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def trial_ls(args): '''List trial''' nni_config = Config(get_config_filename(args)) rest_port = nni_config.get_config('restServerPort') rest_pid = nni_config.get_config('restServerPid') if not detect_process(rest_pid): print_error('Experiment is not running...') return running, r...
def trial_kill(args): '''List trial''' nni_config = Config(get_config_filename(args)) rest_port = nni_config.get_config('restServerPort') rest_pid = nni_config.get_config('restServerPid') if not detect_process(rest_pid): print_error('Experiment is not running...') return running,...
def list_experiment(args): '''Get experiment information''' nni_config = Config(get_config_filename(args)) rest_port = nni_config.get_config('restServerPort') rest_pid = nni_config.get_config('restServerPid') if not detect_process(rest_pid): print_error('Experiment is not running...') ...
def experiment_status(args): '''Show the status of experiment''' nni_config = Config(get_config_filename(args)) rest_port = nni_config.get_config('restServerPort') result, response = check_rest_server_quick(rest_port) if not result: print_normal('Restful server is not running...') else: ...
def log_internal(args, filetype): '''internal function to call get_log_content''' file_name = get_config_filename(args) if filetype == 'stdout': file_full_path = os.path.join(NNICTL_HOME_DIR, file_name, 'stdout') else: file_full_path = os.path.join(NNICTL_HOME_DIR, file_name, 'stderr') ...
def log_trial(args): ''''get trial log path''' trial_id_path_dict = {} nni_config = Config(get_config_filename(args)) rest_port = nni_config.get_config('restServerPort') rest_pid = nni_config.get_config('restServerPid') if not detect_process(rest_pid): print_error('Experiment is not runn...
def webui_url(args): '''show the url of web ui''' nni_config = Config(get_config_filename(args)) print_normal('{0} {1}'.format('Web UI url:', ' '.join(nni_config.get_config('webuiUrl'))))
def experiment_list(args): '''get the information of all experiments''' experiment_config = Experiments() experiment_dict = experiment_config.get_all_experiments() if not experiment_dict: print('There is no experiment running...') exit(1) update_experiment() experiment_id_list = ...
def get_time_interval(time1, time2): '''get the interval of two times''' try: #convert time to timestamp time1 = time.mktime(time.strptime(time1, '%Y/%m/%d %H:%M:%S')) time2 = time.mktime(time.strptime(time2, '%Y/%m/%d %H:%M:%S')) seconds = (datetime.datetime.fromtimestamp(time2)...
def show_experiment_info(): '''show experiment information in monitor''' experiment_config = Experiments() experiment_dict = experiment_config.get_all_experiments() if not experiment_dict: print('There is no experiment running...') exit(1) update_experiment() experiment_id_list =...
def monitor_experiment(args): '''monitor the experiment''' if args.time <= 0: print_error('please input a positive integer as time interval, the unit is second.') exit(1) while True: try: os.system('clear') update_experiment() show_experiment_info(...
def parse_trial_data(content): """output: List[Dict]""" trial_records = [] for trial_data in content: for phase_i in range(len(trial_data['hyperParameters'])): hparam = json.loads(trial_data['hyperParameters'][phase_i])['parameters'] hparam['id'] = trial_data['id'] ...
def export_trials_data(args): """export experiment metadata to csv """ nni_config = Config(get_config_filename(args)) rest_port = nni_config.get_config('restServerPort') rest_pid = nni_config.get_config('restServerPid') if not detect_process(rest_pid): print_error('Experiment is not runn...
def copy_remote_directory_to_local(sftp, remote_path, local_path): '''copy remote directory to local machine''' try: os.makedirs(local_path, exist_ok=True) files = sftp.listdir(remote_path) for file in files: remote_full_path = os.path.join(remote_path, file) loca...
def create_ssh_sftp_client(host_ip, port, username, password): '''create ssh client''' try: check_environment() import paramiko conn = paramiko.Transport(host_ip, port) conn.connect(username=username, password=password) sftp = paramiko.SFTPClient.from_transport(conn) ...
def json2space(x, oldy=None, name=NodeType.Root.value): """Change search space from json format to hyperopt format """ y = list() if isinstance(x, dict): if NodeType.Type.value in x.keys(): _type = x[NodeType.Type.value] name = name + '-' + _type if _type == '...
def json2paramater(x, is_rand, random_state, oldy=None, Rand=False, name=NodeType.Root.value): """Json to pramaters. """ if isinstance(x, dict): if NodeType.Type.value in x.keys(): _type = x[NodeType.Type.value] _value = x[NodeType.Value.value] name = name + '-' +...
def _split_index(params): """Delete index information from params Parameters ---------- params : dict Returns ------- result : dict """ result = {} for key in params: if isinstance(params[key], dict): value = params[key]['_value'] else: v...
def mutation(self, config=None, info=None, save_dir=None): """ Parameters ---------- config : str info : str save_dir : str """ self.result = None self.config = config self.restore_dir = self.save_dir self.save_dir = save_dir ...
def update_search_space(self, search_space): """Update search space. Search_space contains the information that user pre-defined. Parameters ---------- search_space : dict """ self.searchspace_json = search_space self.space = json2space(self.searchspace_...
def generate_parameters(self, parameter_id): """Returns a dict of trial (hyper-)parameters, as a serializable object. Parameters ---------- parameter_id : int Returns ------- config : dict """ if not self.population: raise Runtime...
def receive_trial_result(self, parameter_id, parameters, value): '''Record the result from a trial Parameters ---------- parameters: dict value : dict/float if value is dict, it should have "default" key. value is final metrics of the trial. ''' ...
def get_json_content(file_path): """Load json file content Parameters ---------- file_path: path to the file Raises ------ TypeError Error with the file path """ try: with open(file_path, 'r') as file: return json.load(file) except Ty...
def generate_pcs(nni_search_space_content): """Generate the Parameter Configuration Space (PCS) which defines the legal ranges of the parameters to be optimized and their default values. Generally, the format is: # parameter_name categorical {value_1, ..., value_N} [default value] # parameter_...
def generate_scenario(ss_content): """Generate the scenario. The scenario-object (smac.scenario.scenario.Scenario) is used to configure SMAC and can be constructed either by providing an actual scenario-object, or by specifing the options in a scenario file. Reference: https://automl.github.io/SMAC3/s...
def load_data(train_path='./data/regression.train', test_path='./data/regression.test'): ''' Load or create dataset ''' print('Load data...') df_train = pd.read_csv(train_path, header=None, sep='\t') df_test = pd.read_csv(test_path, header=None, sep='\t') num = len(df_train) split_num = ...
def layer_distance(a, b): """The distance between two layers.""" # pylint: disable=unidiomatic-typecheck if type(a) != type(b): return 1.0 if is_layer(a, "Conv"): att_diff = [ (a.filters, b.filters), (a.kernel_size, b.kernel_size), (a.stride, b.stride)...
def attribute_difference(att_diff): ''' The attribute distance. ''' ret = 0 for a_value, b_value in att_diff: if max(a_value, b_value) == 0: ret += 0 else: ret += abs(a_value - b_value) * 1.0 / max(a_value, b_value) return ret * 1.0 / len(att_diff)
def layers_distance(list_a, list_b): """The distance between the layers of two neural networks.""" len_a = len(list_a) len_b = len(list_b) f = np.zeros((len_a + 1, len_b + 1)) f[-1][-1] = 0 for i in range(-1, len_a): f[i][-1] = i + 1 for j in range(-1, len_b): f[-1][j] = j + ...
def skip_connection_distance(a, b): """The distance between two skip-connections.""" if a[2] != b[2]: return 1.0 len_a = abs(a[1] - a[0]) len_b = abs(b[1] - b[0]) return (abs(a[0] - b[0]) + abs(len_a - len_b)) / (max(a[0], b[0]) + max(len_a, len_b))
def skip_connections_distance(list_a, list_b): """The distance between the skip-connections of two neural networks.""" distance_matrix = np.zeros((len(list_a), len(list_b))) for i, a in enumerate(list_a): for j, b in enumerate(list_b): distance_matrix[i][j] = skip_connection_distance(a, ...
def edit_distance(x, y): """The distance between two neural networks. Args: x: An instance of NetworkDescriptor. y: An instance of NetworkDescriptor Returns: The edit-distance between x and y. """ ret = layers_distance(x.layers, y.layers) ret += Constant.KERNEL_LAMBDA * ...
def edit_distance_matrix(train_x, train_y=None): """Calculate the edit distance. Args: train_x: A list of neural architectures. train_y: A list of neural architectures. Returns: An edit-distance matrix. """ if train_y is None: ret = np.zeros((train_x.shape[0], train_x...
def vector_distance(a, b): """The Euclidean distance between two vectors.""" a = np.array(a) b = np.array(b) return np.linalg.norm(a - b)
def bourgain_embedding_matrix(distance_matrix): """Use Bourgain algorithm to embed the neural architectures based on their edit-distance. Args: distance_matrix: A matrix of edit-distances. Returns: A matrix of distances after embedding. """ distance_matrix = np.array(distance_matrix)...
def contain(descriptors, target_descriptor): """Check if the target descriptor is in the descriptors.""" for descriptor in descriptors: if edit_distance(descriptor, target_descriptor) < 1e-5: return True return False
def fit(self, train_x, train_y): """ Fit the regressor with more data. Args: train_x: A list of NetworkDescriptor. train_y: A list of metric values. """ if self.first_fitted: self.incremental_fit(train_x, train_y) else: self.first_f...
def incremental_fit(self, train_x, train_y): """ Incrementally fit the regressor. """ if not self._first_fitted: raise ValueError("The first_fit function needs to be called first.") train_x, train_y = np.array(train_x), np.array(train_y) # Incrementally compute K up...
def first_fit(self, train_x, train_y): """ Fit the regressor for the first time. """ train_x, train_y = np.array(train_x), np.array(train_y) self._x = np.copy(train_x) self._y = np.copy(train_y) self._distance_matrix = edit_distance_matrix(self._x) k_matrix = bourgain_e...
def predict(self, train_x): """Predict the result. Args: train_x: A list of NetworkDescriptor. Returns: y_mean: The predicted mean. y_std: The predicted standard deviation. """ k_trans = np.exp(-np.power(edit_distance_matrix(train_x, self._x), ...
def generate(self, descriptors): """Generate new architecture. Args: descriptors: All the searched neural architectures. Returns: graph: An instance of Graph. A morphed neural network with weights. father_id: The father node ID in the search tree. """ ...
def acq(self, graph): ''' estimate the value of generated graph ''' mean, std = self.gpr.predict(np.array([graph.extract_descriptor()])) if self.optimizemode is OptimizeMode.Maximize: return mean + self.beta * std return mean - self.beta * std
def add_child(self, u, v): ''' add child to search tree itself. Arguments: u {int} -- father id v {int} -- child id ''' if u == -1: self.root = v self.adj_list[v] = [] return if v not in self.adj_list[u]: s...
def get_dict(self, u=None): """ A recursive function to return the content of the tree in a dict.""" if u is None: return self.get_dict(self.root) children = [] for v in self.adj_list[u]: children.append(self.get_dict(v)) ret = {"name": u, "children": chil...
def train_with_graph(p_graph, qp_pairs, dev_qp_pairs): ''' Train a network from a specific graph. ''' global sess with tf.Graph().as_default(): train_model = GAG(cfg, embed, p_graph) train_model.build_net(is_training=True) tf.get_variable_scope().reuse_variables() dev...
def generate_multiple_parameters(self, parameter_id_list): """Returns multiple sets of trial (hyper-)parameters, as iterable of serializable objects. Call 'generate_parameters()' by 'count' times by default. User code must override either this function or 'generate_parameters()'. If ther...
def graph_loads(graph_json): ''' Load graph ''' layers = [] for layer in graph_json['layers']: layer_info = Layer(layer['graph_type'], layer['input'], layer['output'], layer['size'], layer['hash_id']) layer_info.is_delete = layer['is_delete'] _logger.debug('append layer {}'.f...
def update_hash(self, layers: Iterable): """ Calculation of `hash_id` of Layer. Which is determined by the properties of itself, and the `hash_id`s of input layers """ if self.graph_type == LayerType.input.value: return hasher = hashlib.md5() hasher.update(Lay...
def update_hash(self): """ update hash id of each layer, in topological order/recursively hash id will be used in weight sharing """ _logger.debug('update hash') layer_in_cnt = [len(layer.input) for layer in self.layers] topo_queue = deque([i for i, layer in enume...
def init_logger(logger_file_path, log_level_name='info'): """Initialize root logger. This will redirect anything from logging.getLogger() as well as stdout to specified file. logger_file_path: path of logger file (path-like object). """ log_level = log_level_map.get(log_level_name, logging.INFO) ...
def create_mnist_model(hyper_params, input_shape=(H, W, 1), num_classes=NUM_CLASSES): ''' Create simple convolutional model ''' layers = [ Conv2D(32, kernel_size=(3, 3), activation='relu', input_shape=input_shape), Conv2D(64, (3, 3), activation='relu'), MaxPooling2D(pool_size=(2,...
def load_mnist_data(args): ''' Load MNIST dataset ''' (x_train, y_train), (x_test, y_test) = mnist.load_data() x_train = (np.expand_dims(x_train, -1).astype(np.float) / 255.)[:args.num_train] x_test = (np.expand_dims(x_test, -1).astype(np.float) / 255.)[:args.num_test] y_train = keras.utils...
def train(args, params): ''' Train model ''' x_train, y_train, x_test, y_test = load_mnist_data(args) model = create_mnist_model(params) # nni model.fit(x_train, y_train, batch_size=args.batch_size, epochs=args.epochs, verbose=1, validation_data=(x_test, y_test), callbacks=[SendMet...
def on_epoch_end(self, epoch, logs={}): ''' Run on end of each epoch ''' LOG.debug(logs) nni.report_intermediate_result(logs["val_acc"])
def get_all_config(self): '''get all of config values''' return json.dumps(self.config, indent=4, sort_keys=True, separators=(',', ':'))
def set_config(self, key, value): '''set {key:value} paris to self.config''' self.config = self.read_file() self.config[key] = value self.write_file()
def write_file(self): '''save config to local file''' if self.config: try: with open(self.config_file, 'w') as file: json.dump(self.config, file) except IOError as error: print('Error:', error) return
def add_experiment(self, id, port, time, file_name, platform): '''set {key:value} paris to self.experiment''' self.experiments[id] = {} self.experiments[id]['port'] = port self.experiments[id]['startTime'] = time self.experiments[id]['endTime'] = 'N/A' self.experiments[id...
def update_experiment(self, id, key, value): '''Update experiment''' if id not in self.experiments: return False self.experiments[id][key] = value self.write_file() return True
def remove_experiment(self, id): '''remove an experiment by id''' if id in self.experiments: self.experiments.pop(id) self.write_file()
def write_file(self): '''save config to local file''' try: with open(self.experiment_file, 'w') as file: json.dump(self.experiments, file) except IOError as error: print('Error:', error) return
def read_file(self): '''load config from local file''' if os.path.exists(self.experiment_file): try: with open(self.experiment_file, 'r') as file: return json.load(file) except ValueError: return {} return {}
def load_from_file(path, fmt=None, is_training=True): ''' load data from file ''' if fmt is None: fmt = 'squad' assert fmt in ['squad', 'csv'], 'input format must be squad or csv' qp_pairs = [] if fmt == 'squad': with open(path) as data_file: data = json.load(data...
def tokenize(qp_pair, tokenizer=None, is_training=False): ''' tokenize function. ''' question_tokens = tokenizer.tokenize(qp_pair['question']) passage_tokens = tokenizer.tokenize(qp_pair['passage']) if is_training: question_tokens = question_tokens[:300] passage_tokens = passage_...
def collect_vocab(qp_pairs): ''' Build the vocab from corpus. ''' vocab = set() for qp_pair in qp_pairs: for word in qp_pair['question_tokens']: vocab.add(word['word']) for word in qp_pair['passage_tokens']: vocab.add(word['word']) return vocab
def shuffle_step(entries, step): ''' Shuffle the step ''' answer = [] for i in range(0, len(entries), step): sub = entries[i:i+step] shuffle(sub) answer += sub return answer
def get_batches(qp_pairs, batch_size, need_sort=True): ''' Get batches data and shuffle. ''' if need_sort: qp_pairs = sorted(qp_pairs, key=lambda qp: ( len(qp['passage_tokens']), qp['id']), reverse=True) batches = [{'qp_pairs': qp_pairs[i:(i + batch_size)]} for i i...
def get_char_input(data, char_dict, max_char_length): ''' Get char input. ''' batch_size = len(data) sequence_length = max(len(d) for d in data) char_id = np.zeros((max_char_length, sequence_length, batch_size), dtype=np.int32) char_lengths = np.zeros((sequence_length...
def get_word_input(data, word_dict, embed, embed_dim): ''' Get word input. ''' batch_size = len(data) max_sequence_length = max(len(d) for d in data) sequence_length = max_sequence_length word_input = np.zeros((max_sequence_length, batch_size, embed_dim), dtype=np....
def get_word_index(tokens, char_index): ''' Given word return word index. ''' for (i, token) in enumerate(tokens): if token['char_end'] == 0: continue if token['char_begin'] <= char_index and char_index <= token['char_end']: return i return 0
def get_answer_begin_end(data): ''' Get answer's index of begin and end. ''' begin = [] end = [] for qa_pair in data: tokens = qa_pair['passage_tokens'] char_begin = qa_pair['answer_begin'] char_end = qa_pair['answer_end'] word_begin = get_word_index(tokens, char_...
def get_buckets(min_length, max_length, bucket_count): ''' Get bucket by length. ''' if bucket_count <= 0: return [max_length] unit_length = int((max_length - min_length) // (bucket_count)) buckets = [min_length + unit_length * (i + 1) for i in range(0, bucket_count)] ...
def tokenize(self, text): ''' tokenize function in Tokenizer. ''' start = -1 tokens = [] for i, character in enumerate(text): if character == ' ' or character == '\t': if start >= 0: word = text[start:i] ...
def generate_new_id(self): """ generate new id and event hook for new Individual """ self.events.append(Event()) indiv_id = self.indiv_counter self.indiv_counter += 1 return indiv_id
def init_population(self, population_size, graph_max_layer, graph_min_layer): """ initialize populations for evolution tuner """ population = [] graph = Graph(max_layer_num=graph_max_layer, min_layer_num=graph_min_layer, inputs=[Layer(LayerType.input.value, ...
def generate_parameters(self, parameter_id): """Returns a set of trial graph config, as a serializable object. An example configuration: ```json { "shared_id": [ "4a11b2ef9cb7211590dfe81039b27670", "370af04de24985e5ea5b3d72b12644c9", ...
def receive_trial_result(self, parameter_id, parameters, value): ''' Record an observation of the objective function parameter_id : int parameters : dict of parameters value: final metrics of the trial, including reward ''' logger.debug('acquiring lock for param {...
def _update_data(self, trial_job_id, trial_history): """update data Parameters ---------- trial_job_id: int trial job id trial_history: list The history performance matrix of each trial """ if trial_job_id not in self.running_history: ...
def trial_end(self, trial_job_id, success): """trial_end Parameters ---------- trial_job_id: int trial job id success: bool True if succssfully finish the experiment, False otherwise """ if trial_job_id in self.running_history: ...
def assess_trial(self, trial_job_id, trial_history): """assess_trial Parameters ---------- trial_job_id: int trial job id trial_history: list The history performance matrix of each trial Returns ------- bool As...
def copyHdfsDirectoryToLocal(hdfsDirectory, localDirectory, hdfsClient): '''Copy directory from HDFS to local''' if not os.path.exists(localDirectory): os.makedirs(localDirectory) try: listing = hdfsClient.list_status(hdfsDirectory) except Exception as exception: nni_log(LogType....
def copyHdfsFileToLocal(hdfsFilePath, localFilePath, hdfsClient, override=True): '''Copy file from HDFS to local''' if not hdfsClient.exists(hdfsFilePath): raise Exception('HDFS file {} does not exist!'.format(hdfsFilePath)) try: file_status = hdfsClient.get_file_status(hdfsFilePath) ...
def copyDirectoryToHdfs(localDirectory, hdfsDirectory, hdfsClient): '''Copy directory from local to HDFS''' if not os.path.exists(localDirectory): raise Exception('Local Directory does not exist!') hdfsClient.mkdirs(hdfsDirectory) result = True for file in os.listdir(localDirectory): ...
def copyFileToHdfs(localFilePath, hdfsFilePath, hdfsClient, override=True): '''Copy a local file to HDFS directory''' if not os.path.exists(localFilePath): raise Exception('Local file Path does not exist!') if os.path.isdir(localFilePath): raise Exception('localFile should not a directory!')...
def load_data(): '''Load dataset, use boston dataset''' boston = load_boston() X_train, X_test, y_train, y_test = train_test_split(boston.data, boston.target, random_state=99, test_size=0.25) #normalize data ss_X = StandardScaler() ss_y = StandardScaler() X_train = ss_X.fit_transform(X_trai...
def get_model(PARAMS): '''Get model according to parameters''' model_dict = { 'LinearRegression': LinearRegression(), 'SVR': SVR(), 'KNeighborsRegressor': KNeighborsRegressor(), 'DecisionTreeRegressor': DecisionTreeRegressor() } if not model_dict.get(PARAMS['model_name'])...
def run(X_train, X_test, y_train, y_test, PARAMS): '''Train model and predict result''' model.fit(X_train, y_train) predict_y = model.predict(X_test) score = r2_score(y_test, predict_y) LOG.debug('r2 score: %s' % score) nni.report_final_result(score)
def add_skip_connection(self, u, v, connection_type): """ Add a skip-connection to the descriptor. Args: u: Number of convolutional layers before the starting point. v: Number of convolutional layers before the ending point. connection_type: Must be either CONCAT_CONN...
def to_json(self): ''' NetworkDescriptor to json representation ''' skip_list = [] for u, v, connection_type in self.skip_connections: skip_list.append({"from": u, "to": v, "type": connection_type}) return {"node_list": self.layers, "skip_list": skip_list}
def add_layer(self, layer, input_node_id): """Add a layer to the Graph. Args: layer: An instance of the subclasses of StubLayer in layers.py. input_node_id: An integer. The ID of the input node of the layer. Returns: output_node_id: An integer. The ID of the o...
def _add_node(self, node): """Add a new node to node_list and give the node an ID. Args: node: An instance of Node. Returns: node_id: An integer. """ node_id = len(self.node_list) self.node_to_id[node] = node_id self.node_list.append(node) ...
def _add_edge(self, layer, input_id, output_id): """Add a new layer to the graph. The nodes should be created in advance.""" if layer in self.layer_to_id: layer_id = self.layer_to_id[layer] if input_id not in self.layer_id_to_input_node_ids[layer_id]: self.layer_...
def _redirect_edge(self, u_id, v_id, new_v_id): """Redirect the layer to a new node. Change the edge originally from `u_id` to `v_id` into an edge from `u_id` to `new_v_id` while keeping all other property of the edge the same. """ layer_id = None for index, edge_tuple in...
def _replace_layer(self, layer_id, new_layer): """Replace the layer with a new layer.""" old_layer = self.layer_list[layer_id] new_layer.input = old_layer.input new_layer.output = old_layer.output new_layer.output.shape = new_layer.output_shape self.layer_list[layer_id] =...
def topological_order(self): """Return the topological order of the node IDs from the input node to the output node.""" q = Queue() in_degree = {} for i in range(self.n_nodes): in_degree[i] = 0 for u in range(self.n_nodes): for v, _ in self.adj_list[u]: ...
def _get_pooling_layers(self, start_node_id, end_node_id): """Given two node IDs, return all the pooling layers between them.""" layer_list = [] node_list = [start_node_id] assert self._depth_first_search(end_node_id, layer_list, node_list) ret = [] for layer_id in layer_...
def _depth_first_search(self, target_id, layer_id_list, node_list): """Search for all the layers and nodes down the path. A recursive function to search all the layers and nodes between the node in the node_list and the node with target_id.""" assert len(node_list) <= self.n_nodes ...
def _search(self, u, start_dim, total_dim, n_add): """Search the graph for all the layers to be widened caused by an operation. It is an recursive function with duplication check to avoid deadlock. It searches from a starting node u until the corresponding layers has been widened. Args: ...
def to_deeper_model(self, target_id, new_layer): """Insert a relu-conv-bn block after the target block. Args: target_id: A convolutional layer ID. The new block should be inserted after the block. new_layer: An instance of StubLayer subclasses. """ self.operation_...
def to_wider_model(self, pre_layer_id, n_add): """Widen the last dimension of the output of the pre_layer. Args: pre_layer_id: The ID of a convolutional layer or dense layer. n_add: The number of dimensions to add. """ self.operation_history.append(("to_wider_mode...