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Card: metadata v2.2 (tag metadata-v2.2-20261106, corrections from human review)

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  1. README.md +5 -5
README.md CHANGED
@@ -248,15 +248,15 @@ catalog has no per-sample license column. See the
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  reuse terms and citation, and cite the original studies with the data you use (`sda-db cite` writes BibTeX for
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  a selection).
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- ## Curated sample metadata v2 (2026-11-05)
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  `metadata/v2/` adds a curated table on top of the same 12,163 samples. No data file changed: the paper release is
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- still tag `v1.0.0-20261025`.
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  - `samples_metadata_v2.parquet` / `.csv` has one row per sample:
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  - organ (43 sites);
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- - UBERON tissue term (11,606 samples);
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- - MONDO disease terms (6,477);
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  - sample kind, disease status (normal / disease / perturbation / not stated), life stage and sex;
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  - NCBI taxonomy, and the species implied by the gene IDs;
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  - corrected platform family and assay name.
@@ -267,7 +267,7 @@ still tag `v1.0.0-20261025`.
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  sample's GEO record, so it could not invent identifiers. Fixed rules handle unambiguous ages.
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  - **Quality, estimated on 300 random samples.** An independent model judged each label and every "wrong" verdict
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  was read by hand. Estimated wrong rates: organ 0.3%, tissue term 0.7%, sample kind 0.7%, life stage 1.7%,
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- disease 3.0%. Labels judged correct were not re-read, so these are estimates.
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  - **Known limit.** A study's disease sometimes lands on a control whose own record does not say it is a control
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  (about 1.5% of samples). Use `annotation_low_confidence`, `metadata_flags` and the raw fields when this matters.
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  - Full description: `metadata/v2/README.md`.
 
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  reuse terms and citation, and cite the original studies with the data you use (`sda-db cite` writes BibTeX for
249
  a selection).
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+ ## Curated sample metadata v2 (version 2.2, 2026-11-06)
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  `metadata/v2/` adds a curated table on top of the same 12,163 samples. No data file changed: the paper release is
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+ still tag `v1.0.0-20261025`; the current metadata is tag `metadata-v2.2-20261106`.
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  - `samples_metadata_v2.parquet` / `.csv` has one row per sample:
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  - organ (43 sites);
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+ - UBERON tissue term (11,605 samples);
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+ - MONDO disease terms (6,479);
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  - sample kind, disease status (normal / disease / perturbation / not stated), life stage and sex;
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  - NCBI taxonomy, and the species implied by the gene IDs;
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  - corrected platform family and assay name.
 
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  sample's GEO record, so it could not invent identifiers. Fixed rules handle unambiguous ages.
268
  - **Quality, estimated on 300 random samples.** An independent model judged each label and every "wrong" verdict
269
  was read by hand. Estimated wrong rates: organ 0.3%, tissue term 0.7%, sample kind 0.7%, life stage 1.7%,
270
+ disease 3.0%. Labels judged correct were not re-read, so these are estimates. A human reader then reviewed 200 samples, and the errors found were corrected in version 2.2.
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  - **Known limit.** A study's disease sometimes lands on a control whose own record does not say it is a control
272
  (about 1.5% of samples). Use `annotation_low_confidence`, `metadata_flags` and the raw fields when this matters.
273
  - Full description: `metadata/v2/README.md`.