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def split_model_kwargs(kw): """ django_any birds language parser """ from collections import defaultdict model_fields = {} fields_agrs = defaultdict(lambda : {}) for key in kw.keys(): if '__' in key: field, _, subfield = key.partition('__') fields_ag...
def register(self, field_type, impl=None): """ Register form field data function. Could be used as decorator """ def _wrapper(func): self.registry[field_type] = func return func if impl: return _wrapper(impl) return _w...
def _create_value(self, *args, **kwargs): """ Lowest value generator. Separated from __call__, because it seems that python cache __call__ reference on module import """ if not len(args): raise TypeError('Object instance is not provided') if self.by_...
def any_form_default(form_cls, **kwargs): """ Returns tuple with form data and files """ form_data = {} form_files = {} form_fields, fields_args = split_model_kwargs(kwargs) for name, field in form_cls.base_fields.iteritems(): if name in form_fields: form_data[name] = k...
def field_required_attribute(function): """ Sometimes return None if field is not required >>> result = any_form_field(forms.BooleanField(required=False)) >>> result in ['', 'True', 'False'] True """ def _wrapper(field, **kwargs): if not field.required and random.random < 0.1: ...
def field_choices_attibute(function): """ Selection from field.choices """ def _wrapper(field, **kwargs): if hasattr(field.widget, 'choices'): return random.choice(list(valid_choices(field.widget.choices))) return function(field, **kwargs) return _wrapper
def char_field_data(field, **kwargs): """ Return random value for CharField >>> result = any_form_field(forms.CharField(min_length=3, max_length=10)) >>> type(result) <type 'str'> """ min_length = kwargs.get('min_length', 1) max_length = kwargs.get('max_length', field.max_length or 255) ...
def decimal_field_data(field, **kwargs): """ Return random value for DecimalField >>> result = any_form_field(forms.DecimalField(max_value=100, min_value=11, max_digits=4, decimal_places = 2)) >>> type(result) <type 'str'> >>> from decimal import Decimal >>> Decimal(result) >= 11, Decimal(r...
def email_field_data(field, **kwargs): """ Return random value for EmailField >>> result = any_form_field(forms.EmailField(min_length=10, max_length=30)) >>> type(result) <type 'str'> >>> len(result) <= 30, len(result) >= 10 (True, True) """ max_length = 10 if field.max_length: ...
def date_field_data(field, **kwargs): """ Return random value for DateField >>> result = any_form_field(forms.DateField()) >>> type(result) <type 'str'> """ from_date = kwargs.get('from_date', date(1990, 1, 1)) to_date = kwargs.get('to_date', date.today()) date_format = random....
def datetime_field_data(field, **kwargs): """ Return random value for DateTimeField >>> result = any_form_field(forms.DateTimeField()) >>> type(result) <type 'str'> """ from_date = kwargs.get('from_date', datetime(1990, 1, 1)) to_date = kwargs.get('to_date', datetime.today()) date_f...
def float_field_data(field, **kwargs): """ Return random value for FloatField >>> result = any_form_field(forms.FloatField(max_value=200, min_value=100)) >>> type(result) <type 'str'> >>> float(result) >=100, float(result) <=200 (True, True) """ min_value = 0 max_value = 100 ...
def integer_field_data(field, **kwargs): """ Return random value for IntegerField >>> result = any_form_field(forms.IntegerField(max_value=200, min_value=100)) >>> type(result) <type 'str'> >>> int(result) >=100, int(result) <=200 (True, True) """ min_value = 0 max_value = 100 ...
def ipaddress_field_data(field, **kwargs): """ Return random value for IPAddressField >>> result = any_form_field(forms.IPAddressField()) >>> type(result) <type 'str'> >>> from django.core.validators import ipv4_re >>> import re >>> re.match(ipv4_re, result) is not None True ...
def slug_field_data(field, **kwargs): """ Return random value for SlugField >>> result = any_form_field(forms.SlugField()) >>> type(result) <type 'str'> >>> from django.core.validators import slug_re >>> import re >>> re.match(slug_re, result) is not None True """ min_le...
def time_field_data(field, **kwargs): """ Return random value for TimeField >>> result = any_form_field(forms.TimeField()) >>> type(result) <type 'str'> """ time_format = random.choice(field.input_formats or formats.get_format('TIME_INPUT_FORMATS')) return time(xunit.any_int(min_value=...
def choice_field_data(field, **kwargs): """ Return random value for ChoiceField >>> CHOICES = [('YNG', 'Child'), ('OLD', 'Parent')] >>> result = any_form_field(forms.ChoiceField(choices=CHOICES)) >>> type(result) <type 'str'> >>> result in ['YNG', 'OLD'] True >>> typed_result = any_...
def multiple_choice_field_data(field, **kwargs): """ Return random value for MultipleChoiceField >>> CHOICES = [('YNG', 'Child'), ('MIDDLE', 'Parent') ,('OLD', 'GrandParent')] >>> result = any_form_field(forms.MultipleChoiceField(choices=CHOICES)) >>> type(result) <type 'str'> """ if fi...
def model_choice_field_data(field, **kwargs): """ Return one of first ten items for field queryset """ data = list(field.queryset[:10]) if data: return random.choice(data) else: raise TypeError('No %s available in queryset' % field.queryset.model)
def encode_xml(obj, E=None): """ Encodes an OpenMath object as an XML node. :param obj: OpenMath object (or related item) to encode as XML. :type obj: OMAny :param ns: Namespace prefix to use for http://www.openmath.org/OpenMath", or None if default namespace. :type ns: str, None :ret...
def encode_bytes(obj, nsprefix=None): """ Encodes an OpenMath element into a string. :param obj: Object to encode as string. :type obj: OMAny :rtype: bytes """ node = encode_xml(obj, nsprefix) return etree.tostring(node)
def decode_bytes(xml, validator=None, snippet=False): """ Decodes a stream into an OpenMath object. :param xml: XML to decode. :type xml: bytes :param validator: Validator to use. :param snippet: Is this an OpenMath snippet, or a full object? :type snippet: Bool :rtype: OMAny """ ...
def decode_stream(stream, validator=None, snippet=False): """ Decodes a stream into an OpenMath object. :param stream: Stream to decode. :type stream: Any :param validator: Validator to use. :param snippet: Is this an OpenMath snippet, or a full object? :type snippet: Bool :rtype: OMAny ...
def decode_xml(elem, _in_bind = False): """ Decodes an XML element into an OpenMath object. :param elem: Element to decode. :type elem: etree._Element :param _in_bind: Internal flag used to indicate if we should decode within an OMBind. :type _in_bind: bool :rtype: OMAny """ obj ...
def publish(msg="checkpoint: publish package"): """Deploy the app to PYPI. Args: msg (str, optional): Description """ test = check() if test.succeeded: # clean() # push(msg) sdist = local("python setup.py sdist") if sdist.succeeded: build = local(...
def tag(version=__version__): """Deploy a version tag.""" build = local("git tag {0}".format(version)) if build.succeeded: local("git push --tags")
def any_field_blank(function): """ Sometimes return None if field could be blank """ def wrapper(field, **kwargs): if kwargs.get('isnull', False): return None if field.blank and random.random < 0.1: return None return function(field, **kwarg...
def any_field_choices(function): """ Selection from field.choices >>> CHOICES = [('YNG', 'Child'), ('OLD', 'Parent')] >>> result = any_field(models.CharField(max_length=3, choices=CHOICES)) >>> result in ['YNG', 'OLD'] True """ def wrapper(field, **kwargs): if field.ch...
def any_biginteger_field(field, **kwargs): """ Return random value for BigIntegerField >>> result = any_field(models.BigIntegerField()) >>> type(result) <type 'long'> """ min_value = kwargs.get('min_value', 1) max_value = kwargs.get('max_value', 10**10) return long(xunit.a...
def any_positiveinteger_field(field, **kwargs): """ An positive integer >>> result = any_field(models.PositiveIntegerField()) >>> type(result) <type 'int'> >>> result > 0 True """ min_value = kwargs.get('min_value', 1) max_value = kwargs.get('max_value', 9999) re...
def any_char_field(field, **kwargs): """ Return random value for CharField >>> result = any_field(models.CharField(max_length=10)) >>> type(result) <type 'str'> """ min_length = kwargs.get('min_length', 1) max_length = kwargs.get('max_length', field.max_length) return xuni...
def any_commaseparatedinteger_field(field, **kwargs): """ Return random value for CharField >>> result = any_field(models.CommaSeparatedIntegerField(max_length=10)) >>> type(result) <type 'str'> >>> [int(num) for num in result.split(',')] and 'OK' 'OK' """ nums_count = fie...
def any_date_field(field, **kwargs): """ Return random value for DateField, skips auto_now and auto_now_add fields >>> result = any_field(models.DateField()) >>> type(result) <type 'datetime.date'> """ if field.auto_now or field.auto_now_add: return None from_date...
def any_datetime_field(field, **kwargs): """ Return random value for DateTimeField, skips auto_now and auto_now_add fields >>> result = any_field(models.DateTimeField()) >>> type(result) <type 'datetime.datetime'> """ from_date = kwargs.get('from_date', datetime(1990, 1, 1)) ...
def any_decimal_field(field, **kwargs): """ Return random value for DecimalField >>> result = any_field(models.DecimalField(max_digits=5, decimal_places=2)) >>> type(result) <class 'decimal.Decimal'> """ min_value = kwargs.get('min_value', 0) max_value = kwargs.get('max_value',...
def any_email_field(field, **kwargs): """ Return random value for EmailField >>> result = any_field(models.EmailField()) >>> type(result) <type 'str'> >>> re.match(r"(?:^|\s)[-a-z0-9_.]+@(?:[-a-z0-9]+\.)+[a-z]{2,6}(?:\s|$)", result, re.IGNORECASE) is not None True """ retu...
def any_float_field(field, **kwargs): """ Return random value for FloatField >>> result = any_field(models.FloatField()) >>> type(result) <type 'float'> """ min_value = kwargs.get('min_value', 1) max_value = kwargs.get('max_value', 100) precision = kwargs.get('precision', ...
def any_file_field(field, **kwargs): """ Lookup for nearest existing file """ def get_some_file(path): subdirs, files = field.storage.listdir(path) if files: result_file = random.choice(files) instance = field.storage.open("%s/%s" % (path, result_file)...
def any_filepath_field(field, **kwargs): """ Lookup for nearest existing file """ def get_some_file(path): subdirs, files = [], [] for entry in os.listdir(path): entry_path = os.path.join(path, entry) if os.path.isdir(entry_path): subdir...
def any_ipaddress_field(field, **kwargs): """ Return random value for IPAddressField >>> result = any_field(models.IPAddressField()) >>> type(result) <type 'str'> >>> from django.core.validators import ipv4_re >>> re.match(ipv4_re, result) is not None True """ nums = [s...
def any_positivesmallinteger_field(field, **kwargs): """ Return random value for PositiveSmallIntegerField >>> result = any_field(models.PositiveSmallIntegerField()) >>> type(result) <type 'int'> >>> result < 256, result > 0 (True, True) """ min_value = kwargs.get('min_value...
def any_slug_field(field, **kwargs): """ Return random value for SlugField >>> result = any_field(models.SlugField()) >>> type(result) <type 'str'> >>> from django.core.validators import slug_re >>> re.match(slug_re, result) is not None True """ letters = ascii_letters ...
def any_smallinteger_field(field, **kwargs): """ Return random value for SmallIntegerValue >>> result = any_field(models.SmallIntegerField()) >>> type(result) <type 'int'> >>> result > -256, result < 256 (True, True) """ min_value = kwargs.get('min_value', -255) max_val...
def any_integer_field(field, **kwargs): """ Return random value for IntegerField >>> result = any_field(models.IntegerField()) >>> type(result) <type 'int'> """ min_value = kwargs.get('min_value', -10000) max_value = kwargs.get('max_value', 10000) return xunit.any_int(min_va...
def any_url_field(field, **kwargs): """ Return random value for URLField >>> result = any_field(models.URLField()) >>> from django.core.validators import URLValidator >>> re.match(URLValidator.regex, result) is not None True """ url = kwargs.get('url') if not url: ...
def any_time_field(field, **kwargs): """ Return random value for TimeField >>> result = any_field(models.TimeField()) >>> type(result) <type 'datetime.time'> """ return time( xunit.any_int(min_value=0, max_value=23), xunit.any_int(min_value=0, max_value=59), ...
def load_python_global(module, name): """ Evaluate an OpenMath symbol describing a global Python object EXAMPLES:: >>> from openmath.convert_pickle import to_python >>> from openmath.convert_pickle import load_python_global >>> load_python_global('math', 'sin') <built-in f...
def cls_build(inst, state): """ Apply the setstate protocol to initialize `inst` from `state`. INPUT: - ``inst`` -- a raw instance of a class - ``state`` -- the state to restore; typically a dictionary mapping attribute names to their values EXAMPLES:: >>> from openmath.convert_pickl...
def OMSymbol(self, module, name): r""" Helper function to build an OMS object EXAMPLES:: >>> from openmath.convert_pickle import PickleConverter >>> converter = PickleConverter() >>> o = converter.OMSymbol(module="foo.bar", name="baz"); o ...
def OMList(self, l): """ Convert a list of OM objects into an OM object EXAMPLES:: >>> from openmath import openmath as om >>> from openmath.convert_pickle import PickleConverter >>> converter = PickleConverter() >>> o = converter.OMList([om.OMI...
def OMTuple(self, l): """ Convert a tuple of OM objects into an OM object EXAMPLES:: >>> from openmath import openmath as om >>> from openmath.convert_pickle import PickleConverter >>> converter = PickleConverter() >>> o = converter.OMTuple([om....
def OMDict(self, items): """ Convert a dictionary (or list of items thereof) of OM objects into an OM object EXAMPLES:: >>> from openmath import openmath as om >>> from openmath.convert_pickle import PickleConverter >>> converter = PickleConverter() ...
def decode(data): """ Decodes a PackBit encoded data. """ data = bytearray(data) # <- python 2/3 compatibility fix result = bytearray() pos = 0 while pos < len(data): header_byte = data[pos] if header_byte > 127: header_byte -= 256 pos += 1 if 0 <...
def encode(data): """ Encodes data using PackBits encoding. """ if len(data) == 0: return data if len(data) == 1: return b'\x00' + data data = bytearray(data) result = bytearray() buf = bytearray() pos = 0 repeat_count = 0 MAX_LENGTH = 127 # we can saf...
def _check_currency_format(self, format=None): """ Summary. Args: format (TYPE, optional): Description Returns: name (TYPE): Description """ defaults = self.settings['currency']['format'] if hasattr(format, '__call__'): format...
def _change_precision(self, val, base=0): """ Check and normalise the value of precision (must be positive integer). Args: val (INT): must be positive integer base (INT): Description Returns: VAL (INT): Description """ if not isinstan...
def parse(self, value, decimal=None): """ Summary. Takes a string/array of strings, removes all formatting/cruft and returns the raw float value Decimal must be included in the regular expression to match floats (defaults to Accounting.settings.number.decimal), ...
def to_fixed(self, value, precision): """Implementation that treats floats more like decimals. Fixes binary rounding issues (eg. (0.615).toFixed(2) === "0.61") that present problems for accounting and finance-related software. """ precision = self._change_precision( ...
def format(self, number, **kwargs): """Format a given number. Format a number, with comma-separated thousands and custom precision/decimal places Localise by overriding the precision and thousand / decimal separators 2nd parameter `precision` can be an object matching `settings...
def as_money(self, number, **options): """Format a number into currency. Usage: accounting.formatMoney(number, symbol, precision, thousandsSep, decimalSep, format) defaults: (0, "$", 2, ",", ".", "%s%v") Localise by overriding the symbol, precision,...
def to_array(data): """ Import a blosc array into a numpy array. Arguments: data: A blosc packed numpy array Returns: A numpy array with data from a blosc compressed array """ try: numpy_data = blosc.unpack_array(data) except Exception as e: raise ValueError...
def from_array(array): """ Export a numpy array to a blosc array. Arguments: array: The numpy array to compress to blosc array Returns: Bytes/String. A blosc compressed array """ try: raw_data = blosc.pack_array(array) except Exception as e: raise ValueError...
def add(self, name, path): """Add a workspace entry in user config file.""" if not (os.path.exists(path)): raise ValueError("Workspace path `%s` doesn't exists." % path) if (self.exists(name)): raise ValueError("Workspace `%s` already exists." % name) self.confi...
def remove(self, name): """Remove workspace from config file.""" if not (self.exists(name)): raise ValueError("Workspace `%s` doesn't exists." % name) self.config["workspaces"].pop(name, 0) self.config.write()
def list(self): """List all available workspaces.""" ws_list = {} for key, value in self.config["workspaces"].items(): ws_list[key] = dict({"name": key}, **value) return ws_list
def get(self, name): """ Get workspace infos from name. Return None if workspace doesn't exists. """ ws_list = self.list() return ws_list[name] if name in ws_list else None
def repository_exists(self, workspace, repo): """Return True if workspace contains repository name.""" if not self.exists(workspace): return False workspaces = self.list() return repo in workspaces[workspace]["repositories"]
def sync(self, ws_name): """Synchronise workspace's repositories.""" path = self.config["workspaces"][ws_name]["path"] repositories = self.config["workspaces"][ws_name]["repositories"] logger = logging.getLogger(__name__) color = Color() for r in os.listdir(path): ...
def clone(url, path): """Clone a repository.""" adapter = None if url[:4] == "git@" or url[-4:] == ".git": adapter = Git(path) if url[:6] == "svn://": adapter = Svn(path) if url[:6] == "bzr://": adapter = Bzr(path) if url[:9] == "ssh://hg@": adapter = Hg(path) ...
def check_version(): """ Tells you if you have an old version of ndio. """ import requests r = requests.get('https://pypi.python.org/pypi/ndio/json').json() r = r['info']['version'] if r != version: print("A newer version of ndio is available. " + "'pip install -U ndio'...
def to_voxels(array): """ Converts an array to its voxel list. Arguments: array (numpy.ndarray): A numpy nd array. This must be boolean! Returns: A list of n-tuples """ if type(array) is not numpy.ndarray: raise ValueError("array argument must be of type numpy.ndarray")...
def from_voxels(voxels): """ Converts a voxel list to an ndarray. Arguments: voxels (tuple[]): A list of coordinates indicating coordinates of populated voxels in an ndarray. Returns: numpy.ndarray The result of the transformation. """ dimensions = len(voxels[0]) ...
def execute(self, args): """Execute update subcommand.""" if args.name is not None: self.print_workspace(args.name) elif args.all is not None: self.print_all()
def print_update(self, repo_name, repo_path): """Print repository update.""" color = Color() self.logger.info(color.colored( "=> [%s] %s" % (repo_name, repo_path), "green")) try: repo = Repository(repo_path) repo.update() except RepositoryError...
def set_file_handler(self, logfile): """Set FileHandler""" handler = logging.FileHandler(logfile) handler.setLevel(logging.NOTSET) handler.setFormatter(Formatter(FORMAT)) self.addHandler(handler)
def set_console_handler(self, debug=False): """Set Console handler.""" console = logging.StreamHandler() console.setFormatter(Formatter(LFORMAT)) if not debug: console.setLevel(logging.INFO) self.addHandler(console)
def execute(self, command, path=None): """Execute command with os.popen and return output.""" logger = logging.getLogger(__name__) self.check_executable() logger.debug("Executing command `%s` (cwd: %s)" % (command, path)) process = subprocess.Popen( command, ...
def load(png_filename): """ Import a png file into a numpy array. Arguments: png_filename (str): A string filename of a png datafile Returns: A numpy array with data from the png file """ # Expand filename to be absolute png_filename = os.path.expanduser(png_filename) ...
def save(filename, numpy_data): """ Export a numpy array to a png file. Arguments: filename (str): A filename to which to save the png data numpy_data (numpy.ndarray OR str): The numpy array to save to png. OR a string: If a string is provded, it should be a binary png str ...
def save_collection(png_filename_base, numpy_data, start_layers_at=1): """ Export a numpy array to a set of png files, with each Z-index 2D array as its own 2D file. Arguments: png_filename_base: A filename template, such as "my-image-*.png" which will lead t...
def load_collection(png_filename_base): """ Import all files matching the filename base given with `png_filename_base`. Images are ordered by alphabetical order, which means that you *MUST* 0-pad your numbers if they span a power of ten (e.g. 0999-1000 or 09-10). This is handled automatically by its...
def print_workspace(self, name): """Print workspace status.""" path_list = find_path(name, self.config) if len(path_list) == 0: self.logger.error("No matches for `%s`" % name) return False for name, path in path_list.items(): self.print_status(name, ...
def print_status(self, repo_name, repo_path): """Print repository status.""" color = Color() self.logger.info(color.colored( "=> [%s] %s" % (repo_name, repo_path), "green")) try: repo = Repository(repo_path) repo.status() except RepositoryError...
def get_block_size(self, token, resolution=None): """ Gets the block-size for a given token at a given resolution. Arguments: token (str): The token to inspect resolution (int : None): The resolution at which to inspect data. If none is specified, uses th...
def get_xy_slice(self, token, channel, x_start, x_stop, y_start, y_stop, z_index, resolution=0): """ Return a binary-encoded, decompressed 2d image. You should specify a 'token' and 'channel' pair. For image dat...
def get_volume(self, token, channel, x_start, x_stop, y_start, y_stop, z_start, z_stop, resolution=1, block_size=DEFAULT_BLOCK_SIZE, neariso=False): """ Get a RAMONVolume volumetric cutout f...
def get_cutout(self, token, channel, x_start, x_stop, y_start, y_stop, z_start, z_stop, t_start=0, t_stop=1, resolution=1, block_size=DEFAULT_BLOCK_SIZE, neariso=False): """ ...
def post_cutout(self, token, channel, x_start, y_start, z_start, data, resolution=0): """ Post a cutout to the server. Arguments: token (str) channel (str) x_s...
def _post_cutout_no_chunking_blosc(self, token, channel, x_start, y_start, z_start, data, resolution): """ Accepts data in zyx. !!! """ data = numpy.expand_dims(data, axis=0) blosc_data = blosc.pack_arr...
def load(tiff_filename): """ Import a TIFF file into a numpy array. Arguments: tiff_filename: A string filename of a TIFF datafile Returns: A numpy array with data from the TIFF file """ # Expand filename to be absolute tiff_filename = os.path.expanduser(tiff_filename) ...
def save(tiff_filename, numpy_data): """ Export a numpy array to a TIFF file. Arguments: tiff_filename: A filename to which to save the TIFF data numpy_data: The numpy array to save to TIFF Returns: String. The expanded filename that now holds the TIFF data """ # E...
def load_tiff_multipage(tiff_filename, dtype='float32'): """ Load a multipage tiff into a single variable in x,y,z format. Arguments: tiff_filename: Filename of source data dtype: data type to use for the returned tensor Returns: Array containing contents from i...
def write(self): """ Write config in configuration file. Data must me a dict. """ file = open(self.config_file, "w+") file.write(yaml.dump(dict(self), default_flow_style=False)) file.close()
def clone(self, url): """Clone repository from url.""" return self.execute("%s branch %s %s" % (self.executable, url, self.path))
def get_version(): """Get version from package resources.""" requirement = pkg_resources.Requirement.parse("yoda") provider = pkg_resources.get_provider(requirement) return provider.version
def mix_and_match(name, greeting='Hello', yell=False): '''Mixing and matching positional args and keyword options.''' say = '%s, %s' % (greeting, name) if yell: print '%s!' % say.upper() else: print '%s.' % say
def option_decorator(name, greeting, yell): '''Same as mix_and_match, but using the @option decorator.''' # Use the @option decorator when you need more control over the # command line options. say = '%s, %s' % (greeting, name) if yell: print '%s!' % say.upper() else: print '%s.'...
def load(nifti_filename): """ Import a nifti file into a numpy array. TODO: Currently only transfers raw data for compatibility with annotation and ND formats Arguments: nifti_filename (str): A string filename of a nifti datafile Returns: A numpy array with data from the nifti fi...
def save(nifti_filename, numpy_data): """ Export a numpy array to a nifti file. TODO: currently using dummy headers and identity matrix affine transform. This can be expanded. Arguments: nifti_filename (str): A filename to which to save the nifti data numpy_data (numpy.ndarray): The nu...
def ping(self, suffix='public_tokens/'): """ Return the status-code of the API (estimated using the public-tokens lookup page). Arguments: suffix (str : 'public_tokens/'): The url endpoint to check Returns: int: status code """ return sel...