Batatas_GUE

Dataset Description

Batatas_GUE is a benchmark collection for DNA sequence functional classification in sweetpotato-related genomic tasks. Each task directory retains the supplied complete CSV and train/val/test CSV splits.

Tasks

Task	Description
H3K27me3	Histone modification-associated DNA sequence classification.
H3K4me1	Histone modification-associated DNA sequence classification.
H3K4me3	Histone modification-associated DNA sequence classification.
IbBBX24_TFBS	DNA sequence classification for IbBBX24 transcription factor binding sites.
IbNFYA3_TFBS	DNA sequence classification for IbNFYA3 transcription factor binding sites.
lncRNA	DNA sequence classification associated with long non-coding RNA regions.
prom_1k	Promoter sequence classification using 1 kb sequence windows.
prom_300	Promoter sequence classification using 300 bp sequence windows.
splice_acceptor	Splice acceptor site-associated sequence classification.
splice_all	Combined splice site sequence classification.
splice_donor	Splice donor site-associated sequence classification.

Dataset Structure

The 11 task directories contain the supplied complete CSV plus train, validation, and test CSV files. File names and task directory names are preserved.

Available Subsets

H3K27me3, H3K4me1, H3K4me3, IbBBX24_TFBS, IbNFYA3_TFBS, lncRNA, prom_1k, prom_300, splice_acceptor, splice_all, and splice_donor.

File Organization

The top-level directory is organized as one folder per task. No test predictions or test metrics are part of this dataset card.

Intended Use

Research and benchmarking of DNA sequence functional classification. Verify task-specific labels and data provenance before drawing biological conclusions.

Relationship to BatatasLM

Batatas_GUE is the downstream benchmark collection used with BatatasLM models and is distributed separately from the BatatasLM pretraining dataset and model repositories.

Citation

Please cite the project information below. Publication status and bibliographic identifiers are not asserted here.

Project Information

• Project: BatatasLM
• Paper: BatatasLM: A Sweetpotato-Centric DNA Foundation Model
• GitHub: https://github.com/Weiyiliang/BatatasLM
• Institution: Jiangsu Normal University

Contact

Yiliang Wei - weiyiliang.2013@tsinghua.org.cn