAAGTCCATAACAATGGGGCACAGCTGATCTGGAACAAACTCAAGTTGCAGTAGTGCAACATCTAGTGGTCCTTTGGAAACATGAACAACTTTCGCATTGGTCCATATCCAAGGATCCATAAAATCCAAGCGTACACGTATAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 32,231,424 | 32,235,520 | + | ATTTAATTTATTTTAATATTTAATTTAGTGTTAGCACGTACAATTTATATATTTAGAAATTACATTAAATGTACTATTGAATTTAAAAAATTAAATTTTAAAATTAAGAGAAAATAATTAACTACAGAAAGAGATAAAATGAGACAATGGTTAACAATGTGAACATTATGAGATAAAATTAGGATTTGAACATTATGGGATAAAATTAATTCTGTTAAACCAATATTTTTACAATTTGAGAAAAGTTAAACTTTGATCTTTCAATTATGATAACATTCTCAAAATTAATCCTCAATTTTCAATTGGTTTAATTGCAATTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,204,480 | 29,208,576 | + | TAATTGTAAATTCATATATTTTTCATTAAATAAATAATGTAAAATCAATAAAATATTCAAAAAGTAGCTTTTGCTGCCATAAAAATAGTGGATTGAAAGCTTACTAAACCATCATAGCAATAAAAAAGTTTAAAAATTAATTTTTTTTGTTGCCACCTCACCTAGCAAGTTATCAACTTGTTGGTTGAAAGCTTAGTAACTTACTAAACCATATTTTACTATTAGATTTTACCAAGTATTTTGTGCTCTAATAACATTACAGAAAGATTTGAAGTTTGAATCTCATCCCTCGAATCAAATCATACATTTTGAACTCAATA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 30,212,096 | 30,216,192 | + | CGGAAGTGCCAATTTTTAATCTTAATAATAAAATAACATATTGACTGAATGACTGTGTGTCTACATGTGAGATAACTTGCAAGAGACCTTACCGCCTTTCAAGAAGCAGAAACAAATAAGTTCGGTCCGCATTTGAAGGATTATCAGAACCACCAAGAATGTTTCATCCTGTGCCATTCTCATGTTGGAAGGCAACTTCTGGAGCCTACTAAAACAATTATCTTAGAAGGATCCCGATAAATTTCAATACTATTTCCAAAACACTGTTGCCAAGATGTTGTCATTCTATGGATTAGTATGATGGATGAAGAATCTTCAAG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 18,620,416 | 18,624,512 | + | ACCCACTTCATTGAGTGCTCTTCTGTCACGCCTCCTTAGAGCAATTCCATTAGTGCATTTTTAGCTATGAGATAAAACGCTGCATTGAAATGGAAATATCCAAATTAGTGCTTCTAAGACACACAAGAAGAAAACCGAACAAGTCCAACCGGAGCAGTTTTGTAATCACAGCATTTGTGTGACAAAACTGTAGTTTTATCTTTCATCTTACGCTTATAGCAGGCTATTAAGTATAAATAACAGGGTGGAGCAGCAAATCCGTTGTAGTCTAGTCGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCGATTCCC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,147,776 | 35,151,872 | + | TTTCAGGCAAACACTCGCCCCATGAACCTACCGGCAAAGGCCCACAGGGATGTAAATCAGCCTAGATTTCCCATAGCTGGCCGGAATGCCCAAGTTAGCAGGGGGATTCGATCCCTGGCCTCACGGCCAGAGTCAAGCCCGCTCTGCCACTTGAACAGCCCTTACGGGCGAAGGCATATATATATATATACACTATGTTGTTGTGTGTAACCTTTGATTGGTCATTGGTGTATATATGGTGTGTTGTTTTGTTGTGTTTCTTAGCTTAGCTTGTAGAAGCCGTCATTGATTCCGATTCCCCAGGTGTCAATTAAACTGCA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 30,199,808 | 30,203,904 | + | CAGACTGGATGGTAGTAGATACTCGGGATGCGAGGGTCTGAGTGGCAAATGCTTGAAGCTGCTTCTTGGCATCTGGAAGGAAATTGATCAAATCCTTGTTAGACAATTAACTAATTTTGACGCTTTGCAGCAAGACAGTAGAGAAGTGTGGCGTAATACTTTAGGAAAGTAAATTACATAGGCACCAGTGTTATAGGTTTCTATTTGGCAAAACTGCACAAGTTGCAGTAAGATATCCAGCATAGTTTAAAGTAAAAATCATGACCAGAGAATAGAATGATATGCTGGACTGAATTAGATGTGTGTCTGTGCATTTCTAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 167,936 | 172,032 | + | TGGTGAGAAGGTTTCTACTCTGCAGCTCAGACAAGGGGATGGAAAAGACATCAAGAAGTGAGTCAATGACTTCTACCTCAGCATTTCTTTCCCCACTTCACTATTCGCCTCAGTTTCACTAATCATTGTGGTGTTAACTTTATGCAGGGAAACGGAATTATTGAGGGAGAATCCACTGCATTACTTCCCTCCAAACTCCTTGCCTAGATGATTAATTCTGGGATTAAAAAATAAATAACTAATGCTTTTTGTAGCATGTTCTTGTTGTAATTTTACTATATTGTGGCTATCATTTACAGACCGTTTGGTTTGATTATGGG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 1,683,456 | 1,687,552 | + | CTTACAAATTTTGCATTTTGTTTGCGAGAAAACACACACACAGAGAGAGAGAGAGAGAGAGAGAGATATGGAGTGATGAGTTGTACCCGTGCAACATTAACAATGAAGCTGAAATTGTCAACAATGCTCCCAATATCGTTGTCGACTCTCTGCAACAAAGTCTTCTGCTTCTGCGCCGCCGCAGCCGCTGCCGCAGCAGTGGGGCCGCCTCCTCCCCCACCTCCGAGCCCTCCCTTATTCATTATTAGTTTGATTCCAAGCTAAGCTCACAAACACACAGACACAAGAAGCGCAATTAGGATTGAGAAAAAAAACATCGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 36,044,800 | 36,048,896 | + | TAGACCCGAGACCCGAGCACCCAAGACACCGGTCTTGCGAGCCCGTTCACTAGACCCGAGACCCGAGAACCAAGTCCTGGGACAAGAGACCCGAGACCTCGGACCCAGGACCTGAAACCCGAGCCCCGATACTCCAGACCCGGGACACCGATCCTGGGAGCCCAAATCAAAGACCCGAGACCCGAGAACCGAGACCCAGGACAAGAGACCAGGGACCTCGAACGCGGGACCTGAGACCCGAGGCCCGAGCCACCAAGACCCGAGACCCGAGCCATGATACCCCAGACCTGAGACCCGAGACTCGGGTTCTAAGAACCGGG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 30,085,120 | 30,089,216 | + | TGAACACAACCTGGTTTGCAAAGCCTTGCAGATTCCATGTATTGTCAGACTACCAAACACCTTTTCCTACCTAAATTAATCTCAAAGCTCACTTTTTTAAGGATGTTTTGCTAGTTGTTCTGAGTTCTGACGCCATTATTATGAATGCAGGTGATGATCCAGAGGACGTGAAAGCAAGGCTGAAATACTGGGCACAGGCGGTTGTGTGCACCGTCAGATTGTGCAGTCTGACGAAGAAAGATGAATGATAGAGGGTGGAGATTGAAAGCAGCTGCCATTTCTCTTCGTTTCAGGCAACTGACCTTCAAACACCATTATTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,868,032 | 29,872,128 | + | GGAAAAGTCTACTATACCCATTGATGTCAATGTCTCTCGTAATATTATATAGAAAAAGTCTACTACGTCCATTGGTACCTGCAGGGCTAAACTTAGTTGATTTGACTGATTACCTTAGAACTTTACTCCAATAACAATGTGAGGGTATGATTTGTCTGGCAATTTGGCATATACTAAGAAACCTAATATATCGAAAAAAAATCCTAAAACTTTTTGTATTCACTCTTCATTGTACCTGGTGCACCTTAGAATCTATCTCGGGTACTCAATACATAAACCTCAAAACTTTTTATATTCACTTTTGGTTGCACTTTGTGCCA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 27,713,536 | 27,717,632 | + | ATTTATTCTCTCTCCTTTTCTTTTTATTATTTCGCTCTTCAATGTGTCCGCAAAGGTAGAGCTCTCAGAGGCTCAACCAACACACACGACACATCTAAGAGCCGCAACCACAGTACTTATTTATACATGAAAAGGCCTAGTAATAGTGGTACAATTGAATATATAAACTAGCATGTGATGCATGAGGTCCCAAAAAACATTACAAATGCACTAACAATTTCAAAGATTAAAATGTAATTTATTTAGTAACAAATATACTTCTATTACTTTTCATACATTTGATACTGAATTTCCTTTTATTTAAAAATTGAATATGAACA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 1,785,856 | 1,789,952 | + | ATCTGGACTTCTGTATAAAGTCTCACTTCTAGGGTTTCTCAGGAACACAGCAGTTGCCCGACAGCTCCAAAACTATTCATTTTCTTTCGCATCGTTGCTCTGAGCTCGGAGGTAAGTTTGTTGCAGTTACATTTGATTATATTATATCTGTCTATAATTGTTGTATGAGTACAACAGATCTGGCTTTTCTAGCATAACACTGTAGGTAATCACAGTTTCAGTTATTCGTTTGATGTTTTTTTGGCTATTCCTCAAAGAAAATTGTGTTTTTTAAAGTTGTTTTCTGAATCTGTCTATTGATCTTGAAATTTGTTTTCTCA... |
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BatatasLM-MS12-Pretraining-Data
Dataset Description
A 4096 bp DNA pretraining corpus constructed from a 12-species multi-species plant genome collection.
Used By
- BatatasLM-MS12-28L_pretrain
Verified Summary Statistics
| Split | Windows | Base pairs |
|---|---|---|
| train | 385624 | 1579515904 |
| valid | 48395 | 198225920 |
| test | 48103 | 197029888 |
The values above are read from the supplied JSONL summary TSV. The supplied genome split summary TSV is also retained. No unsupported sample counts are added.
File Organization
The repository contains data/train/train.jsonl, data/valid/valid.jsonl, data/test/test.jsonl, the supplied JSONL summary TSV, and the supplied genome split summary TSV.
Project Information
- Project: BatatasLM
- Paper: BatatasLM: A Sweetpotato-Centric DNA Foundation Model
- Institution: Jiangsu Normal University
- Contact: Yiliang Wei
- Email: weiyiliang.2013@tsinghua.org.cn
- GitHub: https://github.com/Weiyiliang/BatatasLM
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