assembly stringclasses 5
values | chrom stringclasses 450
values | start int64 0 40.5M | end int64 4.1k 40.5M | strand stringclasses 1
value | seq stringlengths 4.1k 4.1k |
|---|---|---|---|---|---|
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 21,258,240 | 21,262,336 | + | TTAGCCAATTATTATCACATCATCATCTTCAATTTCTTGCCTCCCCAAACAGAGAATCCTCCTCTTCTCTTGCGCTGACAAGCACACAACTGCTACAAACTTAACCAAACACATAAAACAAAACAAAAACAAAGAGGAGAAAATTTCCAGCTAGCTAGCTATCTAGCATTGCTTATTCAGGGCACATGGGGAGGCATTCTTGCTGCTACAAACAGAAGCTGAGGAAAGGGCTTTGGTCCCCTGAGGAAGATGAGAAGCTTGTTAATCATATTGAGAAATTTGGCCATGGCTGTTGGAGCTCTGTCCCAAAATTGGCAGGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 7,798,784 | 7,802,880 | + | CCTCCATCCTCACCACCTCTGGGGGCTTTTCCTGAGCTGGAAGGACAGCATCTTCCCTCTCTTTAGCAGCTGAAAGGGTATTATCACCACTTGATATTTTGTTCTTAGTAACCGTGACCTCTCCTTCCGGTCTATACCACCAAAACAGCGAATGAAATGCCCCATTCTTTGTAGTAGGACAAATGTTTCCCATCTAAATTTATTCAATCTTCTCCTCTCTCTCCCCCAAATCTCTCTGCCCCTCTTATCACTCTCAAATCAAATCTCTCTGCCCCTCTAATCACTCTCAAATCACAACTGAGCTTAACCATCAACTATTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 25,632,768 | 25,636,864 | + | AAGCAAGCCACGCAAACGACCCGAGAACCCAATTTGAAGAAATTAGGGCTACACTTGTGAGAATGAATGCCCGAATGATAATTATCCATGTTCTTGGCTATTGCACGGCCAATAAGATTTGATTGTTGTTGAAAATGAAAATGAATTTGGCCTTGTCTTCTGCTCTTTCATTCTTTGATAGCATCAGTTGGCGAAGAAGTATTGGTCCCATTCCGGTCAGAAGTATAGCAGCAGGTATTTCTTCATTCCTGCCCTCACTGCGTTCATCTCACTCTCTCCCCGCTACTGTTTCTTCTTCTTCTTCAAATCAAAGTTACTCT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 12,476,416 | 12,480,512 | + | TTGTGTTCGATAAGCGTTCGTTTATTAAGGTAAATGAACATAAATGAACAAATTTTAAAGTTCAATTAATAAGTGAACATAGTCTGAACATTTGTAGACTTGTTTGCTAAAAGCTCATGAACAAACTCGTTTGTGTTTGTTTAATAAAATATTCATAAACACGAACAAACTTGCTTAGTGTTTGTTTAATTATGTTCACAAACATGTTCATGAACAAGCACTAGAGCATATATATATATATATAGTACTATGAGGTCAAATAGTAATCGTTGGATTAGAATATTGGATGGTGTAAGATTGATGTATTTTTTGGTTTTTTT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,577,856 | 35,581,952 | + | CACAATTTTTATTTTTACTGTTGGACCAACCAGATTGACCAATTTGTTACTTTTCCGAACAAGACGACCCACGGCATTTAAAAAAAAAAAAAGATATTATGCAATAATACATTAATACAAACCAATTCAATATAACACTATCTTATTTTATTCGTAACGAATCCGTATAATTTTTATATAGTGTAACATTTTATTGACTAGTTCATATTGTTTTAGTCGTGGATAAGCGAGCTGATAATAAGATAGATGGTGGGTAAAAAAAAGTTTGTTGCAGATAATTTAAAAGAATAAACAAATGGTTGAGTTGCCATCAGTTATTT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,238,464 | 34,242,560 | + | TTTCTTTTCTTTTTGCCTAACTCAGGTACTTTAAGGGGCCTGAACTACTCGTGGATTTGCAAGACTATGATTATTCCTTGGACATGTGGAGTCTTGGCTGCATGTTTGCAGGAATGGTATGAGATTTGGTGTATAGAAACTCTCTTTTTAACGTCCAATGCAGCGTGAAATTTAATGTTCCTTAACCTGCAGATCTTTAGGAAAGAGCCATTCTTCTATGGGCATGACAACCACGATCAACTTGTTAAAATTGCAAAGGTATTAAGTTGTTGACTTTCCATTTGGTATTACCATTTGAATTAATTGCATGGCATATTGAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 20,819,968 | 20,824,064 | + | CCACAGGGCAAGACTGTAACATCATTTCTTGACTCGAACAGGTACTGTTAATTAATATTTTCATTCAGGTTTGAAGAAGAATGGAAGAAACTGATCTGATTTAATATATAAACACAAATCACCTCGGGGGGAGATAATTTGCTACTTTTCATACCTCAAAACAAATAGGGCAGTCATGGTGCATTGCTCCTTCAATACAAGGATGGCTATTCTTCAAAATGATTGAATAGCAACATCCTGGATCATACATGCATTTCAGTGTAAGATAACATCATGTTATGTTTTATTCTATCATATCACTGCCAAAGGTGATTGAAAGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 18,280,448 | 18,284,544 | + | TTCTGCTTCTGTTACCAGTACTACAAGTACCGAGCAAGATTCCAGCAACAAATTTAGTTATAGTAGAGCTTCTCCGTCTGTGAGATGGCCTCACTTGACATTCACCGATACTCAACGCAATTCGCAACGCTTCCAGTCTCCTCCACTGACACTGACCCCAATTGAAAATGATTCCGGGTTTGAGATAGAGGTGAATGATGAGAGCCAGGAGGAGGAGGATTTGGATGGGGGCAGGACTATGACTAGGGCTAGGAGTAGGACTAAGGCTAAGAAAATGACGAAATTGGCGCTGAAGAGGGACAAAGATTGGCGAAAGAGGG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,037,184 | 35,041,280 | + | GTCTGGGAAAAATCAGCGAAAGCTCCACCATACAGTTTTTTTTTTTTTACCATTCAGAACCGACGGGGAATGAATCTAGAGCATTTTGCTTTCCATCAACGTAGAACTCAACGACTGCTTGCATTCTAGGAAGTTTATCTGGGTGGTAATTTACATGAACTATAACCGGCTTCAGCTTTTTAAGATTAGCATCTTTTCTCACAGTCTTGAACAAGACCTTGCTATTCATAAAGAGGTATATATCCATGGTTCTCCTAGAAGCATGAAGCCCGATGTAACCCGGATGTGATGGGTAGTAGAGTTCTTCGTTAAAAACTGCC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 23,314,432 | 23,318,528 | + | TGCATATAATAAACCCTATAATGATCCATAAAACACACACAAAAATTAATATAATTTTGGACATGATGACACATATCAATTACCATTTTTAAAAAAATTATGTAAAAAGTGCATTCGTAATATATACACAATTTCAATACGAATTACAATAAATTCCTACCCCACCAAATAATCCTGATTTGGAATATAGATCCGCCCACAGTCAACAAAACCAACTCCATGGTCTCATTTGACCGAATTGTAACGTATTTAATTATATAAAGCGTTTCCCCCACTGACCCACATGACATACATGATATGTTCTGAAGTTCCATCCTTTA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 6,365,184 | 6,369,280 | + | ACTCTTTCAGCAGGTGAGGGAATTGTTTCACTTTTCTCATCATACTAGTGGTTAACTGCGTATACGGTTCATAATTGTGATGACGGAAGAGATACTCAACCTATACATACATACATATGCACCCCTAACAACAATGAATGATTAGTGTTGTTGAGAGTGTACAAAATACTAAGGTGTGCTGAAAATGAATTGTCTAGAATCTAGATGCAACACTATAGTTGGAAGGGGATACATACTACTCTCCTCGCTTAACATTCTTTTTAAAATTCAATTAACAAATCTGAAATAAAGAGTTAGAAGGGAAAAAACGTATTACTCTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 4,136,960 | 4,141,056 | + | AATAGAGCTTCTCAACTCACTTGAACAAAGTACCACTTAAAAATTCTACAGCAATAAGGGGGTTTAGATTAGAGATTTCAGGCGACATTTGAATTTTGAACTACAGCTTTTTTTTTAATTAAATAAAATTTAAAAAGGTCATGTCAAAAAAAGGCCGTGGTAGAAACTACCATTATATGCAACTTTAAAAGACAAGCACTTTTCTTTATAAACTTTCAGCTTATATTGGAGTTCATTTACCATTCCGAGGACTCAACATAAAGAACACAAGATTTTTTTAAAAAAATTATTTTTGATAAGTTTTTAAAGGAGATTATTTG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,983,936 | 34,988,032 | + | ATATTTGTTAATATAAATATTACTACGTATATTTTATCTTAATTCAACCCCTCTCACTAGTCACACAAACTTTTGCCAATAAAAAAAGATGGGACAATTATTTTAGGTACTTGGTTTCCCGCCATAACCGAGGAACATGGGCCATTGATGTAGGATAGACTGTGAATCCGGCCTCAAGATGAGAAAAGTCAAAGGCGAAAGAGTCATAGGAAAAGCACACAAACGTTCCCATCATCCTCGGCTCTTACCTAAAGGTGGGTAAATTATCTCGTATCGATGTGTCATGATTTTATTTTTTTTAAATATTATATGTTCATAGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 31,944,704 | 31,948,800 | + | GTGAATTCTGAGTCAAATATTATGACTTATACTTGTATGGAATCCTCTTTTATCTGTTGCCTATATCTCCTCTCCTTTTTATTCTCTGTTAACTTCTGCATGTTCTTCCTCTCTTTTTCTTCCATTCCTAACACTACCCATCCTTTCAAATTCTCCAAGAAAACAGAGTATACTACTATACTGTTAACTCTCTTTATTTGTTCATAGTATTAATTTCAGATGCTAACTAACTACAATACCACAACTATGCTTTTTATATTCTGCAGCTTTAGAGACTCGATTTTGGCATTGACAGAGCACATAGACAAACAGGTATTCAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 27,652,096 | 27,656,192 | + | TAAGGTTGCCCCGTTTCAAGATAATTTTAGATTTGCAGACAACAGCACATGGTGAAAAAAACAGAAGATGTGAGTAATTGCACACTCTTGAGGGAAAAAGTTGCAAAGCATCAGTTTTTATATTCTCTCTCTCTTTCTCTTTCTCAGCATAGGCAAAGGGTGAGTGTAGGTAACATGGCAGGATCAGAAGACTGCATCAGTGAGAGAACAAATAAGGAATTTGACAGCCTGTCTACGTGTTTGAATAGAAGAAAGGAAAAGAAAAAGGAACCAAATGTCAAACGTGAGAGCACAGCTAGAGGGCTTCCAATTACACAAAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 32,788,480 | 32,792,576 | + | ATCCGCCCCAACCGAGTCAAAACAGCTCTCCACACCAACGTATTCACCCAACTCAACACAATGCATTCACAAAATCTGGATTTATAGACGATGAAATTCAAGGATAGAGCCAAGAAAGTGAAAAATTTTATAGGTAATAGGGTATAGGTGTTTGCATGGCATGAGCATATGTGGAAGAAGAAGAAGAAGAAAAAGGGTTTTAATAGGTAAAACGTATGGAGAAACCGAGGGGAGAAGAATATATTGAAGAAAGGGAACTGAAAGGGCTAAGAGTGACAGTGCCAGCTAAGTGTAAGCTCATACAATCCCCTGGGATTGGG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,250,176 | 35,254,272 | + | TACGCATTGTGGATTTCAATTGCGTTCCTCCAAGAGTGATCACAAAAGAAAATGCTCTAGCCGTCAAAAATGTTGTATGCATCGCCAATTGCACAAGTATGCAATGTATCATCAAGCCATGCTAATATCAATATCTTAACTCAAATGACAACAGTAGAGGAAAGTAAAAGAGGTTCTGTGAAATCCAAAGTTCGTTCTTTCATATGCATAGGTCATACATAATAAAGGAATAGTATTGATCTATCCGGAACGTGTAGAAACTCTCCGTTCTTATGTCATATAGGAAAATTCATAAGCATATCTCTTTCCATTTCCACTGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 32,829,440 | 32,833,536 | + | GTGTGGTTGCTACTGCAACTACACTATTTCCTTGGTACCCAACAAATTGGTTTCCAAAAACTCTGAGATTGAAGGAAGTATCATTGACCCTCCACAGCTGAAACATCATAAAGAACATAGAAATTAAGCATCAAAGAGAAGATTCTGAACTTGCCCATTTCTGAGCTTTAACATGTCTAAAACATACTTTGAAAGTTTCCCAGCCAGAGGCACTGGCGCGATTAGCAACCAAATTGCTTCCCCCACCATTCTCTGCAGCTACATATTTGTTGAGCATTGTAGACCTTAGTTGGACTTGAGTTCCATCCTAGAAGAAGCCA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 33,996,800 | 34,000,896 | + | TATGCCATACTACTAGTTTTATTATATTAATTAATTAATACAACAATATAAATTATTGATCAATTTTACATATATTTAATCTGAGAATAATTTTCTTCTTTATAGGAGGTTGGTAATGTAACTACTTTTGAAAACTTTCAATAACCATCCATGATCTTCATGTGTAAGGATGATTTTATATCACCATCATTGTCTTATATTCATAAGTTGTAGCTAAGACCTTGTGGTTTAATAACACTTAGTTGCACTCTCATATGGAATTGGTGGGTTCGAGCCTAAAAAAATTTCAGAAGTTGTAAGGTTTTTTCTTGAACTCTTTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 208,896 | 212,992 | + | CCGGCCGACGGTGATGGTGACGAACGACGACGGAGTGGATGCTCTTGGCTTGAGAGTTCTCTTCAGTGCCTGGTTGGCAATTTAATTTAGGGTTCTTACATGCTGGAAGCAACAAAAACTAAGAAAAATAAACAAAAGACAATTATTAATGCCATGTCATCAGCCTGGTCAGCATTCAACCGGAAGAAAGGGATGGGAACCGGCTATGCGGTGAAATTGGAGGCATTTGGGCTGTTGAGTGGGGTAATTGAACGTTTTTTAGGTCCAGTGGTCTGATTGCACTATCGCGTTACGTTCAGTGGCCAATTTGGCCCTTATTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 241,664 | 245,760 | + | AAAATGAGGTAAGCACAGTAATAATAATATATTTAGAAAAATTAATGAAACACTAATACTGTAATTTTTTTTAATGTTATCCCAATCGACTCCTATCTCCATAGCTTCATCTCCCATCGTTTCAATTCTTCAAATTGATGGTGAAAAAGTAGCAGAAGTTCGAAAGATGAATGCAATTGTGGTGCGTGGACTTACAGTATGCATATCATCCGCAAAGCTTATACGAGAGTCTCGCAACCATGCTTTCAATTCTAAGTTTTTGAGCTCCAGAACAGCTCTCAAGTGTAATTGCGTGAAGAAGGAGAAAACCCAGAATTCCT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,614,720 | 35,618,816 | + | TCTTACCATGCGAAATGTAGTGAATTATGCTCTGATATACATACTCCAAAACTCCCTCTTTCTTCATAGAAGCTAAGTTCTTAGCAGAGCAGTGTTTTTCTCATATTAAAGCTCCGGTGAAGCCTTCCAAATTGATATCAAGAAACCATAGAATGGGGCAGTGGGTGTTACTCGCCCTCTTTCTACCATGCGCCAGCATGTCCGCAGTGTGTATAGTCTACTTCTGCTCATTCTGGTACGCCATCAGGTATCGGGCCGGTGATGGTGCTAACCAGGAGGTGGTGAAAAACAGCCGGCAGAGGGGTCTATCTGCCACGCAG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 5,214,208 | 5,218,304 | + | TTTAGCATACCGTCTCCCCTTCATTTAGAAAAAGTTTGGCAATTTCAACACCAGCCTGAAATAGAGAAAGTACAGTTAGGTATGATGATAAATTCCAAAAATGTCAATGAATGCATATACGACTCTAACAAGGCCAATGGAGGAAGATGCCAGGAAGGACAGAGTCTGAGAGCTCAAAAATGAAAGAAGGCCAATGTATGCAGCATACTGGCATGAAAATAGCAACGCAGAGACAAATCACATTTCCATTACTTGTAAGCTACAGAGTAAGCTGCAGCTTTGCTCTTTGTTTCTCTTATTATTATTATTATTGGTTTCTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 31,301,632 | 31,305,728 | + | GTCATACAAACGTATGTAGTTGCGTGTTATGAGGTATTTGGTTATTATATAGTCTATTTAGGTTAACCGGGAAACAAAAACATGTGCAATAATTGCTGACTGTGAATTGAAACTTTATGTGTTTTGTTCTTATTATCAGAAACAAAAGAAAGGAAAAGAAAAACCTTTTTGGATGTGAACAAAGATTTTGGCAAAAGATTAATGTGTATGCTATAAACATAATAGGGAAATTTGTGGTTTTTGACTTTTTCTTCCCTATATTTATAGCAAATAGTGATGGTATACCTTCCATTATTATTATCATAAAGGGACGGTTTTGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 27,308,032 | 27,312,128 | + | ATTCATCTTCCACACCATCTTCCTCAGCTTCACCAGTAGATGTATCAACCTAGTCATAAACCAGCCAAACAACAGGGACGTAATTACCAACTATAAGTTACAGGATCAAAGAAACATGGACAAAGCACGAATTCAACAAACAAAGCACAGTCAATTCACAGCTAGAATGAACATTTAAGTGGGTGGTTTGATGCTTCATACAACAGCTTACAGACTTATTTGGGGTGCTGACTAACTGAACATCAACCATGTAGAGCTTATGCCTACAACCTTTTCCAGTCAAGACACAAAGTATGTTTTGAGATTTTTTTTTTTTTAGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 3,272,704 | 3,276,800 | + | ATCTATGACATTGAACTGGGTGACATTTTGTATTGAAACGAGCAACAAAGCTATTATTCTCAAAGTTCACAAGGAGTATGTTCCCATTTGTATGGAGGTAAGTTACAATATTTTTTGATATGTAGCTGATGTTGTTTTCTTGATGATTTTAGTAACTATTTAGCATCCTTTGTGACTTATATAAGTTCAGGTGTTTTTTTTATTTATTTTTATAATAGCTTGTCAAGTTTAATTCCTTGTATTTATATTTACTAGTGTCTCCATTAGAGAATGTCTTATCAATGATTATTTTTAAAAGATGCATTCCACCTTTCTTGCAA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 24,223,744 | 24,227,840 | + | AGGGAAAAGAAATGTTTCCCAGATAAGGTTTCTGTTACTTGAAGCTTTTAAGTTATAAATTCAGTAACTTGTCCAGTTGCATGCAAAAAGGACCCTATGCCTCAACCTGCATAAAGATTTACAACTTGCTTTTGCATTTTGCCAACTTAGCAAATTTAAGCATTTGTGTGTTTGTGATGTTTCCCTCATGTATTCAGTGCATATTTAGTAGAAGTTATCTTTGCACTTTTCTGATATCTAATTGTTTCCAGACCATTTACATGCAATTTTAGGGGGAAAAGGGAGGACAAGTTCTTGTTGTTCCTGAACTAGCTGACTTC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,868,032 | 29,872,128 | + | GGAAAAGTCTACTATACCCATTGATGTCAATGTCTCTCGTAATATTATATAGAAAAAGTCTACTACGTCCATTGGTACCTGCAGGGCTAAACTTAGTTGATTTGACTGATTACCTTAGAACTTTACTCCAATAACAATGTGAGGGTATGATTTGTCTGGCAATTTGGCATATACTAAGAAACCTAATATATCGAAAAAAAATCCTAAAACTTTTTGTATTCACTCTTCATTGTACCTGGTGCACCTTAGAATCTATCTCGGGTACTCAATACATAAACCTCAAAACTTTTTATATTCACTTTTGGTTGCACTTTGTGCCA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,876,224 | 29,880,320 | + | CCCGCTCACCCAAGTCAAAGAAGTTGCGATACCTTTCCAGCTCATCTTGCACTTGTCTCAGTTCTATTTTTGTGCTTAAAAGTTCAGGATGATTTTCATATTTTTCTTTCAGAATCTGAAACCAAATGAAACAATGCATGATGAGAGGAAAGGAATCCACATGACTAAAGTAAAAGAGCCAAAGGCATACCTTATGCTCATGAGTAAGTGACAACATCTCATCCTCCATAAAATCCTCAGTTGTTAGGACCCCATCCATCAAGCTCTCAAGGCGTGCAATTTTATCTTCTCGTGTTTGACTGATTACAGCATTGCATTCT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,433,856 | 29,437,952 | + | GTGGAAATGGAGCTGATTGTTCTGCTATCCTTCAAAATGGTGTTTGTTATAACCCCAACACTGTGAAAGATCACTGCAGCTATGCTGTCAATAGCTATTATCAGAAGAAGGCTTCATCTGGAGCAACCTGTGAATTTTCTGGCACTGCAACTCTCACTGCTAATCTACCCTGTAAGTAAAACACTTTTATCTTTCACCCAATATTTTTACCCTCTCTGCCCTAAACTTTTTCCTTTTATTGATTGGCATAAACTTATTAATGTTTTTCCCTTTTTGTTTTTTTTTTTTCTTGTTTTTGCTGTGTGCAGCTCAACCTTCTG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 18,563,072 | 18,567,168 | + | TACTCCGTACATTTTTATTATAATTATTATTAATCTTTATAACTATTATAATTTTATTTTAATATAAATAATAATTATTTTCATTATTATAATAATTAATATTTTATTAAAAAATAACTCTGTAATTCATGGTGTTTTTTCACTTTGTAAACACCTACTTACATTTGAGTATAAATGTATTTTTCACTTTGTAAACAATAGTGAAGAAATGTAAAATATTTTTAAATAGAAGGTTTGATATTTAGAAATAAGTAAAGCATAGTACAAAAATCATTAAAAATTGCAATATCAAAATCCAAAAATAGGTTCCAAAATTTGAA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,872,768 | 35,876,864 | + | CATAATAATAATGATTTGACAGAATATAATAAATCAATAAAGATTATTATGATGAATAAAAGCCACTTTATAGTTACATCTTTTTCATTCATTTATGTCCACACAAATATACAAGCTACACGTAAACGTACCTTAACCAGAAGCCAGCGGAAGCGAGACTTTACACAACCAACCCAGTTACCTAGTCCATCTTTGTCAGAAGCTGAAAGGTATATTTTGAGTAGTCGTCCGTACTTCTTTGAATAAGGAAAAGGTTCAAAGAGGATAGTCCAATCAAAAGCTGGACTCAACATGTCCTGTAACAAGAACCATTGTGCACA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 33,685,504 | 33,689,600 | + | AACAACTTCATTTGGTAGTAAGAAAGTCCAGCTGACTGAAATATCAGTTGATGGACCATATTCGAGCACCATGGATTCCTAATGTAATTGGGAGTGCTCGGCTTTCCTCTGGAAAAGAAGTGACCCTAACAAAACAGCAATTCCTGTTATTGCGATGGTAAACAGTAGGCGCCTCTTTGAAAACTCGTTTGGATGCCTTCTTGGAATATCAGGTTCTCTTTCTACTGCCCTTGTGTTCCTGAAGAATTTCAAAACAATACCAAGAAGAAGGAAAGGGGGGACGAAGTGAATACTAGTGTAAAAGAAATGAAGCATTGGTG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 27,848,704 | 27,852,800 | + | ACGCATGTCATGACAATTGAAGAAATTGTGATGGTTAAAAATTAAATTAGACAAAGCAAAAGCTATAAGATTTTAGTATGCTTCTATATAAATATTTATTTTATTTTTTCCAATATGTGAAATTGGTGCTTTAGGCCATAGGAAAGAGGGAAGGGGGTATGTCAAAAGAAGGAACATCTTTTAACACAAAATCTCCATAAAGCATACCTTCAAGAATTCAGCAATCTTTGATGCTAATTGCTGCTGCTCATAGGTACTCTGGTTTCCATGCCAAGTGAACATTGAAGAGCCAGATTGAGCAAGAAAACACTCATTGGAGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,209,792 | 34,213,888 | + | TTACCTTTTTTCCTATTAAGAACTCAATTTGTAATTGAAAGCTTTACATACTATGGGTGGGGGTGGGGTGGGGAGTGAATTTCGTGGGTACCTGGATTGCTGCCACCTTGGACAAGAGATCTTTACATTGATCAAGTGAAGCATGCTCTTGGGCAGCTGTATTAGAAAGCTCATACACCAACGAATTTGCCTGTTCAACCTGTTTACACATGATTACCATGAATCAGACTTGTAATCTAGCTTAGGAAGAGATACCACCAGCAAGGTATAGCTTGGCTTAAGCTTGCAAAAGTATAAAAGTTTGAACACTTACTTTTCTA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 34,447,360 | 34,451,456 | + | GGTGTAAACATGAATTTTTAAACAAATTTTCTGATCTTTGAAATTTGGTGGTGCTCAGTGATTTTGAGATAGAATGTGCAAAACAGCTTTGCTTTTATTTTTCCCCTAAAGCTTTGATGGTTTTTGAATACTGCCAATTCTTGGATGAAATGGAAAAGACTCTTCCTTTACTTCTACCATGTATCTGTTTGTGTCTTCTGTTTTTGTTTATTTTCAAGCTTCTATTTCACCTAAATCTCTTTTTCTTTATTGCTGCTTAGTGTTAATCATTTTTGTATTGAATATTGATTGAAGTGTTTGTATAGGAGTGAATTATAAGA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,979,264 | 35,983,360 | + | TATCAACATGAGACAGCTGTTGCAATGATTCAGCATACAACTGTACATAACGCCGGCGCAAATTACACAGATACTGAATTTGATCCCAAGAGAATCTATAACTGTAAAAGGTGCAAATAAGCAATTAGTTGACAAAGAAAAGTTGGTATGACATACAAAGAAATAAATAAATAAACAACCTCATCTAAGGCATAATCTTACGCATATAACAGAACTCAGAAATAGAATTTTATATAAACAATAGGGAAATAATGCCACATGCATTTGATTTCTCCCATTTTAGCAAATGTTCAATCACTAAATTCCAATGCCTTACCACA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 18,300,928 | 18,305,024 | + | ATTGGAGGTGTGGACACGTGTTCATGGTGGTTGAGTCTATCTTGTATTGTATATTGCTTCCCTCTATTTTAATATTTTTTAGTTTAGATCTTAGAATGCATCTCAATTCAATGGTTAACATCTTTTACTTTGAAGTCAATCTTGTCTTTTTTCTTCATTTTATTGGAGGTATGGACACGTGTTCATGGTGGTTGAGTCTATGTTGTACTGTATATTGTTTCCCTCTATTACATTACAATGGCATCATTTCTCATGCTTATGTTTATATGAATTTGCAGTTTCATTGTCAGAACAGCAATGAGTACAATGACCTTGCAACT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 31,150,080 | 31,154,176 | + | TGGAAACAAGCAAACACACAATGCATGAATATGAGCAAAATACCTTGTGAAGCTGTTGGACAACCTCTTGCTGATCATTGTCACCAGAAATTTGGAACCATTCATCAAAAGTTTCTGCCGAGCTAAAGATCTCTGGAAGCAAGAAATTAAGGAGAGCCCAAAGTTCATGAAGATTATTCTGCATAAATGAATAGGTGATAATAGGTTAGTAAACAAATAAGTTTAAGTACATTTGTTTTCCTAACTGTTGGTTCATGTTCTCACATTGATGCATAGAACAAAACAAAAATAATGAACATCCATCTTGTTCAAGAAACATC... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 25,010,176 | 25,014,272 | + | TTGATCACTAAATGCATGTAAAAGCACAAGTCACACATCCCTTCTGTGAAATCATAGGTAGAATTAAATTTCAATAGAATATGTGAAGTTGTGAACTCCATTGGATGCAAAGGATTATTAATAAACCTACTAAAAAGCAGAGGAAGATCATATGCACAACCACTGACAACTGTGAAATCATCAAGAAATAGCCCTGACACTTTACGGATACTGACTCCAGGAATCAGAAGAAACAGGATCATACCTAAAAGAAAGTGACCAAAAGTATTTTTCATGCATGATCTTATAGTTACCTACTCAGTCGTGATTTTGGGAAAATG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 29,450,240 | 29,454,336 | + | TGGCTTCTGCGGGTTTTCTGGTTCTGATGAGTCCTTCTCTTGCACTTGCCGGAATGGAGTTAACACCACAGTCAATTGTTTTGGCAGAGGTTTGTGTCATACATACCAACACAAGAAAAGAAAAGAAAAAATTTTCTCCGTTTCTAATTAGTGATGTTTTTTTGGATCTGATGTGATCAGGATATGCTTGGAATGGGACATGGAGACACAAAATTCAAACAAAAGTGTACATTGGAGGTAAATGCTCCTTGACTTTTCAAACAAAAAGTTCACTGTGTTTGACAACATTTACTGGCATATCATGTGATTTGTATTGCTGT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 26,112,000 | 26,116,096 | + | ATCACAGTACTCTTTGTGTTGTAAATACTGCTGCTGCCTATTAAAAAAAAAAAAAAACTGTAATTAGGTATAGGAAAAGGAACTTGTAATGCGTCCACTACAATGAGAATGCCAACAACAGTAAACCTCAGCAAATAAGAGCATATTCGCCTACACATTGGAAGGAAAATTAGAAAGATGAGACTTAACGACACAAGCCCATGCAAGATCCACAACAAAAGCCCAAAATATGTTTAACCTACCCAGACTCAAAGCCTCTAAATGAAGGTTGAAAACCTTGACAAAAACACAAGACCTGCCAAGGGTGGTGATATTGTAAT... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 14,327,808 | 14,331,904 | + | ATCTAATCTTCTTCTTCTTCAGCACCTCAAATTACCCATACCTTTTACTTACTAGCTGTCATGAAAATGCTCGCTTCCATGCATTCCATTGCTCGCTCCTTCACTAGCTGGGTACTGAAGAATTGTCTCCCATGGGGTGTATTGGTAATGAAATTTCTTCCTTCTGCATTGCAGCATTGTTGTCTTTGTTGTACTCGACGACCGTGTCAACTCCCTTCCCCAAAGTGGCACTTTCAATCTCGGTTTCCACCCCGGGAAGTGCTGCCTCCAGATCCACACCCTTGTCCTCGACTTTATGATCTTCCAAGCTGCTCCTCTCG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 35,885,056 | 35,889,152 | + | AACAACGCACAAACTTTGAAAAGATTTCATTATAAAGAATGCAGGTCCAAATCCTTCATTGCTTTGAGTGCTTTATGTTGCTTGCTTTGGGCCACCTACTATTGGAAAGAATTACTCATAAGGTATGGTATATTAATCTGTTATCTGCTGTGCGGTTATTTTTCCTTTTTGTTTGAATTAGAATCCATTTTAACTTCATCCGTCATTGAATTTTTTAGTGAGGAGGGAGAATCTAGAGATTGAAGGGGATGATTTGCTAAAACTTAAAAGGTTGTTGCCCTCTGTTGTGCTGATTGAGCAAATACAGTAACAACTAGTTG... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 33,169,408 | 33,173,504 | + | ACCTAAGAGTATTAATACAACCAACCATAATTTAAGGAAAACGAAAGGGGACAAAAACAAAACATAGCAACCTCAAACACCCTCTCTCTACAGTCCTGATGTGCTTCCGATTCTCCTCTTTCTCAAGCGCTCCGCAATGATGAATGCGAGCTCGAGGGACTGAGAGGCGTTCAGCCTAGGGTCACAGTGGGTGTGGTAGCGGGAACCCAGATCGTCAAAAGTCACAGTTCGTGATCCACCAATGCACTCTGTCACGTTTTGGCCCGTCATCTCTAAGTGCACACCTCCTGGGTTGCTTCCTTCTTGCTCATGCACATCAA... |
Ipomoea_batatas_Beauregard_v4 | BrgdChr01A | 36,093,952 | 36,098,048 | + | CGGTCCTAGGAGCCCGAACCAGAGACCCGAGAACCGAGGCCCATGACCAGAGAACTGAGACCCCGGATCCAGATCCTGAGAACCGAGACCCGATCCAACAAGACCCGAGACTGGAGCCCCAATACCCCACACCCGTGACCCAAGAACCGGTACCCGAGACCCGAGAACCAGGATCCTAAACCCGAGACACCAATCCTAGGAGCCCGAGACCCGAGACAAGAGACCTGAGACCCCGGATTAGGGACCTAAGACCCGAGACCAGAGGCCCGAGACCCCGGACCAGGGACCTAAGACACGAGACCCGAGCCACCAAGACCCGA... |
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BatatasLM-SP5-Pretraining-Data
Dataset Description
A 4096 bp DNA pretraining corpus constructed from five sweetpotato genomes or accessions.
Used By
- BatatasLM-SP5-20L_pretrain
- BatatasLM-SP5-28L_pretrain
Verified Summary Statistics
| Split | Windows | Base pairs |
|---|---|---|
| train | 340479 | 1394601984 |
| valid | 42077 | 172347392 |
| test | 42524 | 174178304 |
The values above are read from the supplied JSONL summary TSV. No unsupported sample counts are added.
File Organization
The repository contains data/train/train.jsonl, data/valid/valid.jsonl, data/test/test.jsonl, and the supplied JSONL summary TSV.
Project Information
- Project: BatatasLM
- Paper: BatatasLM: A Sweetpotato-Centric DNA Foundation Model
- Institution: Jiangsu Normal University
- Contact: Yiliang Wei
- Email: weiyiliang.2013@tsinghua.org.cn
- GitHub: https://github.com/Weiyiliang/BatatasLM
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